Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001508

Physical Location & Seq

Genomic Coordinates Reverse (-)

12205669 .. 12213347

Gene Structure 7679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG143700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGACAGGATTTGGAAAGATTTCAGACTTTTTCCATTCAATGGTTGCAGAGGTCTTCGCCATTGAAGCTCCCTCTCCTCCATCTCCATCACCTTCCCATTTCAGTCAACAGCGCCACTTCTATCTCGCCGTCGACAGACTCCAGTTCAAGATGGAGACATTTATGGACCTGTTGGGCGTGGCGGGAAGGCGTCCTTGTCTTCCAATGGTGGTCTGCTACAGCTCACGTGAAGAACTCGACGCCGTCAGCTCCACCGTCGCAACCGTCCCCTATATCTCTTTAGCCCCTCTGGGTGCACCACTTTGCATTTACTATGCACAACGTGAGGCATGCAAATTTGGAGCATGCAACTACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

Helicase_C

Protein Analysis

119

Amino Acids

13.2

Weight (kDa)

6.25

Isoelectric Point (pI)

69.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37020 AT4G37020
fragaria_vesca	FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950
malus_domestica	MD02G1301600.v1.1 MD02G1301800.v1.1 MD07G1022300.v1.1 MD17G1282900.v1.1
prunus_persica	Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1
pyrus_communis	pycom02g25340 pycom02g25350 pycom02g25400
rosa_chinensis	RchiOBHm_Chr2g0105351 RchiOBHm_Chr3g0472951
rosa_laevigata	RLG00000017419
rosa_multiflora	Rmu_co8381435.1_g000001 Rmu_sc0001407.1_g000022
rosa_roxburghii	Rroxscaffold_1G00022310 Rroxscaffold_2G00114060 Rroxscaffold_2G00126470 Rroxscaffold_2G00138270 Rroxscaffold_4G00312150 Rroxscaffold_4G00329030 Rroxscaffold_5G00344210 Rroxscaffold_5G00351740 Rroxscaffold_6G00388800 Rroxscaffold_6G00408610
rosa_rugosa	Rorug02G0127800 Rorug03G0292600
rosa_samantha	Rh1BG139100 Rh2AG178500 Rh2AG329700 Rh2BG186900 Rh2CG183000 Rh2DG184400 Rh3BG143700 Rh3BG208100 Rh3CG145000 Rh3DG145000 Rh3DG167900 Rh5DG241200 Rh5DG275600 Rh6DG097100 Rh6DG389000
rosa_wichuraiana	Rw2G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	132
AciI	CCGC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	335
AcvI	CACGTG	1 cut(s)	227
AcyI	GRCGYC	2 cut(s)	190, 240
AdeI	CACNNNGTG	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	3 cut(s)	39, 65, 148
AluBI	AGCT	3 cut(s)	68, 222, 249
AluI	AGCT	3 cut(s)	68, 222, 249
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	149
Alw44I	GTGCAC	1 cut(s)	294
ApaLI	GTGCAC	1 cut(s)	294
ApoI	RAATTY	1 cut(s)	335
Asp700I	GAANNNNTTC	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	81
AvaII	GGWCC	1 cut(s)	166
BaeGI	GKGCMC	1 cut(s)	298
BbrPI	CACGTG	1 cut(s)	227
BbsI	GAAGAC	2 cut(s)	46, 191
Bbv12I	GWGCWC	1 cut(s)	298
BccI	CCATC	3 cut(s)	88, 94, 145
BceAI	ACGGC	2 cut(s)	113, 227
BcoDI	GTCTC	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	217
BfoI	RGCGCY	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BpiI	GAAGAC	2 cut(s)	46, 191
BpmI	CTGGAG	1 cut(s)	125
BsaAI	YACGTR	1 cut(s)	227
BsaHI	GRCGYC	2 cut(s)	190, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	142, 355
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseNI	ACTGG	2 cut(s)	142, 355
BseRI	GAGGAG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	298
BspACI	CCGC	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	142, 355
BssNI	GRCGYC	2 cut(s)	190, 240
Bst4CI	ACNGT	2 cut(s)	256, 265
BstACI	GRCGYC	2 cut(s)	190, 240
BstBAI	YACGTR	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	331, 346
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstMAI	GTCTC	1 cut(s)	149
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNSI	RCATGY	2 cut(s)	333, 348
BstSFI	CTRYAG	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	298
BstV2I	GAAGAC	2 cut(s)	46, 191
Cac8I	GCNNGC	2 cut(s)	331, 346
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	166
CseI	GACGC	2 cut(s)	179, 248
CviAII	CATG	2 cut(s)	330, 345
CviJI	RGCY	4 cut(s)	68, 222, 249, 284
CviKI_1	RGCY	4 cut(s)	68, 222, 249, 284
DraIII	CACNNNGTG	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	166
Eco72I	CACGTG	1 cut(s)	227
FaeI	CATG	2 cut(s)	333, 348
FaiI	YATR	5 cut(s)	164, 273, 315, 331, 346
FalI	AAGNNNNNCTT	2 cut(s)	178, 210
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	2 cut(s)	329, 344
FauI	CCCGC	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	132
GlaI	GCGC	1 cut(s)	113
GsuI	CTGGAG	1 cut(s)	125
HaeII	RGCGCY	1 cut(s)	115
HgaI	GACGC	2 cut(s)	179, 248
HhaI	GCGC	1 cut(s)	114
Hin1I	GRCGYC	2 cut(s)	190, 240
Hin1II	CATG	2 cut(s)	333, 348
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	2 cut(s)	107, 133
HindII	GTYRAC	2 cut(s)	107, 133
HinfI	GANTC	1 cut(s)	138
HphI	GGTGA	1 cut(s)	81
Hpy166II	GTNNAC	3 cut(s)	107, 133, 296
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	3 cut(s)	107, 133, 296
Hpy99I	CGWCG	3 cut(s)	134, 242, 260
HpyAV	CCTTC	2 cut(s)	102, 180
HpyCH4III	ACNGT	2 cut(s)	256, 265
HpyCH4IV	ACGT	2 cut(s)	226, 322
HpyCH4V	TGCA	6 cut(s)	47, 296, 306, 317, 333, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpySE526I	ACGT	2 cut(s)	226, 322
Hsp92I	GRCGYC	2 cut(s)	190, 240
Hsp92II	CATG	2 cut(s)	333, 348
HspAI	GCGC	1 cut(s)	112
LmnI	GCTCC	3 cut(s)	73, 254, 341
LpnPI	CCDG	3 cut(s)	155, 182, 275
MaeII	ACGT	2 cut(s)	226, 322
MboII	GAAGA	3 cut(s)	46, 191, 242
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	132
MnlI	CCTC	5 cut(s)	43, 82, 87, 297, 319
MroXI	GAANNNNTTC	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	65
NlaIII	CATG	2 cut(s)	333, 348
NspI	RCATGY	2 cut(s)	333, 348
PaeI	GCATGC	2 cut(s)	333, 348
PdmI	GAANNNNTTC	1 cut(s)	19
PflFI	GACNNNGTC	1 cut(s)	242
PflMI	CCANNNNNTGG	1 cut(s)	40
PleI	GAGTC	1 cut(s)	132
PmaCI	CACGTG	1 cut(s)	227
PmlI	CACGTG	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	132
Ppu21I	YACGTR	1 cut(s)	227
PspCI	CACGTG	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	242
SalI	GTCGAC	1 cut(s)	131
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	8 cut(s)	54, 70, 94, 171, 224, 229, 251, 325
SfcI	CTRYAG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	166
SphI	GCATGC	2 cut(s)	333, 348
Sse9I	AATT	1 cut(s)	335
SsiI	CCGC	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	256, 265
TaiI	ACGT	2 cut(s)	229, 325
TaqI	TCGA	2 cut(s)	132, 237
TasI	AATT	1 cut(s)	335
Tth111I	GACNNNGTC	1 cut(s)	242
Van91I	CCANNNNNTGG	1 cut(s)	40
VneI	GTGCAC	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	2 cut(s)	333, 348
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.