AT4G37020

eukaryotic initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001508
Physical Location & Seq
Forward (+)
17445621 .. 17447455
1835 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37020.1

Sequence Viewer

Length: 639 bp
ATGGACTCCATGGAAGCTCCATCTCTACCATTTCAATCTCCCTCTCGTTCCAGTCAACAATTGCATTTCTACCTCGCCGTGGATCGTCCCCAATTCAAAATGGAGACTGTAGTGGAATTATTAGGCGTTCTAGGTCGTCGTCCATGGCTTCCGATTGTAGTCTGTTGCAGCTCTCGTGACGAACTTGACGCCGTCTGTTCTTCCTTATCCACTCTTCCTTACATTTCCTTAGCCGCTTTGTACAGCGATCTAGCAGATAGAGAACGAGCTATGGTTATAGAGAAATTCAGGCAAGCAACAATCAACTGGAACCAGCAACTTAACTCTGTGGTAGAAGAAGGTTTGGAAGAGAGTGAAAACGGAAAAGAAGAAAAGACATCTCATTTGGTAGTTGTGACCGATGTTTGCCTTCCGTTACTCTCATCAGGAGAATCTTCTCTATCCGCACGCGTTCTCATAAACTACGAGCTTCCTACAAAGAAGGAAACATATACAAGGCGTATAACAACTTGCTTAGCTTCAGGTGGAATAGTCATAAACATGGTTGTTGGAGGTGAAGTAACGACTCTCAAAAGCCTCGAAGAAAGCAGTGGCATACTCATCGCTGAGATGCCAATCAATATTTCTGAAATCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 map03013 map03015 map03040
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.41

Weight (kDa)

4.76

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 637
AccII CGCG 1 cut(s) 450
AciI CCGC 2 cut(s) 234, 444
AclWI GGATC 1 cut(s) 90
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 504
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 2 cut(s) 35, 97
AjuI GAANNNNNNNTTGG 2 cut(s) 607, 639
AluBI AGCT 5 cut(s) 17, 171, 269, 469, 518
AluI AGCT 5 cut(s) 17, 171, 269, 469, 518
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 284
ArsI GACNNNNNNTTYG 2 cut(s) 367, 399
AsuHPI GGTGA 1 cut(s) 566
BauI CACGAG 1 cut(s) 174
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 28
BceAI ACGGC 2 cut(s) 62, 176
BcgI CGANNNNNNTGC 2 cut(s) 583, 617
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 2 cut(s) 131, 251
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 2 cut(s) 169, 234
BlpI GCTNAGC 1 cut(s) 514
BlsI GCNGC 2 cut(s) 170, 235
BmiI GGNNCC 1 cut(s) 311
BmsI GCATC 1 cut(s) 600
Bpu10I CCTNAGC 1 cut(s) 229
Bpu1102I GCTNAGC 1 cut(s) 514
BsaBI GATNNNNATC 1 cut(s) 614
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 3 cut(s) 9, 78, 143
BsaXI ACNNNNNCTCC 2 cut(s) 543, 573
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 51, 311
Bse8I GATNNNNATC 1 cut(s) 614
BseDI CCNNGG 3 cut(s) 9, 78, 143
BseJI GATNNNNATC 1 cut(s) 614
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 597
BseNI ACTGG 2 cut(s) 51, 311
BseXI GCAGC 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 450
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 72
Bsp1407I TGTACA 1 cut(s) 240
Bsp143I GATC 2 cut(s) 82, 247
Bsp1720I GCTNAGC 1 cut(s) 514
Bsp19I CCATGG 2 cut(s) 9, 143
BspACI CCGC 2 cut(s) 234, 444
BspCNI CTCAG 1 cut(s) 598
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 1 cut(s) 311
BspPI GGATC 1 cut(s) 90
BsrGI TGTACA 1 cut(s) 240
BsrI ACTGG 2 cut(s) 51, 311
BssECI CCNNGG 3 cut(s) 9, 78, 143
BssMI GATC 2 cut(s) 82, 247
BssNI GRCGYC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 174
BssT1I CCWWGG 2 cut(s) 9, 143
Bst2BI CACGAG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 2 cut(s) 219, 342
BstACI GRCGYC 1 cut(s) 189
BstAUI TGTACA 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 294, 448
BstDEI CTNAG 3 cut(s) 229, 514, 606
BstDSI CCRYGG 3 cut(s) 9, 78, 143
BstFNI CGCG 1 cut(s) 450
BstKTI GATC 2 cut(s) 85, 250
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 2 cut(s) 82, 247
BstSFI CTRYAG 1 cut(s) 108
BstUI CGCG 1 cut(s) 450
BstV1I GCAGC 1 cut(s) 180
BtgI CCRYGG 3 cut(s) 9, 78, 143
BtgZI GCGATG 1 cut(s) 586
BtsI GCAGTG 1 cut(s) 595
BtsIMutI CAGTG 1 cut(s) 595
Cac8I GCNNGC 2 cut(s) 294, 448
CseI GACGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 241
CviAII CATG 3 cut(s) 10, 144, 541
CviJI RGCY 8 cut(s) 17, 148, 171, 233, 269, 469, 518, 576
CviKI_1 RGCY 8 cut(s) 17, 148, 171, 233, 269, 469, 518, 576
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 3 cut(s) 229, 514, 606
DpnI GATC 2 cut(s) 84, 249
DpnII GATC 2 cut(s) 82, 247
Eam1104I CTCTTC 2 cut(s) 219, 342
EarI CTCTTC 2 cut(s) 219, 342
Eco130I CCWWGG 2 cut(s) 9, 143
Eco57I CTGAAG 1 cut(s) 504
EcoT14I CCWWGG 2 cut(s) 9, 143
ErhI CCWWGG 2 cut(s) 9, 143
FaeI CATG 3 cut(s) 13, 147, 544
FaqI GGGAC 1 cut(s) 72
FatI CATG 3 cut(s) 9, 143, 540
Fnu4HI GCNGC 2 cut(s) 169, 234
Fsp4HI GCNGC 2 cut(s) 169, 234
FspBI CTAG 2 cut(s) 131, 251
GluI GCNGC 2 cut(s) 169, 234
HgaI GACGC 1 cut(s) 197
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 3 cut(s) 13, 147, 544
HincII GTYRAC 1 cut(s) 56
HindII GTYRAC 1 cut(s) 56
HinfI GANTC 3 cut(s) 5, 431, 565
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 2 cut(s) 153, 628
Hpy188III TCNNGA 2 cut(s) 176, 426
Hpy8I GTNNAC 1 cut(s) 56
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 3 cut(s) 332, 419, 475
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 2 cut(s) 64, 168
HpyF3I CTNAG 3 cut(s) 229, 514, 606
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 3 cut(s) 13, 147, 544
Kzo9I GATC 2 cut(s) 82, 247
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 6 cut(s) 64, 274, 292, 326, 411, 507
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 1 cut(s) 600
MaeI CTAG 2 cut(s) 131, 251
MaeIII GTNAC 4 cut(s) 176, 394, 414, 559
MalI GATC 2 cut(s) 84, 249
MboI GATC 2 cut(s) 82, 247
MboII GAAGA 7 cut(s) 192, 206, 347, 359, 380, 426, 593
MfeI CAATTG 1 cut(s) 59
MluCI AATT 4 cut(s) 59, 92, 116, 284
MluI ACGCGT 1 cut(s) 448
MlyI GAGTC 1 cut(s) 559
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 4 cut(s) 52, 83, 545, 587
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 1 cut(s) 539
MunI CAATTG 1 cut(s) 59
MvnI CGCG 1 cut(s) 450
NcoI CCATGG 2 cut(s) 9, 143
NdeII GATC 2 cut(s) 82, 247
NlaIII CATG 3 cut(s) 13, 147, 544
NlaIV GGNNCC 1 cut(s) 311
NmuCI GTSAC 2 cut(s) 176, 394
PfeI GAWTC 1 cut(s) 431
PflFI GACNNNGTC 1 cut(s) 191
PkrI GCNGC 2 cut(s) 170, 235
PleI GAGTC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 559
PsiI TTATAA 1 cut(s) 637
PspN4I GGNNCC 1 cut(s) 311
PsyI GACNNNGTC 1 cut(s) 191
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 539
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 2 cut(s) 169, 234
Sau3AI GATC 2 cut(s) 82, 247
SchI GAGTC 1 cut(s) 559
SfaNI GCATC 1 cut(s) 600
SfcI CTRYAG 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 539
Sse9I AATT 4 cut(s) 59, 92, 116, 284
SsiI CCGC 2 cut(s) 234, 444
SspI AATATT 1 cut(s) 622
SspMI CTAG 2 cut(s) 131, 251
StyI CCWWGG 2 cut(s) 9, 143
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 579
TaqII GACCGA 1 cut(s) 413
TasI AATT 4 cut(s) 59, 92, 116, 284
TatI WGTACW 1 cut(s) 240
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 2 cut(s) 176, 394
TseI GCWGC 1 cut(s) 168
Tsp45I GTSAC 2 cut(s) 176, 394
TspGWI ACGGA 2 cut(s) 375, 402
TspRI CASTG 1 cut(s) 595
Tth111I GACNNNGTC 1 cut(s) 191
XapI RAATTY 1 cut(s) 284
XspI CTAG 2 cut(s) 131, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.