Rh3CG145000

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001508
Physical Location & Seq
Reverse (-)
12055494 .. 12058904
3411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG145000.1

Sequence Viewer

Length: 321 bp
ATGCTTCTATTTCTCGAATCTTTTCTTTTTTTAATTGGAAAAAAAAAAATTTGTTCTGGTTGCAGTCAACAGCGCCACTTCTATCTCGCCGTCGACAGACTCCAGTTCAAGATGGAGACATTTATGGACCTGTTGGGCGTGGCGGGAAGGCGTCCTTGTCTTCCAATGGTGGTCTGCTACAGCTCACGTGAAGAACTCGACGCCGTCAGCTCCACCGTCGCAACCGTCCCCTATATCTCTTTAGCCCCTCTGGGTGCACCACTTTGCATTTACTATGCACAACGTGAGGCATGCAAATTTGGAGCATGCAACTACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 map03013 map03015 map03040
Pfam Domains
Protein Families
Helicase_C

Protein Analysis

106

Amino Acids

11.93

Weight (kDa)

8.5

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 93
AciI CCGC 1 cut(s) 143
AcsI RAATTY 2 cut(s) 48, 296
AcvI CACGTG 1 cut(s) 188
AcyI GRCGYC 2 cut(s) 151, 201
AdeI CACNNNGTG 1 cut(s) 284
AgsI TTSAA 1 cut(s) 109
AluBI AGCT 2 cut(s) 183, 210
AluI AGCT 2 cut(s) 183, 210
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 110
Alw44I GTGCAC 1 cut(s) 255
ApaLI GTGCAC 1 cut(s) 255
ApoI RAATTY 2 cut(s) 48, 296
Asp700I GAANNNNTTC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 127
AvaII GGWCC 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 259
BbrPI CACGTG 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 259
BccI CCATC 1 cut(s) 106
BceAI ACGGC 2 cut(s) 74, 188
BcoDI GTCTC 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 178
BfoI RGCGCY 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 86
BsaAI YACGTR 1 cut(s) 188
BsaHI GRCGYC 2 cut(s) 151, 201
Bse1I ACTGG 2 cut(s) 103, 316
BseNI ACTGG 2 cut(s) 103, 316
BseSI GKGCMC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 259
BslFI GGGAC 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 259
BspACI CCGC 1 cut(s) 143
BsrI ACTGG 2 cut(s) 103, 316
BssNI GRCGYC 2 cut(s) 151, 201
Bst4CI ACNGT 2 cut(s) 217, 226
BstACI GRCGYC 2 cut(s) 151, 201
BstBAI YACGTR 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 292, 307
BstH2I RGCGCY 1 cut(s) 76
BstHHI GCGC 1 cut(s) 75
BstMAI GTCTC 1 cut(s) 110
BstNSI RCATGY 2 cut(s) 294, 309
BstSFI CTRYAG 1 cut(s) 178
BstSLI GKGCMC 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 292, 307
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 127
CseI GACGC 2 cut(s) 140, 209
CviAII CATG 2 cut(s) 291, 306
CviJI RGCY 3 cut(s) 183, 210, 245
CviKI_1 RGCY 3 cut(s) 183, 210, 245
DraIII CACNNNGTG 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 127
Eco72I CACGTG 1 cut(s) 188
FaeI CATG 2 cut(s) 294, 309
FaiI YATR 5 cut(s) 125, 234, 276, 292, 307
FalI AAGNNNNNCTT 2 cut(s) 139, 171
FaqI GGGAC 1 cut(s) 212
FatI CATG 2 cut(s) 290, 305
FauI CCCGC 1 cut(s) 136
FblI GTMKAC 1 cut(s) 93
GlaI GCGC 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 86
HaeII RGCGCY 1 cut(s) 76
HgaI GACGC 2 cut(s) 140, 209
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 2 cut(s) 151, 201
Hin1II CATG 2 cut(s) 294, 309
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 2 cut(s) 68, 94
HindII GTYRAC 2 cut(s) 68, 94
HinfI GANTC 2 cut(s) 17, 99
Hpy166II GTNNAC 3 cut(s) 68, 94, 257
Hpy188III TCNNGA 2 cut(s) 14, 109
Hpy8I GTNNAC 3 cut(s) 68, 94, 257
Hpy99I CGWCG 3 cut(s) 95, 203, 221
HpyAV CCTTC 1 cut(s) 141
HpyCH4III ACNGT 2 cut(s) 217, 226
HpyCH4IV ACGT 2 cut(s) 187, 283
HpyCH4V TGCA 6 cut(s) 63, 257, 267, 278, 294, 309
HpySE526I ACGT 2 cut(s) 187, 283
Hsp92I GRCGYC 2 cut(s) 151, 201
Hsp92II CATG 2 cut(s) 294, 309
HspAI GCGC 1 cut(s) 73
LmnI GCTCC 2 cut(s) 215, 302
LpnPI CCDG 4 cut(s) 42, 116, 143, 236
MaeII ACGT 2 cut(s) 187, 283
MboII GAAGA 2 cut(s) 152, 203
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 3 cut(s) 33, 48, 296
MlyI GAGTC 1 cut(s) 93
MnlI CCTC 2 cut(s) 258, 280
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 1 cut(s) 32
NlaIII CATG 2 cut(s) 294, 309
NspI RCATGY 2 cut(s) 294, 309
PaeI GCATGC 2 cut(s) 294, 309
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 17
PflFI GACNNNGTC 1 cut(s) 203
PleI GAGTC 1 cut(s) 93
PmaCI CACGTG 1 cut(s) 188
PmlI CACGTG 1 cut(s) 188
PpsI GAGTC 1 cut(s) 93
Ppu21I YACGTR 1 cut(s) 188
PspCI CACGTG 1 cut(s) 188
PspPI GGNCC 1 cut(s) 127
PsyI GACNNNGTC 1 cut(s) 203
SalI GTCGAC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 32
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 93
SduI GDGCHC 1 cut(s) 259
SetI ASST 5 cut(s) 132, 185, 190, 212, 286
SfcI CTRYAG 1 cut(s) 178
SinI GGWCC 1 cut(s) 127
SphI GCATGC 2 cut(s) 294, 309
Sse9I AATT 3 cut(s) 33, 48, 296
SsiI CCGC 1 cut(s) 143
TaaI ACNGT 2 cut(s) 217, 226
TaiI ACGT 2 cut(s) 190, 286
TaqI TCGA 3 cut(s) 15, 93, 198
TasI AATT 3 cut(s) 33, 48, 296
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
Tth111I GACNNNGTC 1 cut(s) 203
VneI GTGCAC 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 2 cut(s) 48, 296
XceI RCATGY 2 cut(s) 294, 309
XmiI GTMKAC 1 cut(s) 93
XmnI GAANNNNTTC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.