Rh1BG139100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001508
Physical Location & Seq
Forward (+)
23142060 .. 23150001
7942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG139100.1

Sequence Viewer

Length: 507 bp
ATGGCACAACACTCAAAAGAAGACCATCCAGTTCAGTACGCGACTAGGAACGTCGACCCTGCGAGTTTCGCGGTCGTTCGACCACCAAAGACCGTTGGGCTGGTCGCGTTCAGCGCGCCTCTCCACGGAGACCGAGCCTTTGGCCACCATCAGCTCCGATTTGCATCGAGAATGGAAAATCAAACATTTGACATAGTTGGACCCTTAGGTCAGCTTGAGCTGCCCAACCACGATTGCAACCCAACCGATTCCGGCCACCCCTGGTCGGCGTACCGGAGGTGCTTGAATCCTCTAGGCGGCATGAACCACTCTCAGTTCAAAGTGAATGGCACAAAGATGATCGAGGCCTCGAGGGCGTTGAAATATGAGGTTGAACAATATGACCAAGAACCTGGGAACGAAGATAGGATATCTTGGAATTTGGCTGTTAAGGTTGTCAACGAGCACCAGGCTGCTAGGGGTCCGCCTAGGATGGCTAGGCGGATCCAGACTGGGGCTGGGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.79

Weight (kDa)

9.03

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 207
AbsI CCTCGAGG 1 cut(s) 349
AccI GTMKAC 1 cut(s) 54
AccII CGCG 4 cut(s) 41, 71, 107, 116
AciI CCGC 4 cut(s) 71, 297, 464, 481
AclWI GGATC 2 cut(s) 478, 491
AcoI YGGCCR 2 cut(s) 142, 253
AcsI RAATTY 1 cut(s) 418
AfaI GTAC 2 cut(s) 38, 272
AfiI CCNNNNNNNGG 4 cut(s) 125, 265, 296, 493
AgsI TTSAA 4 cut(s) 286, 319, 361, 374
AjnI CCWGG 3 cut(s) 260, 391, 447
AluBI AGCT 3 cut(s) 154, 214, 220
AluI AGCT 3 cut(s) 154, 214, 220
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 2 cut(s) 478, 491
Ama87I CYCGRG 1 cut(s) 349
AoxI GGCC 3 cut(s) 142, 253, 345
ApeKI GCWGC 2 cut(s) 220, 452
ApoI RAATTY 1 cut(s) 418
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AspA2I CCTAGG 1 cut(s) 467
AspLEI GCGC 3 cut(s) 116, 118, 504
AspS9I GGNCC 2 cut(s) 200, 461
AvaI CYCGRG 1 cut(s) 349
AvaII GGWCC 2 cut(s) 200, 461
AvrII CCTAGG 1 cut(s) 467
AxyI CCTNAGG 1 cut(s) 205
BalI TGGCCA 1 cut(s) 144
BamHI GGATCC 1 cut(s) 483
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 2 cut(s) 207, 439
BccI CCATC 3 cut(s) 33, 156, 466
BciT130I CCWGG 3 cut(s) 262, 393, 449
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 6 cut(s) 45, 293, 456, 468, 477, 505
BfoI RGCGCY 1 cut(s) 505
BglI GCCNNNNNGGC 1 cut(s) 353
BisI GCNGC 3 cut(s) 221, 298, 453
BlnI CCTAGG 1 cut(s) 467
BlsI GCNGC 3 cut(s) 222, 299, 454
Bme1390I CCNGG 3 cut(s) 262, 393, 449
Bme18I GGWCC 2 cut(s) 200, 461
BmeT110I CYCGRG 1 cut(s) 349
BmgT120I GGNCC 2 cut(s) 200, 461
BmiI GGNNCC 3 cut(s) 202, 462, 485
BmrFI CCNGG 3 cut(s) 262, 393, 449
BmrI ACTGGG 1 cut(s) 501
BmsI GCATC 1 cut(s) 173
BmuI ACTGGG 1 cut(s) 501
BpiI GAAGAC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 236
BsaBI GATNNNNATC 1 cut(s) 163
BsaI GGTCTC 1 cut(s) 123
BsaJI CCNNGG 4 cut(s) 124, 260, 392, 467
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 265, 296, 493
Bse1I ACTGG 2 cut(s) 29, 496
Bse21I CCTNAGG 1 cut(s) 205
Bse8I GATNNNNATC 1 cut(s) 163
BseBI CCWGG 3 cut(s) 262, 393, 449
BseDI CCNNGG 4 cut(s) 124, 260, 392, 467
BseGI GGATG 2 cut(s) 25, 477
BseJI GATNNNNATC 1 cut(s) 163
BseLI CCNNNNNNNGG 4 cut(s) 125, 265, 296, 493
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 2 cut(s) 29, 496
BsePI GCGCGC 1 cut(s) 114
BseXI GCAGC 2 cut(s) 207, 439
BseYI CCCAGC 1 cut(s) 497
Bsh1236I CGCG 4 cut(s) 41, 71, 107, 116
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 3 cut(s) 144, 255, 347
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 447
BsiHKCI CYCGRG 1 cut(s) 349
BsiSI CCGG 2 cut(s) 252, 274
BslI CCNNNNNNNGG 4 cut(s) 125, 265, 296, 493
BsmAI GTCTC 1 cut(s) 123
BsnI GGCC 3 cut(s) 144, 255, 347
Bso31I GGTCTC 1 cut(s) 123
BsoBI CYCGRG 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 2 cut(s) 339, 483
BspACI CCGC 4 cut(s) 71, 297, 464, 481
BspANI GGCC 3 cut(s) 144, 255, 347
BspCNI CTCAG 1 cut(s) 325
BspFNI CGCG 4 cut(s) 41, 71, 107, 116
BspLI GGNNCC 3 cut(s) 202, 462, 485
BspPI GGATC 2 cut(s) 478, 491
BspTNI GGTCTC 1 cut(s) 123
BsrI ACTGG 2 cut(s) 29, 496
BssECI CCNNGG 4 cut(s) 124, 260, 392, 467
BssHII GCGCGC 1 cut(s) 114
BssMI GATC 2 cut(s) 339, 483
BssT1I CCWWGG 1 cut(s) 467
Bst2UI CCWGG 3 cut(s) 262, 393, 449
Bst4CI ACNGT 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 2 cut(s) 205, 312
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 2 cut(s) 25, 477
BstFNI CGCG 4 cut(s) 41, 71, 107, 116
BstH2I RGCGCY 1 cut(s) 505
BstHHI GCGC 3 cut(s) 116, 118, 504
BstKTI GATC 2 cut(s) 342, 486
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 339, 483
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 4 cut(s) 68, 113, 220, 353
BstNI CCWGG 3 cut(s) 262, 393, 449
BstSCI CCNGG 3 cut(s) 260, 391, 447
BstUI CGCG 4 cut(s) 41, 71, 107, 116
BstV1I GCAGC 2 cut(s) 207, 439
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 483
BstXI CCANNNNNNTGG 1 cut(s) 392
BstYI RGATCY 1 cut(s) 483
Bsu36I CCTNAGG 1 cut(s) 205
BsuRI GGCC 3 cut(s) 144, 255, 347
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 2 cut(s) 25, 477
Cac8I GCNNGC 1 cut(s) 116
CfoI GCGC 3 cut(s) 116, 118, 504
Cfr13I GGNCC 2 cut(s) 200, 461
Csp6I GTAC 2 cut(s) 37, 271
CviAII CATG 1 cut(s) 301
CviQI GTAC 2 cut(s) 37, 271
DdeI CTNAG 2 cut(s) 205, 312
DpnI GATC 2 cut(s) 341, 485
DpnII GATC 2 cut(s) 339, 483
DrdI GACNNNNNNGTC 1 cut(s) 207
DseDI GACNNNNNNGTC 1 cut(s) 207
EaeI YGGCCR 2 cut(s) 142, 253
EciI GGCGGA 2 cut(s) 453, 496
Eco130I CCWWGG 1 cut(s) 467
Eco147I AGGCCT 1 cut(s) 347
Eco31I GGTCTC 1 cut(s) 123
Eco32I GATATC 1 cut(s) 411
Eco47I GGWCC 2 cut(s) 200, 461
Eco81I CCTNAGG 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 349
EcoRII CCWGG 3 cut(s) 260, 391, 447
EcoRV GATATC 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 467
ErhI CCWWGG 1 cut(s) 467
FaeI CATG 1 cut(s) 304
FaiI YATR 4 cut(s) 194, 302, 366, 381
FatI CATG 1 cut(s) 300
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 3 cut(s) 221, 298, 453
FokI GGATG 2 cut(s) 12, 484
Fsp4HI GCNGC 3 cut(s) 221, 298, 453
FspBI CTAG 6 cut(s) 45, 293, 456, 468, 477, 505
GlaI GCGC 3 cut(s) 115, 117, 503
GluI GCNGC 3 cut(s) 221, 298, 453
GsaI CCCAGC 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 505
HaeIII GGCC 3 cut(s) 144, 255, 347
HapII CCGG 2 cut(s) 252, 274
HhaI GCGC 3 cut(s) 116, 118, 504
Hin1II CATG 1 cut(s) 304
Hin6I GCGC 3 cut(s) 114, 116, 502
HinP1I GCGC 3 cut(s) 114, 116, 502
HincII GTYRAC 2 cut(s) 55, 439
HindII GTYRAC 2 cut(s) 55, 439
HinfI GANTC 2 cut(s) 248, 286
HpaII CCGG 2 cut(s) 252, 274
Hpy166II GTNNAC 2 cut(s) 55, 439
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 2 cut(s) 168, 487
Hpy8I GTNNAC 2 cut(s) 55, 439
Hpy99I CGWCG 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 164, 237
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 113, 220, 353
HpyF3I CTNAG 2 cut(s) 205, 312
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 1 cut(s) 304
HspAI GCGC 3 cut(s) 114, 116, 502
Kzo9I GATC 2 cut(s) 339, 483
LmnI GCTCC 1 cut(s) 159
Lsp1109I GCAGC 2 cut(s) 207, 439
LweI GCATC 1 cut(s) 173
MaeI CTAG 6 cut(s) 45, 293, 456, 468, 477, 505
MaeII ACGT 1 cut(s) 51
MalI GATC 2 cut(s) 341, 485
MboI GATC 2 cut(s) 339, 483
MboII GAAGA 2 cut(s) 32, 413
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 447
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 1 cut(s) 418
MluNI TGGCCA 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 7 cut(s) 129, 270, 300, 337, 345, 358, 361
Mox20I TGGCCA 1 cut(s) 144
MscI TGGCCA 1 cut(s) 144
MseI TTAA 1 cut(s) 429
MslI CAYNNNNRTG 1 cut(s) 335
Msp20I TGGCCA 1 cut(s) 144
MspI CCGG 2 cut(s) 252, 274
MspR9I CCNGG 3 cut(s) 262, 393, 449
MvaI CCWGG 3 cut(s) 262, 393, 449
MvnI CGCG 4 cut(s) 41, 71, 107, 116
MwoI GCNNNNNNNGC 4 cut(s) 68, 113, 220, 353
NdeII GATC 2 cut(s) 339, 483
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 3 cut(s) 202, 462, 485
PaeR7I CTCGAG 1 cut(s) 349
PauI GCGCGC 1 cut(s) 114
PceI AGGCCT 1 cut(s) 347
PfeI GAWTC 2 cut(s) 248, 286
PkrI GCNGC 3 cut(s) 222, 299, 454
Psp6I CCWGG 3 cut(s) 260, 391, 447
PspFI CCCAGC 1 cut(s) 497
PspGI CCWGG 3 cut(s) 260, 391, 447
PspN4I GGNNCC 3 cut(s) 202, 462, 485
PspPI GGNCC 2 cut(s) 200, 461
PspXI VCTCGAGB 1 cut(s) 349
PsuI RGATCY 1 cut(s) 483
PteI GCGCGC 1 cut(s) 114
RsaI GTAC 2 cut(s) 38, 272
RsaNI GTAC 2 cut(s) 37, 271
RseI CAYNNNNRTG 1 cut(s) 335
SalI GTCGAC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 3 cut(s) 221, 298, 453
Sau3AI GATC 2 cut(s) 339, 483
Sau96I GGNCC 2 cut(s) 200, 461
ScrFI CCNGG 3 cut(s) 262, 393, 449
SduI GDGCHC 1 cut(s) 447
SetI ASST 9 cut(s) 54, 156, 211, 216, 222, 281, 372, 394, 435
SfaNI GCATC 1 cut(s) 173
Sfr274I CTCGAG 1 cut(s) 349
SinI GGWCC 2 cut(s) 200, 461
SlaI CTCGAG 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 2 cut(s) 215, 349
SmoI CTYRAG 2 cut(s) 215, 349
Sse9I AATT 1 cut(s) 418
SseBI AGGCCT 1 cut(s) 347
SsiI CCGC 4 cut(s) 71, 297, 464, 481
SspMI CTAG 6 cut(s) 45, 293, 456, 468, 477, 505
StuI AGGCCT 1 cut(s) 347
StyD4I CCNGG 3 cut(s) 260, 391, 447
StyI CCWWGG 1 cut(s) 467
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 54
TaqI TCGA 5 cut(s) 54, 79, 167, 342, 350
TaqII GACCGA 1 cut(s) 147
TasI AATT 1 cut(s) 418
TauI GCSGC 1 cut(s) 300
TfiI GAWTC 2 cut(s) 248, 286
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TseI GCWGC 2 cut(s) 220, 452
TspDTI ATGAA 1 cut(s) 317
TspGWI ACGGA 1 cut(s) 141
VpaK11BI GGWCC 2 cut(s) 200, 461
XapI RAATTY 1 cut(s) 418
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XhoI CTCGAG 1 cut(s) 349
XmaJI CCTAGG 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 6 cut(s) 45, 293, 456, 468, 477, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.