Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001508

Physical Location & Seq

Genomic Coordinates Forward (+)

58174246 .. 58184731

Gene Structure 10486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG389000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGACCTGTTGGGCGTAGCGGGAAGGCGTCCCTGTCTTCCAATGGTGGTCTGCTGCAGCTCACGTGACGAGCTCGACGCCGTCGACTCTGCCGTCGCAACCGCCCCCTATATCTCTTTATCCCCTCTGATTTGGATAAATATGGGTCCCCTACTATATCACTTTGCAGATGTGTATGGACAAGGAGATGATATGTCTATTGAACTGAGTTTGGAGGATGTGAAGAGGGTTGCTTTACATTATGGATTTCATATAGAGAAGGAAAAGACCATTGAGACAACCTACACTACAAATCCCAGATCAATGATGCAATTCCCATCTTTGGAGAATGTCACAAGGCATACTGGAAACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00340 map00340

Pfam Domains

Protein Families

N2227

Protein Analysis

118

Amino Acids

13.18

Weight (kDa)

5.0

Isoelectric Point (pI)

52.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CARME	PF07942	44 - 104	3e-20	Carnosine N-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37020 AT4G37020
fragaria_vesca	FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950
malus_domestica	MD02G1301600.v1.1 MD02G1301800.v1.1 MD07G1022300.v1.1 MD17G1282900.v1.1
prunus_persica	Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1
pyrus_communis	pycom02g25340 pycom02g25350 pycom02g25400
rosa_chinensis	RchiOBHm_Chr2g0105351 RchiOBHm_Chr3g0472951
rosa_laevigata	RLG00000017419
rosa_multiflora	Rmu_co8381435.1_g000001 Rmu_sc0001407.1_g000022
rosa_roxburghii	Rroxscaffold_1G00022310 Rroxscaffold_2G00114060 Rroxscaffold_2G00126470 Rroxscaffold_2G00138270 Rroxscaffold_4G00312150 Rroxscaffold_4G00329030 Rroxscaffold_5G00344210 Rroxscaffold_5G00351740 Rroxscaffold_6G00388800 Rroxscaffold_6G00408610
rosa_rugosa	Rorug02G0127800 Rorug03G0292600
rosa_samantha	Rh1BG139100 Rh2AG178500 Rh2AG329700 Rh2BG186900 Rh2CG183000 Rh2DG184400 Rh3BG143700 Rh3BG208100 Rh3CG145000 Rh3DG145000 Rh3DG167900 Rh5DG241200 Rh5DG275600 Rh6DG097100 Rh6DG389000
rosa_wichuraiana	Rw2G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	2 cut(s)	20, 102
AcvI	CACGTG	1 cut(s)	65
AcyI	GRCGYC	2 cut(s)	28, 78
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	203
AluBI	AGCT	2 cut(s)	60, 73
AluI	AGCT	2 cut(s)	60, 73
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	269
ApeKI	GCWGC	2 cut(s)	54, 57
AspS9I	GGNCC	2 cut(s)	4, 146
AvaII	GGWCC	2 cut(s)	4, 146
BanII	GRGCYC	1 cut(s)	75
BbrPI	CACGTG	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	41, 69
BccI	CCATC	1 cut(s)	325
BceAI	ACGGC	2 cut(s)	65, 77
BcoDI	GTCTC	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	55
BisI	GCNGC	2 cut(s)	55, 58
BlsI	GCNGC	2 cut(s)	56, 59
Bme18I	GGWCC	2 cut(s)	4, 146
BmgT120I	GGNCC	2 cut(s)	4, 146
BmiI	GGNNCC	2 cut(s)	147, 148
BmsI	GCATC	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	65
BsaHI	GRCGYC	2 cut(s)	28, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	2 cut(s)	41, 69
BsiHKAI	GWGCWC	1 cut(s)	75
BslFI	GGGAC	2 cut(s)	15, 132
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	2 cut(s)	15, 132
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	299
BspACI	CCGC	2 cut(s)	20, 102
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	147, 148
BspMAI	CTGCAG	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	349
BssMI	GATC	1 cut(s)	299
BssNI	GRCGYC	2 cut(s)	28, 78
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	2 cut(s)	28, 78
BstBAI	YACGTR	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	1 cut(s)	302
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	299
BstSFI	CTRYAG	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	41, 69
BstV2I	GAAGAC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	4, 146
CseI	GACGC	2 cut(s)	17, 86
CviJI	RGCY	2 cut(s)	60, 73
CviKI_1	RGCY	2 cut(s)	60, 73
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	1 cut(s)	301
DpnII	GATC	1 cut(s)	299
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	75
Eco47I	GGWCC	2 cut(s)	4, 146
Eco53kI	GAGCTC	1 cut(s)	73
Eco72I	CACGTG	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	75
FaqI	GGGAC	2 cut(s)	15, 132
FauI	CCCGC	1 cut(s)	13
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	55, 58
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	2 cut(s)	55, 58
GluI	GCNGC	2 cut(s)	55, 58
HgaI	GACGC	2 cut(s)	17, 86
Hin1I	GRCGYC	2 cut(s)	28, 78
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	129
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	3 cut(s)	80, 86, 98
HpyAV	CCTTC	2 cut(s)	18, 253
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	3 cut(s)	57, 167, 310
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	1 cut(s)	64
Hsp92I	GRCGYC	2 cut(s)	28, 78
KflI	GGGWCCC	1 cut(s)	146
Kzo9I	GATC	1 cut(s)	299
LpnPI	CCDG	4 cut(s)	20, 46, 310, 330
Lsp1109I	GCAGC	2 cut(s)	41, 69
LweI	GCATC	1 cut(s)	297
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	2 cut(s)	65, 331
MalI	GATC	1 cut(s)	301
MboI	GATC	1 cut(s)	299
MboII	GAAGA	2 cut(s)	29, 235
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	1 cut(s)	311
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	3 cut(s)	135, 208, 219
NdeII	GATC	1 cut(s)	299
NlaIV	GGNNCC	2 cut(s)	147, 148
NmuCI	GTSAC	2 cut(s)	65, 331
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 90
PflFI	GACNNNGTC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	56, 59
PleI	GAGTC	1 cut(s)	80
PmaCI	CACGTG	1 cut(s)	65
PmlI	CACGTG	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	65
PpuMI	RGGWCCY	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	146
PspCI	CACGTG	1 cut(s)	65
PspN4I	GGNNCC	2 cut(s)	147, 148
PspPI	GGNCC	2 cut(s)	4, 146
PspPPI	RGGWCCY	1 cut(s)	146
PstI	CTGCAG	1 cut(s)	59
PsyI	GACNNNGTC	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	75
SalI	GTCGAC	1 cut(s)	83
SatI	GCNGC	2 cut(s)	55, 58
Sau3AI	GATC	1 cut(s)	299
Sau96I	GGNCC	2 cut(s)	4, 146
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	5 cut(s)	9, 62, 67, 75, 284
SfaNI	GCATC	1 cut(s)	297
SfcI	CTRYAG	1 cut(s)	55
SinI	GGWCC	2 cut(s)	4, 146
Sse9I	AATT	1 cut(s)	311
SsiI	CCGC	2 cut(s)	20, 102
SstI	GAGCTC	1 cut(s)	75
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	2 cut(s)	75, 84
TasI	AATT	1 cut(s)	311
TseFI	GTSAC	2 cut(s)	65, 331
TseI	GCWGC	2 cut(s)	54, 57
Tsp45I	GTSAC	2 cut(s)	65, 331
TspDTI	ATGAA	1 cut(s)	239
Tth111I	GACNNNGTC	1 cut(s)	80
VpaK11BI	GGWCC	2 cut(s)	4, 146
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.