Rroxscaffold_2G00126470

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001508
Physical Location & Seq
Reverse (-)
61796436 .. 61801139
4704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00126470.1

Sequence Viewer

Length: 309 bp
ATGTCAAAGAGGGAGACAAACTTGGAAGTAGAAGCAGTTGAAGAGGACGAGAGCTTTAAAATTGATGCCAACAACTACGACATCTATGGACCTCTCTTCGAGAAAGCGTACGCCGGGAATTGGAAAGGCGTAACGGAGTTCATTATCCAACATCCCGAGGCGATAAGAGCGCTACATCCATCGGGGGGCACCACAATTCTTCAAAACGCGGTCATTGCCAATGAGGTGAAAATTGTAAAAGAATTGGTGCTGTTAATGAGAGAAAAAGAAGAGGTTGAAAGCCCAGTAGGAAACTACGGCGGCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

102

Amino Acids

11.39

Weight (kDa)

4.69

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AccII CGCG 1 cut(s) 209
AciI CCGC 2 cut(s) 209, 300
AfaI GTAC 1 cut(s) 110
AfeI AGCGCT 1 cut(s) 171
AfiI CCNNNNNNNGG 2 cut(s) 120, 185
AgsI TTSAA 3 cut(s) 41, 203, 278
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 8
Ama87I CYCGRG 1 cut(s) 155
Aor51HI AGCGCT 1 cut(s) 171
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 238
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 191
BanI GGYRCC 1 cut(s) 188
BccI CCATC 1 cut(s) 187
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 8
BfoI RGCGCY 1 cut(s) 173
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 115
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 55
BmuI ACTGGG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 185
Bse1I ACTGG 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 2 cut(s) 151, 175
BseLI CCNNNNNNNGG 2 cut(s) 120, 185
BseMI GCAATG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 188
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 1 cut(s) 114
BsiWI CGTACG 1 cut(s) 108
BslI CCNNNNNNNGG 2 cut(s) 120, 185
BsmAI GTCTC 1 cut(s) 8
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 191
BspACI CCGC 2 cut(s) 209, 300
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 190
BspT107I GGYRCC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 156
Bst6I CTCTTC 3 cut(s) 36, 101, 264
BstF5I GGATG 2 cut(s) 151, 175
BstFNI CGCG 1 cut(s) 209
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 8
BstMWI GCNNNNNNNGC 2 cut(s) 167, 215
BstSCI CCNGG 1 cut(s) 113
BstSLI GKGCMC 1 cut(s) 191
BstUI CGCG 1 cut(s) 209
BtsCI GGATG 2 cut(s) 151, 175
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 109
CviJI RGCY 2 cut(s) 54, 282
CviKI_1 RGCY 2 cut(s) 54, 282
CviQI GTAC 1 cut(s) 109
DraI TTTAAA 1 cut(s) 58
Eam1104I CTCTTC 3 cut(s) 36, 101, 264
EarI CTCTTC 3 cut(s) 36, 101, 264
Eco47I GGWCC 1 cut(s) 89
Eco47III AGCGCT 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 155
FaiI YATR 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 2 cut(s) 138, 162
Fsp4HI GCNGC 1 cut(s) 301
GlaI GCGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 301
HaeII RGCGCY 1 cut(s) 173
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 172
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 100, 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 215
HspAI GCGC 1 cut(s) 170
LpnPI CCDG 2 cut(s) 127, 297
LweI GCATC 1 cut(s) 55
MaeIII GTNAC 1 cut(s) 130
MboII GAAGA 4 cut(s) 53, 88, 191, 281
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 5 cut(s) 60, 118, 195, 231, 242
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 6 cut(s) 3, 37, 102, 151, 217, 265
MseI TTAA 2 cut(s) 57, 254
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 115
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 167, 215
NciI CCSGG 1 cut(s) 115
NlaIV GGNNCC 1 cut(s) 190
Pfl23II CGTACG 1 cut(s) 108
PkrI GCNGC 1 cut(s) 302
PspLI CGTACG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 89
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SaqAI TTAA 2 cut(s) 57, 254
SatI GCNGC 1 cut(s) 301
Sau96I GGNCC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 1 cut(s) 191
SetI ASST 4 cut(s) 56, 94, 228, 276
SfaNI GCATC 1 cut(s) 55
SinI GGWCC 1 cut(s) 89
Sse9I AATT 5 cut(s) 60, 118, 195, 231, 242
SsiI CCGC 2 cut(s) 209, 300
StyD4I CCNGG 1 cut(s) 113
TaqI TCGA 1 cut(s) 99
TasI AATT 5 cut(s) 60, 118, 195, 231, 242
TauI GCSGC 1 cut(s) 303
Tru1I TTAA 2 cut(s) 57, 254
Tru9I TTAA 2 cut(s) 57, 254
TspDTI ATGAA 1 cut(s) 130
TspGWI ACGGA 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.