Rh5DG275600

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001508
Physical Location & Seq
Reverse (-)
33739735 .. 33785406
45672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG275600.1

Sequence Viewer

Length: 858 bp
ATGCTCAAAGAACTTATACGCGAAAGGAGGGTACAACTTGATCAAAAAAGGGCTTCTCCACAACAAGACCTCATCACTTGCTTCCTTAGCATCAGGAAAAATGAAGGTAAAGAAGAATTAAGAGAGTTGGAGATGATGCACAATGTCATGGTAGTCATGGTTGCAGGGCATGACACTTCGGCTATTCTTATTACGTTCCTTTCGCGGATTCTAGCTAATGAACCAGCAGTGTATGCTGCCCTTCATCAAGAAAGGCTTCCTCCAGGCTCATTAATTAGGACTGCCCCTAATAGACCAGAGCCTTGGTCTTCTCCGCCCCATGCGTGCCAACACTGCAGAGGAATGGCTTCAACAAAGGATCAAAAAGTCCGTATTTATAACCTCAAAGGGTGTTCAGATGGGGTAAAATTCCTCTTTGTAACTGAAACCAAATGTGAAGGATCATTGGGTGTTAGTGCTACAAGACAGTACCATTTTAACACCCTAGCTGTTCCGCGCAAAGCAAAAGAAGCAATTGGAGGAATTACCCGTCTTACTCATGCTGATGAGGTCTTCGCCATTGAAGCTCCCTCTCCTCCATCTCTATCATCTTCCCATTTCAGTCAACAGCGCCACTTCTATCTCGCCGTTGACAGACTCCAGTTCAAGAAGGAGACATTTATGGACCTGTTGGGCGTGGCGGGAAGGCGTCCTTGTCTTCCAATGGTGGTCTGCTACAGCTCACGTGATGAGCTCGACGCCATCAGCTCCACCGTTGCAACCGTCCCCTATATCTCTTTAGCCCCTCTGGATGCACCACTTTGCATTTACTATGCACAACGTGAGGCATGCAAATTTGGAGCATGCAACTACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

285

Amino Acids

31.94

Weight (kDa)

8.77

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 84 6.9e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 378
AccII CGCG 3 cut(s) 21, 205, 496
AciI CCGC 4 cut(s) 205, 314, 494, 680
AclWI GGATC 2 cut(s) 366, 448
AcsI RAATTY 2 cut(s) 407, 833
AcvI CACGTG 1 cut(s) 725
AcyI GRCGYC 2 cut(s) 688, 738
AdeI CACNNNGTG 1 cut(s) 821
AfaI GTAC 2 cut(s) 33, 470
AgsI TTSAA 3 cut(s) 351, 563, 646
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 6 cut(s) 215, 488, 566, 720, 733, 747
AluI AGCT 6 cut(s) 215, 488, 566, 720, 733, 747
Alw21I GWGCWC 1 cut(s) 735
Alw26I GTCTC 1 cut(s) 647
AlwI GGATC 2 cut(s) 366, 448
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 2 cut(s) 407, 833
AseI ATTAAT 1 cut(s) 272
Asp700I GAANNNNTTC 2 cut(s) 255, 346
AspLEI GCGC 2 cut(s) 498, 612
AspS9I GGNCC 1 cut(s) 664
AvaII GGWCC 1 cut(s) 664
BanII GRGCYC 1 cut(s) 735
BbrPI CACGTG 1 cut(s) 725
BbsI GAAGAC 3 cut(s) 300, 544, 689
Bbv12I GWGCWC 1 cut(s) 735
BbvI GCAGC 1 cut(s) 223
BccI CCATC 3 cut(s) 392, 586, 749
BceAI ACGGC 1 cut(s) 611
BciT130I CCWGG 1 cut(s) 264
BclI TGATCA 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 647
BfaI CTAG 2 cut(s) 212, 485
BfmI CTRYAG 2 cut(s) 334, 715
BfoI RGCGCY 1 cut(s) 613
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 1 cut(s) 664
BmgT120I GGNCC 1 cut(s) 664
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 3 cut(s) 99, 126, 781
BpiI GAAGAC 3 cut(s) 300, 544, 689
BpmI CTGGAG 2 cut(s) 246, 623
Bpu10I CCTNAGC 1 cut(s) 86
BsaAI YACGTR 1 cut(s) 725
BsaHI GRCGYC 2 cut(s) 688, 738
BsaJI CCNNGG 1 cut(s) 302
Bse1I ACTGG 2 cut(s) 640, 853
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 796
BseNI ACTGG 2 cut(s) 640, 853
BseRI GAGGAG 1 cut(s) 564
BseXI GCAGC 1 cut(s) 223
Bsh1236I CGCG 3 cut(s) 21, 205, 496
BsiHKAI GWGCWC 1 cut(s) 735
BslFI GGGAC 1 cut(s) 749
BsmAI GTCTC 1 cut(s) 647
BsmFI GGGAC 1 cut(s) 749
Bsp1286I GDGCHC 1 cut(s) 735
Bsp143I GATC 3 cut(s) 40, 358, 440
BspACI CCGC 4 cut(s) 205, 314, 494, 680
BspFNI CGCG 3 cut(s) 21, 205, 496
BspMAI CTGCAG 1 cut(s) 338
BspPI GGATC 2 cut(s) 366, 448
BsrI ACTGG 2 cut(s) 640, 853
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 3 cut(s) 40, 358, 440
BssNI GRCGYC 2 cut(s) 688, 738
BssT1I CCWWGG 1 cut(s) 302
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 3 cut(s) 468, 754, 763
BstACI GRCGYC 2 cut(s) 688, 738
BstAPI GCANNNNNTGC 1 cut(s) 233
BstBAI YACGTR 1 cut(s) 725
BstC8I GCNNGC 3 cut(s) 325, 829, 844
BstDEI CTNAG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 796
BstFNI CGCG 3 cut(s) 21, 205, 496
BstH2I RGCGCY 1 cut(s) 613
BstHHI GCGC 2 cut(s) 498, 612
BstKTI GATC 3 cut(s) 43, 361, 443
BstMAI GTCTC 1 cut(s) 647
BstMBI GATC 3 cut(s) 40, 358, 440
BstMWI GCNNNNNNNGC 5 cut(s) 87, 233, 333, 509, 563
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 2 cut(s) 831, 846
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 2 cut(s) 334, 715
BstUI CGCG 3 cut(s) 21, 205, 496
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 3 cut(s) 300, 544, 689
BstXI CCANNNNNNTGG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 796
BtsI GCAGTG 2 cut(s) 234, 331
BtsIMutI CAGTG 2 cut(s) 234, 331
Cac8I GCNNGC 3 cut(s) 325, 829, 844
CfoI GCGC 2 cut(s) 498, 612
Cfr13I GGNCC 1 cut(s) 664
CseI GACGC 2 cut(s) 677, 746
Csp6I GTAC 2 cut(s) 32, 469
CviAII CATG 7 cut(s) 148, 157, 170, 320, 539, 828, 843
CviQI GTAC 2 cut(s) 32, 469
DdeI CTNAG 1 cut(s) 86
DpnI GATC 3 cut(s) 42, 360, 442
DpnII GATC 3 cut(s) 40, 358, 440
DraIII CACNNNGTG 1 cut(s) 821
EciI GGCGGA 1 cut(s) 303
Ecl136II GAGCTC 1 cut(s) 733
Eco130I CCWWGG 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 735
Eco47I GGWCC 1 cut(s) 664
Eco53kI GAGCTC 1 cut(s) 733
Eco72I CACGTG 1 cut(s) 725
EcoICRI GAGCTC 1 cut(s) 733
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 302
EcoT38I GRGCYC 1 cut(s) 735
ErhI CCWWGG 1 cut(s) 302
FaeI CATG 7 cut(s) 151, 160, 173, 323, 542, 831, 846
FalI AAGNNNNNCTT 4 cut(s) 240, 272, 676, 708
FaqI GGGAC 1 cut(s) 749
FatI CATG 7 cut(s) 147, 156, 169, 319, 538, 827, 842
FauI CCCGC 1 cut(s) 673
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 1 cut(s) 803
FriOI GRGCYC 1 cut(s) 735
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 2 cut(s) 212, 485
GlaI GCGC 2 cut(s) 497, 611
GluI GCNGC 1 cut(s) 237
GsuI CTGGAG 2 cut(s) 246, 623
HaeII RGCGCY 1 cut(s) 613
HgaI GACGC 2 cut(s) 677, 746
HhaI GCGC 2 cut(s) 498, 612
Hin1I GRCGYC 2 cut(s) 688, 738
Hin1II CATG 7 cut(s) 151, 160, 173, 323, 542, 831, 846
Hin6I GCGC 2 cut(s) 496, 610
HinP1I GCGC 2 cut(s) 496, 610
HincII GTYRAC 2 cut(s) 605, 631
HindII GTYRAC 2 cut(s) 605, 631
HinfI GANTC 2 cut(s) 208, 636
Hpy166II GTNNAC 2 cut(s) 605, 631
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 4 cut(s) 94, 248, 646, 788
Hpy8I GTNNAC 2 cut(s) 605, 631
Hpy99I CGWCG 1 cut(s) 740
HpyAV CCTTC 5 cut(s) 98, 251, 431, 643, 678
HpyCH4III ACNGT 3 cut(s) 468, 754, 763
HpyCH4IV ACGT 3 cut(s) 194, 724, 820
HpyCH4V TGCA 9 cut(s) 139, 164, 336, 758, 794, 804, 815, 831, 846
HpyF10VI GCNNNNNNNGC 5 cut(s) 87, 233, 333, 509, 563
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 3 cut(s) 194, 724, 820
Hsp92I GRCGYC 2 cut(s) 688, 738
Hsp92II CATG 7 cut(s) 151, 160, 173, 323, 542, 831, 846
HspAI GCGC 2 cut(s) 496, 610
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 3 cut(s) 40, 358, 440
LmnI GCTCC 3 cut(s) 571, 752, 839
LpnPI CCDG 9 cut(s) 79, 150, 237, 249, 276, 309, 653, 680, 773
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 3 cut(s) 99, 126, 781
MaeI CTAG 2 cut(s) 212, 485
MaeII ACGT 3 cut(s) 194, 724, 820
MaeIII GTNAC 1 cut(s) 418
MalI GATC 3 cut(s) 42, 360, 442
MboI GATC 3 cut(s) 40, 358, 440
MboII GAAGA 5 cut(s) 125, 300, 544, 582, 689
MfeI CAATTG 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 735
MluCI AATT 6 cut(s) 116, 273, 407, 513, 522, 833
MlyI GAGTC 1 cut(s) 630
MmeI TCCRAC 1 cut(s) 108
MroXI GAANNNNTTC 2 cut(s) 255, 346
MseI TTAA 3 cut(s) 119, 272, 477
MslI CAYNNNNRTG 1 cut(s) 543
MspR9I CCNGG 1 cut(s) 264
MunI CAATTG 1 cut(s) 513
MvaI CCWGG 1 cut(s) 264
MvnI CGCG 3 cut(s) 21, 205, 496
MwoI GCNNNNNNNGC 5 cut(s) 87, 233, 333, 509, 563
NdeII GATC 3 cut(s) 40, 358, 440
NlaIII CATG 7 cut(s) 151, 160, 173, 323, 542, 831, 846
NspI RCATGY 2 cut(s) 831, 846
PaeI GCATGC 2 cut(s) 831, 846
PdmI GAANNNNTTC 2 cut(s) 255, 346
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 1 cut(s) 238
PleI GAGTC 1 cut(s) 630
PmaCI CACGTG 1 cut(s) 725
PmlI CACGTG 1 cut(s) 725
PpsI GAGTC 1 cut(s) 630
Ppu21I YACGTR 1 cut(s) 725
PshBI ATTAAT 1 cut(s) 272
PsiI TTATAA 1 cut(s) 378
Psp124BI GAGCTC 1 cut(s) 735
Psp6I CCWGG 1 cut(s) 262
PspCI CACGTG 1 cut(s) 725
PspGI CCWGG 1 cut(s) 262
PspPI GGNCC 1 cut(s) 664
PstI CTGCAG 1 cut(s) 338
RsaI GTAC 2 cut(s) 33, 470
RsaNI GTAC 2 cut(s) 32, 469
RseI CAYNNNNRTG 1 cut(s) 543
SacI GAGCTC 1 cut(s) 735
SaqAI TTAA 3 cut(s) 119, 272, 477
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 3 cut(s) 40, 358, 440
Sau96I GGNCC 1 cut(s) 664
SchI GAGTC 1 cut(s) 630
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 735
SfaNI GCATC 3 cut(s) 99, 126, 781
SfcI CTRYAG 2 cut(s) 334, 715
SinI GGWCC 1 cut(s) 664
SmiMI CAYNNNNRTG 1 cut(s) 543
SphI GCATGC 2 cut(s) 831, 846
Sse9I AATT 6 cut(s) 116, 273, 407, 513, 522, 833
SsiI CCGC 4 cut(s) 205, 314, 494, 680
SspMI CTAG 2 cut(s) 212, 485
SstI GAGCTC 1 cut(s) 735
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 3 cut(s) 468, 754, 763
TaiI ACGT 3 cut(s) 197, 727, 823
TaqI TCGA 1 cut(s) 735
TasI AATT 6 cut(s) 116, 273, 407, 513, 522, 833
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 3 cut(s) 119, 272, 477
Tru9I TTAA 3 cut(s) 119, 272, 477
TscAI CASTG 2 cut(s) 234, 338
TseI GCWGC 1 cut(s) 236
TspDTI ATGAA 3 cut(s) 117, 233, 234
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 2 cut(s) 234, 338
VpaK11BI GGWCC 1 cut(s) 664
VspI ATTAAT 1 cut(s) 272
XapI RAATTY 2 cut(s) 407, 833
XceI RCATGY 2 cut(s) 831, 846
XmnI GAANNNNTTC 2 cut(s) 255, 346
XspI CTAG 2 cut(s) 212, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.