Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001508

Physical Location & Seq

Genomic Coordinates Reverse (-)

16895568 .. 16898469

Gene Structure 2902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG183000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCGATTGATGCCATTGAAGCTCCCTCTCCTCCATCTCTATCACCTTCCCATTTCAGTCAACAGCGCCACTTCTATCTCGCCGTCGACAGGCTCCAGTTCAAGTTGGAGACATTTATGGACCTCTTGGGCGTGGCGGGAAGGCGCCCCTGTCTTCCAATGGTGGTCTGCTGCAGCTCACGTGACGAACTCGACGCCGTCAGCTCCGCCGTCGCAACCGTCCCCTATATCTCTCTGGCCCCTCTGTACACTGACCTAGCTGAAGCAGACCGTGCTGCAATATTAGAGTCCTTCAAGCAAGCAACCATCAGGTGGAACCCAGAAGTTGGTGCTCAATCAGCTGATGACAGTGAGCCTGTGAAAGAGGAACAAAAATCTCATATGATAGTTGCTACAGATGCATGCATTCCGCTTCTTGCTTCTGGGGAGTCACCTATTTCTGCTCGTGTTCTTATAAACTATGAGTTACCTGCAAAGAAGGTCCGGTTCTATTTCTTCCCTTGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

Helicase_C

Protein Analysis

169

Amino Acids

18.67

Weight (kDa)

5.02

Isoelectric Point (pI)

64.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37020 AT4G37020
fragaria_vesca	FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950
malus_domestica	MD02G1301600.v1.1 MD02G1301800.v1.1 MD07G1022300.v1.1 MD17G1282900.v1.1
prunus_persica	Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1
pyrus_communis	pycom02g25340 pycom02g25350 pycom02g25400
rosa_chinensis	RchiOBHm_Chr2g0105351 RchiOBHm_Chr3g0472951
rosa_laevigata	RLG00000017419
rosa_multiflora	Rmu_co8381435.1_g000001 Rmu_sc0001407.1_g000022
rosa_roxburghii	Rroxscaffold_1G00022310 Rroxscaffold_2G00114060 Rroxscaffold_2G00126470 Rroxscaffold_2G00138270 Rroxscaffold_4G00312150 Rroxscaffold_4G00329030 Rroxscaffold_5G00344210 Rroxscaffold_5G00351740 Rroxscaffold_6G00388800 Rroxscaffold_6G00408610
rosa_rugosa	Rorug02G0127800 Rorug03G0292600
rosa_samantha	Rh1BG139100 Rh2AG178500 Rh2AG329700 Rh2BG186900 Rh2CG183000 Rh2DG184400 Rh3BG143700 Rh3BG208100 Rh3CG145000 Rh3DG145000 Rh3DG167900 Rh5DG241200 Rh5DG275600 Rh6DG097100 Rh6DG389000
rosa_wichuraiana	Rw2G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	478
AccB1I	GGYRCC	1 cut(s)	144
AccB7I	CCANNNNNTGG	2 cut(s)	312, 326
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	3 cut(s)	137, 207, 410
AcuI	CTGAAG	1 cut(s)	282
AcvI	CACGTG	1 cut(s)	182
AcyI	GRCGYC	2 cut(s)	145, 195
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	3 cut(s)	90, 312, 326
AgsI	TTSAA	3 cut(s)	20, 103, 295
AluBI	AGCT	5 cut(s)	23, 177, 204, 260, 341
AluI	AGCT	5 cut(s)	23, 177, 204, 260, 341
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	104
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	3 cut(s)	171, 174, 275
AspLEI	GCGC	2 cut(s)	69, 147
AspS9I	GGNCC	3 cut(s)	121, 238, 481
AsuHPI	GGTGA	2 cut(s)	36, 423
AvaII	GGWCC	2 cut(s)	121, 481
BanI	GGYRCC	1 cut(s)	144
BauI	CACGAG	1 cut(s)	444
BbrPI	CACGTG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	3 cut(s)	158, 186, 262
BccI	CCATC	2 cut(s)	43, 314
BceAI	ACGGC	3 cut(s)	68, 182, 194
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	257
BfmI	CTRYAG	2 cut(s)	172, 393
BfoI	RGCGCY	2 cut(s)	70, 148
BfuAI	ACCTGC	1 cut(s)	478
BisI	GCNGC	3 cut(s)	172, 175, 276
BlsI	GCNGC	3 cut(s)	173, 176, 277
Bme18I	GGWCC	2 cut(s)	121, 481
BmgT120I	GGNCC	3 cut(s)	121, 238, 481
BmiI	GGNNCC	4 cut(s)	95, 146, 240, 317
BmsI	GCATC	1 cut(s)	388
BpiI	GAAGAC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	80
BsaAI	YACGTR	1 cut(s)	182
BsaHI	GRCGYC	2 cut(s)	145, 195
BsaJI	CCNNGG	1 cut(s)	500
BsaWI	WCCGGW	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 312, 326
Bse1I	ACTGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	500
BseLI	CCNNNNNNNGG	3 cut(s)	90, 312, 326
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	3 cut(s)	158, 186, 262
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	484
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	3 cut(s)	90, 312, 326
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp1407I	TGTACA	1 cut(s)	246
BspACI	CCGC	3 cut(s)	137, 207, 410
BspANI	GGCC	1 cut(s)	239
BspLI	GGNNCC	4 cut(s)	95, 146, 240, 317
BspMAI	CTGCAG	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	478
BspT107I	GGYRCC	1 cut(s)	144
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	500
BssNI	GRCGYC	2 cut(s)	145, 195
BssSI	CACGAG	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	500
Bst2BI	CACGAG	1 cut(s)	444
Bst4CI	ACNGT	3 cut(s)	220, 272, 350
BstACI	GRCGYC	2 cut(s)	145, 195
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstAUI	TGTACA	1 cut(s)	246
BstBAI	YACGTR	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	300, 403
BstH2I	RGCGCY	2 cut(s)	70, 148
BstHHI	GCGC	2 cut(s)	69, 147
BstMAI	GTCTC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 272, 338, 398
BstNSI	RCATGY	1 cut(s)	405
BstSFI	CTRYAG	2 cut(s)	172, 393
BstV1I	GCAGC	3 cut(s)	158, 186, 262
BstV2I	GAAGAC	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	239
BtsIMutI	CAGTG	2 cut(s)	249, 355
BveI	ACCTGC	1 cut(s)	478
Cac8I	GCNNGC	2 cut(s)	300, 403
CfoI	GCGC	2 cut(s)	69, 147
Cfr13I	GGNCC	3 cut(s)	121, 238, 481
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	1 cut(s)	402
CviJI	RGCY	8 cut(s)	23, 94, 177, 204, 239, 260, 341, 355
CviKI_1	RGCY	8 cut(s)	23, 94, 177, 204, 239, 260, 341, 355
CviQI	GTAC	1 cut(s)	247
DinI	GGCGCC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	500
Eco47I	GGWCC	2 cut(s)	121, 481
Eco57I	CTGAAG	1 cut(s)	282
Eco72I	CACGTG	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	500
EcoT22I	ATGCAT	2 cut(s)	403, 407
EgeI	GGCGCC	1 cut(s)	146
EheI	GGCGCC	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	1 cut(s)	405
FaiI	YATR	7 cut(s)	119, 228, 381, 383, 403, 455, 462
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	1 cut(s)	401
FauI	CCCGC	1 cut(s)	130
FauNDI	CATATG	1 cut(s)	381
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	3 cut(s)	172, 175, 276
Fsp4HI	GCNGC	3 cut(s)	172, 175, 276
FspBI	CTAG	1 cut(s)	257
GlaI	GCGC	2 cut(s)	68, 146
GluI	GCNGC	3 cut(s)	172, 175, 276
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	2 cut(s)	70, 148
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	484
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	2 cut(s)	69, 147
Hin1I	GRCGYC	2 cut(s)	145, 195
Hin1II	CATG	1 cut(s)	405
Hin6I	GCGC	2 cut(s)	67, 145
HinP1I	GCGC	2 cut(s)	67, 145
HincII	GTYRAC	2 cut(s)	62, 88
HindII	GTYRAC	2 cut(s)	62, 88
HinfI	GANTC	2 cut(s)	287, 428
HpaII	CCGG	1 cut(s)	484
HphI	GGTGA	2 cut(s)	36, 423
Hpy166II	GTNNAC	3 cut(s)	62, 88, 249
Hpy8I	GTNNAC	3 cut(s)	62, 88, 249
Hpy99I	CGWCG	3 cut(s)	89, 197, 215
HpyAV	CCTTC	4 cut(s)	57, 135, 301, 472
HpyCH4III	ACNGT	3 cut(s)	220, 272, 350
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	5 cut(s)	174, 278, 401, 405, 473
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 272, 338, 398
HpySE526I	ACGT	1 cut(s)	181
Hsp92I	GRCGYC	2 cut(s)	145, 195
Hsp92II	CATG	1 cut(s)	405
HspAI	GCGC	2 cut(s)	67, 145
KasI	GGCGCC	1 cut(s)	144
LmnI	GCTCC	3 cut(s)	28, 99, 209
Lsp1109I	GCAGC	3 cut(s)	158, 186, 262
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	3 cut(s)	182, 429, 465
MboII	GAAGA	2 cut(s)	146, 487
MhlI	GDGCHC	1 cut(s)	334
Mly113I	GGCGCC	1 cut(s)	145
MlyI	GAGTC	2 cut(s)	296, 437
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	5 cut(s)	37, 42, 134, 252, 358
Mph1103I	ATGCAT	2 cut(s)	403, 407
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	1 cut(s)	484
Mva1269I	GAATGC	1 cut(s)	405
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 272, 338, 398
NarI	GGCGCC	1 cut(s)	145
NdeI	CATATG	1 cut(s)	381
NlaIII	CATG	1 cut(s)	405
NlaIV	GGNNCC	4 cut(s)	95, 146, 240, 317
NmuCI	GTSAC	2 cut(s)	182, 429
NsiI	ATGCAT	2 cut(s)	403, 407
NspI	RCATGY	1 cut(s)	405
PaeI	GCATGC	1 cut(s)	405
PctI	GAATGC	1 cut(s)	405
PflFI	GACNNNGTC	1 cut(s)	197
PflMI	CCANNNNNTGG	2 cut(s)	312, 326
PkrI	GCNGC	3 cut(s)	173, 176, 277
PleI	GAGTC	2 cut(s)	295, 436
PluTI	GGCGCC	1 cut(s)	148
PmaCI	CACGTG	1 cut(s)	182
PmlI	CACGTG	1 cut(s)	182
PpsI	GAGTC	2 cut(s)	295, 436
Ppu21I	YACGTR	1 cut(s)	182
PsiI	TTATAA	1 cut(s)	455
PspCI	CACGTG	1 cut(s)	182
PspN4I	GGNNCC	4 cut(s)	95, 146, 240, 317
PspPI	GGNCC	3 cut(s)	121, 238, 481
PstI	CTGCAG	1 cut(s)	176
PsyI	GACNNNGTC	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SalI	GTCGAC	1 cut(s)	86
SatI	GCNGC	3 cut(s)	172, 175, 276
Sau96I	GGNCC	3 cut(s)	121, 238, 481
SchI	GAGTC	2 cut(s)	296, 437
SduI	GDGCHC	1 cut(s)	334
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	2 cut(s)	172, 393
SfoI	GGCGCC	1 cut(s)	146
SinI	GGWCC	2 cut(s)	121, 481
SphI	GCATGC	1 cut(s)	405
SsiI	CCGC	3 cut(s)	137, 207, 410
SspDI	GGCGCC	1 cut(s)	144
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	3 cut(s)	220, 272, 350
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	2 cut(s)	87, 192
TatI	WGTACW	1 cut(s)	246
TscAI	CASTG	2 cut(s)	256, 355
TseFI	GTSAC	2 cut(s)	182, 429
TseI	GCWGC	3 cut(s)	171, 174, 275
Tsp45I	GTSAC	2 cut(s)	182, 429
TspRI	CASTG	2 cut(s)	256, 355
Tth111I	GACNNNGTC	1 cut(s)	197
Van91I	CCANNNNNTGG	2 cut(s)	312, 326
VpaK11BI	GGWCC	2 cut(s)	121, 481
XceI	RCATGY	1 cut(s)	405
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	257
Zsp2I	ATGCAT	2 cut(s)	403, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.