Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001508

Physical Location & Seq

Genomic Coordinates Reverse (-)

9074218 .. 9076717

Gene Structure 2500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15950.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCGATTGATGCCGCTGAAACTCCCTCTCCTCCGTCTCTGTCACCTTCCCATTTCAGTCAACAGCGCCACTTCTATCTCGCCGTCGACAGAATCCAGTTCAAGATGGAGACATTCATGGACCTGTTGGGCGTGGCGGGAAGGCGTCCCTGTCTTCCGATAGTGGTCTGCTGCAGCTCACGTGATGAGCTTGACGCCGTGAGCTCCGCCGTCGCAAGCGTACCTTATATCTCTTTCGCCCCTCTGTACAGTGACCTTGCTGAAGCAGACCGTGCTACGATATTAGAGTCCTTCAAGCAAGCAACCATCAGGTGGAACTCAGAAGTTGGTGCTCAATCAGCTGATGACAGTGCGCTGGTGAAAGAGGAACAAAAATCTCATATGATAGTTGCCACAGATGCATGCCTTCCACTTCTGGCTTCTGGGGAGTCGCCTATTTCTGCTTGTGTTCTCATAAACTATGAGTTACCAGCAAAAAAGGAAATATATACGAGGCGTATGGCGACTTGTTTAGCTGCAGATGGCATTGTAATCAATATGGTTGTTGGGGGTGAGGTAGTAACTCTCAGAAGTATTGAAGAAAGCATTAACCTAGTCATAGCTGAGATGCCGATAAATATTTCTGAGATTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

Helicase_C

Protein Analysis

212

Amino Acids

22.88

Weight (kDa)

4.68

Isoelectric Point (pI)

67.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37020 AT4G37020
fragaria_vesca	FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950
malus_domestica	MD02G1301600.v1.1 MD02G1301800.v1.1 MD07G1022300.v1.1 MD17G1282900.v1.1
prunus_persica	Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1
pyrus_communis	pycom02g25340 pycom02g25350 pycom02g25400
rosa_chinensis	RchiOBHm_Chr2g0105351 RchiOBHm_Chr3g0472951
rosa_laevigata	RLG00000017419
rosa_multiflora	Rmu_co8381435.1_g000001 Rmu_sc0001407.1_g000022
rosa_roxburghii	Rroxscaffold_1G00022310 Rroxscaffold_2G00114060 Rroxscaffold_2G00126470 Rroxscaffold_2G00138270 Rroxscaffold_4G00312150 Rroxscaffold_4G00329030 Rroxscaffold_5G00344210 Rroxscaffold_5G00351740 Rroxscaffold_6G00388800 Rroxscaffold_6G00408610
rosa_rugosa	Rorug02G0127800 Rorug03G0292600
rosa_samantha	Rh1BG139100 Rh2AG178500 Rh2AG329700 Rh2BG186900 Rh2CG183000 Rh2DG184400 Rh3BG143700 Rh3BG208100 Rh3CG145000 Rh3DG145000 Rh3DG167900 Rh5DG241200 Rh5DG275600 Rh6DG097100 Rh6DG389000
rosa_wichuraiana	Rw2G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	3 cut(s)	15, 137, 207
AcuI	CTGAAG	1 cut(s)	282
AcvI	CACGTG	1 cut(s)	182
AcyI	GRCGYC	2 cut(s)	145, 195
AfaI	GTAC	2 cut(s)	222, 248
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	3 cut(s)	103, 295, 578
AluBI	AGCT	6 cut(s)	177, 190, 204, 341, 515, 602
AluI	AGCT	6 cut(s)	177, 190, 204, 341, 515, 602
Alw21I	GWGCWC	2 cut(s)	206, 334
Alw26I	GTCTC	2 cut(s)	42, 104
ApeKI	GCWGC	3 cut(s)	171, 174, 515
AspLEI	GCGC	2 cut(s)	69, 355
AspS9I	GGNCC	1 cut(s)	121
AsuHPI	GGTGA	3 cut(s)	36, 370, 563
AvaII	GGWCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	206
BbrPI	CACGTG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	2 cut(s)	206, 334
BbvI	GCAGC	3 cut(s)	158, 186, 502
BccI	CCATC	3 cut(s)	100, 314, 515
BceAI	ACGGC	3 cut(s)	68, 182, 194
BcoDI	GTCTC	2 cut(s)	42, 104
BfaI	CTAG	1 cut(s)	593
BfmI	CTRYAG	2 cut(s)	172, 516
BfoI	RGCGCY	1 cut(s)	70
BisI	GCNGC	4 cut(s)	15, 172, 175, 516
BlsI	GCNGC	4 cut(s)	16, 173, 176, 517
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	121
BmsI	GCATC	2 cut(s)	388, 597
BpiI	GAAGAC	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	182
BsaHI	GRCGYC	2 cut(s)	145, 195
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	4 cut(s)	333, 580, 594, 615
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	3 cut(s)	158, 186, 502
BsiHKAI	GWGCWC	2 cut(s)	206, 334
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	2 cut(s)	42, 104
BsmBI	CGTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	206, 334
Bsp1407I	TGTACA	1 cut(s)	246
BspACI	CCGC	3 cut(s)	15, 137, 207
BspCNI	CTCAG	4 cut(s)	332, 579, 595, 616
BspMAI	CTGCAG	2 cut(s)	176, 520
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	97
BssNI	GRCGYC	2 cut(s)	145, 195
Bst4CI	ACNGT	3 cut(s)	251, 272, 350
BstACI	GRCGYC	2 cut(s)	145, 195
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstAUI	TGTACA	1 cut(s)	246
BstBAI	YACGTR	1 cut(s)	182
BstC8I	GCNNGC	3 cut(s)	217, 300, 403
BstDEI	CTNAG	4 cut(s)	319, 566, 603, 624
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	69, 355
BstMAI	GTCTC	2 cut(s)	42, 104
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 272, 338, 398
BstNSI	RCATGY	1 cut(s)	405
BstSFI	CTRYAG	2 cut(s)	172, 516
BstV1I	GCAGC	3 cut(s)	158, 186, 502
BstV2I	GAAGAC	1 cut(s)	146
BtsIMutI	CAGTG	2 cut(s)	256, 355
Cac8I	GCNNGC	3 cut(s)	217, 300, 403
CfoI	GCGC	2 cut(s)	69, 355
Cfr13I	GGNCC	1 cut(s)	121
CseI	GACGC	2 cut(s)	134, 203
Csp6I	GTAC	2 cut(s)	221, 247
CviAII	CATG	2 cut(s)	118, 402
CviJI	RGCY	7 cut(s)	177, 190, 204, 341, 419, 515, 602
CviKI_1	RGCY	7 cut(s)	177, 190, 204, 341, 419, 515, 602
CviQI	GTAC	2 cut(s)	221, 247
DdeI	CTNAG	4 cut(s)	319, 566, 603, 624
EciI	GGCGGA	1 cut(s)	196
Ecl136II	GAGCTC	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	282
Eco72I	CACGTG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	204
EcoT22I	ATGCAT	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	206
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	2 cut(s)	121, 405
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	2 cut(s)	117, 401
FauI	CCCGC	1 cut(s)	130
FauNDI	CATATG	1 cut(s)	381
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	4 cut(s)	15, 172, 175, 516
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	4 cut(s)	15, 172, 175, 516
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	2 cut(s)	68, 354
GluI	GCNGC	4 cut(s)	15, 172, 175, 516
HaeII	RGCGCY	1 cut(s)	70
HgaI	GACGC	2 cut(s)	134, 203
HhaI	GCGC	2 cut(s)	69, 355
Hin1I	GRCGYC	2 cut(s)	145, 195
Hin1II	CATG	2 cut(s)	121, 405
Hin6I	GCGC	2 cut(s)	67, 353
HinP1I	GCGC	2 cut(s)	67, 353
HincII	GTYRAC	2 cut(s)	62, 88
HindII	GTYRAC	2 cut(s)	62, 88
HinfI	GANTC	3 cut(s)	93, 287, 428
HphI	GGTGA	3 cut(s)	36, 370, 563
Hpy166II	GTNNAC	2 cut(s)	62, 88
Hpy188I	TCNGA	4 cut(s)	159, 322, 569, 625
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	2 cut(s)	62, 88
Hpy99I	CGWCG	2 cut(s)	89, 215
HpyAV	CCTTC	4 cut(s)	57, 135, 301, 416
HpyCH4III	ACNGT	3 cut(s)	251, 272, 350
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	3 cut(s)	174, 401, 518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 272, 338, 398
HpyF3I	CTNAG	4 cut(s)	319, 566, 603, 624
HpySE526I	ACGT	1 cut(s)	181
Hsp92I	GRCGYC	2 cut(s)	145, 195
Hsp92II	CATG	2 cut(s)	121, 405
HspAI	GCGC	2 cut(s)	67, 353
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	8 cut(s)	110, 137, 163, 295, 341, 401, 408, 483
Lsp1109I	GCAGC	3 cut(s)	158, 186, 502
LweI	GCATC	2 cut(s)	388, 597
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	4 cut(s)	42, 251, 465, 559
MboII	GAAGA	2 cut(s)	146, 590
MhlI	GDGCHC	2 cut(s)	206, 334
MlyI	GAGTC	2 cut(s)	296, 437
MnlI	CCTC	6 cut(s)	37, 42, 252, 358, 486, 547
Mph1103I	ATGCAT	1 cut(s)	403
MseI	TTAA	1 cut(s)	588
MspA1I	CMGCKG	2 cut(s)	17, 341
MwoI	GCNNNNNNNGC	4 cut(s)	11, 272, 338, 398
NdeI	CATATG	1 cut(s)	381
NlaIII	CATG	2 cut(s)	121, 405
NmuCI	GTSAC	2 cut(s)	42, 251
NsiI	ATGCAT	1 cut(s)	403
NspI	RCATGY	1 cut(s)	405
PaeI	GCATGC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	93
PflMI	CCANNNNNTGG	1 cut(s)	312
PkrI	GCNGC	4 cut(s)	16, 173, 176, 517
PleI	GAGTC	2 cut(s)	295, 436
PmaCI	CACGTG	1 cut(s)	182
PmlI	CACGTG	1 cut(s)	182
PpsI	GAGTC	2 cut(s)	295, 436
Ppu21I	YACGTR	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	206
PspCI	CACGTG	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	121
PstI	CTGCAG	2 cut(s)	176, 520
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	2 cut(s)	222, 248
RsaNI	GTAC	2 cut(s)	221, 247
SacI	GAGCTC	1 cut(s)	206
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	588
SatI	GCNGC	4 cut(s)	15, 172, 175, 516
Sau96I	GGNCC	1 cut(s)	121
SchI	GAGTC	2 cut(s)	296, 437
SduI	GDGCHC	2 cut(s)	206, 334
SfaNI	GCATC	2 cut(s)	388, 597
SfcI	CTRYAG	2 cut(s)	172, 516
SinI	GGWCC	1 cut(s)	121
SphI	GCATGC	1 cut(s)	405
SsiI	CCGC	3 cut(s)	15, 137, 207
SspI	AATATT	1 cut(s)	619
SspMI	CTAG	1 cut(s)	593
SstI	GAGCTC	1 cut(s)	206
TaaI	ACNGT	3 cut(s)	251, 272, 350
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	87
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TscAI	CASTG	2 cut(s)	256, 355
TseFI	GTSAC	2 cut(s)	42, 251
TseI	GCWGC	3 cut(s)	171, 174, 515
Tsp45I	GTSAC	2 cut(s)	42, 251
TspDTI	ATGAA	1 cut(s)	106
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	2 cut(s)	256, 355
Van91I	CCANNNNNTGG	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	121
XceI	RCATGY	1 cut(s)	405
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	593
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.