Rh3BG208100

ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
18701603 .. 18704029
2427 bp
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UTR
Exon/CDS
Intron
Rh3BG208100.1

Sequence Viewer

Length: 252 bp
ATGGAGACATTTATGGACCTGTTGGGTGTGGCGGGAAGGCGTCCTTGTCTTCCAATGGTGGTCTGTTGCAGCTCACATGATGAGCTCGATGCCGTTAGCTCCACCATCGCAACCGTCCCCTATATCTCTTTAGCCCCTCTGGAGGAGGGAGATGCAATTGAAAATCAGAGAAAGAAAGATAAGAAGCTTGAAGTAGAGAAATCAAAGAAGATGGTAATAGCATTTTATTCATGCTGGAGTTGCATTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

9.24

Weight (kDa)

5.28

Isoelectric Point (pI)

59.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 2 cut(s) 161, 191
AluBI AGCT 4 cut(s) 72, 85, 99, 187
AluI AGCT 4 cut(s) 72, 85, 99, 187
Alw21I GWGCWC 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 16
AvaII GGWCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 81
BccI CCATC 2 cut(s) 113, 205
BceAI ACGGC 1 cut(s) 77
BfaI CTAG 1 cut(s) 250
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 16
BmsI GCATC 2 cut(s) 79, 142
BpiI GAAGAC 1 cut(s) 41
BpmI CTGGAG 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 142
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 87
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 101
BsmI GAATGC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 87
BspACI CCGC 1 cut(s) 32
BssNI GRCGYC 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 115
BstACI GRCGYC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 81
BstV2I GAAGAC 1 cut(s) 41
BtgZI GCGATG 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 16
CseI GACGC 1 cut(s) 29
CviAII CATG 2 cut(s) 77, 231
CviJI RGCY 5 cut(s) 72, 85, 99, 134, 187
CviKI_1 RGCY 5 cut(s) 72, 85, 99, 134, 187
Ecl136II GAGCTC 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 87
FaeI CATG 2 cut(s) 80, 234
FaiI YATR 4 cut(s) 14, 78, 123, 232
FalI AAGNNNNNCTT 2 cut(s) 28, 60
FaqI GGGAC 1 cut(s) 101
FatI CATG 2 cut(s) 76, 230
FauI CCCGC 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 70
FspBI CTAG 1 cut(s) 250
GluI GCNGC 1 cut(s) 70
GsuI CTGGAG 1 cut(s) 161
HgaI GACGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 40
Hin1II CATG 2 cut(s) 80, 234
HindIII AAGCTT 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 3 cut(s) 69, 155, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 40
Hsp92II CATG 2 cut(s) 80, 234
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 3 cut(s) 32, 125, 220
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 2 cut(s) 79, 142
MaeI CTAG 1 cut(s) 250
MboII GAAGA 2 cut(s) 41, 220
MfeI CAATTG 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 1 cut(s) 156
MnlI CCTC 3 cut(s) 136, 139, 147
MunI CAATTG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 240
NlaIII CATG 2 cut(s) 80, 234
PctI GAATGC 1 cut(s) 243
PkrI GCNGC 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 16
SacI GAGCTC 1 cut(s) 87
SatI GCNGC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 16
SduI GDGCHC 1 cut(s) 87
SetI ASST 5 cut(s) 21, 74, 87, 101, 189
SfaNI GCATC 2 cut(s) 79, 142
SgeI CNNG 9 cut(s) 31, 45, 57, 89, 98, 152, 200, 243, 247
SinI GGWCC 1 cut(s) 16
Sse9I AATT 1 cut(s) 156
SsiI CCGC 1 cut(s) 32
SspMI CTAG 1 cut(s) 250
SstI GAGCTC 1 cut(s) 87
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 87
TasI AATT 1 cut(s) 156
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 16
XspI CTAG 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.