Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001508

Physical Location & Seq

Genomic Coordinates Reverse (-)

17060616 .. 17063603

Gene Structure 2988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG178500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCGATTGATGCCATTGAAGCTCCCTCTCCTCCATCTCTATCACCTTCCCATTTCAGGTTTCATTCATCTCATGCTTCTATTTCTCGAATCCTTTTTTTTTTATTTGTAAACAAAAACAAAAAATGTTCTGGTTGCAGTCAACAGCGCCACTTCTATCTCGCCGTCGACAGGCTCCAGTTCAAGTTGGAGACATTTATGGACCTCTTGGGCGTGGCGGGAAGGCGCCCCTGTCTTCCAATGGTGGTCTGCTGCAGCTCACGTGACGAACTCGACGCCGTCAGCTCCGCCGTCGCAACCGTCCCCTATATCTCTCTGGCCCCTCTGTACACTGACCTAGCTGAAGCAGACCGTGCTGCAATATTAGAGTCCTTCAAGCAAGCAACCATCAGGTGGAACCCAGAAGTTGGTGCTCAATCAGCTGATGACAGTGAGCCTGTGAAAGAGGAACAAAAATCTCATATGATAGTTGCTACAGATGCATGCATTCCGCTTCTTGCTTCTGGGGAGTCACCTATTTCTGCTCGTGTTCTTATAAACTATGAGTTACCTGCAAAGAAGGAAATATATACAAGGCGTATGGCAACTTGTTTGGCTGCAGGTTCTTCCCTACTATGCTTTACTTCTTTGTTAGTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

Helicase_C

Protein Analysis

213

Amino Acids

23.3

Weight (kDa)

6.51

Isoelectric Point (pI)

61.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37020 AT4G37020
fragaria_vesca	FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950
malus_domestica	MD02G1301600.v1.1 MD02G1301800.v1.1 MD07G1022300.v1.1 MD17G1282900.v1.1
prunus_persica	Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1
pyrus_communis	pycom02g25340 pycom02g25350 pycom02g25400
rosa_chinensis	RchiOBHm_Chr2g0105351 RchiOBHm_Chr3g0472951
rosa_laevigata	RLG00000017419
rosa_multiflora	Rmu_co8381435.1_g000001 Rmu_sc0001407.1_g000022
rosa_roxburghii	Rroxscaffold_1G00022310 Rroxscaffold_2G00114060 Rroxscaffold_2G00126470 Rroxscaffold_2G00138270 Rroxscaffold_4G00312150 Rroxscaffold_4G00329030 Rroxscaffold_5G00344210 Rroxscaffold_5G00351740 Rroxscaffold_6G00388800 Rroxscaffold_6G00408610
rosa_rugosa	Rorug02G0127800 Rorug03G0292600
rosa_samantha	Rh1BG139100 Rh2AG178500 Rh2AG329700 Rh2BG186900 Rh2CG183000 Rh2DG184400 Rh3BG143700 Rh3BG208100 Rh3CG145000 Rh3DG145000 Rh3DG167900 Rh5DG241200 Rh5DG275600 Rh6DG097100 Rh6DG389000
rosa_wichuraiana	Rw2G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
Acc36I	ACCTGC	2 cut(s)	559, 590
AccB1I	GGYRCC	1 cut(s)	225
AccB7I	CCANNNNNTGG	2 cut(s)	393, 407
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	3 cut(s)	218, 288, 491
AcuI	CTGAAG	1 cut(s)	363
AcvI	CACGTG	1 cut(s)	263
AcyI	GRCGYC	2 cut(s)	226, 276
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	4 cut(s)	57, 171, 393, 407
AgsI	TTSAA	3 cut(s)	20, 184, 376
AluBI	AGCT	5 cut(s)	23, 258, 285, 341, 422
AluI	AGCT	5 cut(s)	23, 258, 285, 341, 422
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	318
ApeKI	GCWGC	4 cut(s)	252, 255, 356, 596
AspLEI	GCGC	2 cut(s)	150, 228
AspS9I	GGNCC	2 cut(s)	202, 319
AsuHPI	GGTGA	2 cut(s)	36, 504
AvaII	GGWCC	1 cut(s)	202
BanI	GGYRCC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	525
BbrPI	CACGTG	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	4 cut(s)	239, 267, 343, 583
BccI	CCATC	2 cut(s)	43, 395
BceAI	ACGGC	3 cut(s)	149, 263, 275
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	3 cut(s)	253, 474, 597
BfoI	RGCGCY	2 cut(s)	151, 229
BfuAI	ACCTGC	2 cut(s)	559, 590
BisI	GCNGC	4 cut(s)	253, 256, 357, 597
BlsI	GCNGC	4 cut(s)	254, 257, 358, 598
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	202, 319
BmiI	GGNNCC	4 cut(s)	176, 227, 321, 398
BmsI	GCATC	1 cut(s)	469
BpiI	GAAGAC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	263
BsaHI	GRCGYC	2 cut(s)	226, 276
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 171, 393, 407
Bse1I	ACTGG	1 cut(s)	178
BseLI	CCNNNNNNNGG	4 cut(s)	57, 171, 393, 407
BseNI	ACTGG	1 cut(s)	178
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	4 cut(s)	239, 267, 343, 583
BshFI	GGCC	1 cut(s)	320
BshNI	GGYRCC	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	415
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	4 cut(s)	57, 171, 393, 407
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	287
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp1407I	TGTACA	1 cut(s)	327
BspACI	CCGC	3 cut(s)	218, 288, 491
BspANI	GGCC	1 cut(s)	320
BspLI	GGNNCC	4 cut(s)	176, 227, 321, 398
BspMAI	CTGCAG	2 cut(s)	257, 601
BspMI	ACCTGC	2 cut(s)	559, 590
BspT107I	GGYRCC	1 cut(s)	225
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	178
BssNI	GRCGYC	2 cut(s)	226, 276
BssSI	CACGAG	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	525
Bst4CI	ACNGT	3 cut(s)	301, 353, 431
BstACI	GRCGYC	2 cut(s)	226, 276
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstAUI	TGTACA	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	381, 484
BstH2I	RGCGCY	2 cut(s)	151, 229
BstHHI	GCGC	2 cut(s)	150, 228
BstMAI	GTCTC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 353, 419, 479
BstNSI	RCATGY	1 cut(s)	486
BstSFI	CTRYAG	3 cut(s)	253, 474, 597
BstV1I	GCAGC	4 cut(s)	239, 267, 343, 583
BstV2I	GAAGAC	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	320
BtsIMutI	CAGTG	2 cut(s)	330, 436
BveI	ACCTGC	2 cut(s)	559, 590
Cac8I	GCNNGC	2 cut(s)	381, 484
CfoI	GCGC	2 cut(s)	150, 228
Cfr13I	GGNCC	2 cut(s)	202, 319
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	2 cut(s)	74, 483
CviJI	RGCY	9 cut(s)	23, 175, 258, 285, 320, 341, 422, 436, 596
CviKI_1	RGCY	9 cut(s)	23, 175, 258, 285, 320, 341, 422, 436, 596
CviQI	GTAC	1 cut(s)	328
DinI	GGCGCC	1 cut(s)	227
EciI	GGCGGA	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	363
Eco72I	CACGTG	1 cut(s)	263
EcoT22I	ATGCAT	2 cut(s)	484, 488
EgeI	GGCGCC	1 cut(s)	227
EheI	GGCGCC	1 cut(s)	227
FaeI	CATG	2 cut(s)	77, 486
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	2 cut(s)	73, 482
FauI	CCCGC	1 cut(s)	211
FauNDI	CATATG	1 cut(s)	462
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	4 cut(s)	253, 256, 357, 597
Fsp4HI	GCNGC	4 cut(s)	253, 256, 357, 597
FspBI	CTAG	1 cut(s)	338
GlaI	GCGC	2 cut(s)	149, 227
GluI	GCNGC	4 cut(s)	253, 256, 357, 597
GsuI	CTGGAG	1 cut(s)	161
HaeII	RGCGCY	2 cut(s)	151, 229
HaeIII	GGCC	1 cut(s)	320
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	2 cut(s)	150, 228
Hin1I	GRCGYC	2 cut(s)	226, 276
Hin1II	CATG	2 cut(s)	77, 486
Hin6I	GCGC	2 cut(s)	148, 226
HinP1I	GCGC	2 cut(s)	148, 226
HincII	GTYRAC	2 cut(s)	143, 169
HindII	GTYRAC	2 cut(s)	143, 169
HinfI	GANTC	3 cut(s)	90, 368, 509
HphI	GGTGA	2 cut(s)	36, 504
Hpy166II	GTNNAC	4 cut(s)	112, 143, 169, 330
Hpy188III	TCNNGA	1 cut(s)	87
Hpy8I	GTNNAC	4 cut(s)	112, 143, 169, 330
Hpy99I	CGWCG	3 cut(s)	170, 278, 296
HpyAV	CCTTC	4 cut(s)	57, 216, 382, 553
HpyCH4III	ACNGT	3 cut(s)	301, 353, 431
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	8 cut(s)	138, 255, 359, 482, 486, 554, 599, 638
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 353, 419, 479
HpySE526I	ACGT	1 cut(s)	262
Hsp92I	GRCGYC	2 cut(s)	226, 276
Hsp92II	CATG	2 cut(s)	77, 486
HspAI	GCGC	2 cut(s)	148, 226
KasI	GGCGCC	1 cut(s)	225
LmnI	GCTCC	3 cut(s)	28, 180, 290
Lsp1109I	GCAGC	4 cut(s)	239, 267, 343, 583
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	3 cut(s)	263, 510, 546
MboII	GAAGA	2 cut(s)	227, 597
MhlI	GDGCHC	1 cut(s)	415
Mly113I	GGCGCC	1 cut(s)	226
MlyI	GAGTC	2 cut(s)	377, 518
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	5 cut(s)	37, 42, 215, 333, 439
Mph1103I	ATGCAT	2 cut(s)	484, 488
MspA1I	CMGCKG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	486
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 353, 419, 479
NarI	GGCGCC	1 cut(s)	226
NdeI	CATATG	1 cut(s)	462
NlaIII	CATG	2 cut(s)	77, 486
NlaIV	GGNNCC	4 cut(s)	176, 227, 321, 398
NmuCI	GTSAC	2 cut(s)	263, 510
NsiI	ATGCAT	2 cut(s)	484, 488
NspI	RCATGY	1 cut(s)	486
PaeI	GCATGC	1 cut(s)	486
PctI	GAATGC	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	90
PflFI	GACNNNGTC	1 cut(s)	278
PflMI	CCANNNNNTGG	2 cut(s)	393, 407
PkrI	GCNGC	4 cut(s)	254, 257, 358, 598
PleI	GAGTC	2 cut(s)	376, 517
PluTI	GGCGCC	1 cut(s)	229
PmaCI	CACGTG	1 cut(s)	263
PmlI	CACGTG	1 cut(s)	263
PpsI	GAGTC	2 cut(s)	376, 517
Ppu21I	YACGTR	1 cut(s)	263
PsiI	TTATAA	1 cut(s)	536
PspCI	CACGTG	1 cut(s)	263
PspN4I	GGNNCC	4 cut(s)	176, 227, 321, 398
PspPI	GGNCC	2 cut(s)	202, 319
PstI	CTGCAG	2 cut(s)	257, 601
PsyI	GACNNNGTC	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SalI	GTCGAC	1 cut(s)	167
SatI	GCNGC	4 cut(s)	253, 256, 357, 597
Sau96I	GGNCC	2 cut(s)	202, 319
SchI	GAGTC	2 cut(s)	377, 518
SduI	GDGCHC	1 cut(s)	415
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	3 cut(s)	253, 474, 597
SfoI	GGCGCC	1 cut(s)	227
SinI	GGWCC	1 cut(s)	202
SphI	GCATGC	1 cut(s)	486
SsiI	CCGC	3 cut(s)	218, 288, 491
SspDI	GGCGCC	1 cut(s)	225
SspI	AATATT	1 cut(s)	363
SspMI	CTAG	1 cut(s)	338
TaaI	ACNGT	3 cut(s)	301, 353, 431
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	3 cut(s)	88, 168, 273
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	90
TscAI	CASTG	2 cut(s)	337, 436
TseFI	GTSAC	2 cut(s)	263, 510
TseI	GCWGC	4 cut(s)	252, 255, 356, 596
Tsp45I	GTSAC	2 cut(s)	263, 510
TspDTI	ATGAA	2 cut(s)	53, 57
TspRI	CASTG	2 cut(s)	337, 436
Tth111I	GACNNNGTC	1 cut(s)	278
Van91I	CCANNNNNTGG	2 cut(s)	393, 407
VpaK11BI	GGWCC	1 cut(s)	202
XceI	RCATGY	1 cut(s)	486
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	1 cut(s)	338
Zsp2I	ATGCAT	2 cut(s)	484, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.