MD17G1282900.v1.1

helicase activity

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
34206216 .. 34206734
519 bp
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UTR
Exon/CDS
Intron
MD17G1282900.v1.1.491

Sequence Viewer

Length: 240 bp
ATGAGATGGAACCCAGAAGTGAGTGCTCAATCAGCAGTTGATAATGAGTCTGTGAAAGATGAACAAAAATCTCATATGATAGTTGCAACAGATGCATGCCTTCCGCTGCTTCCTTCTGGGGAGTCACCTATAGCTGCCCGTGTTCTTATAAATTATGAGTTACCGACAAAGAAGGTTCGTCCTACCAAGTTGTACTACTTTGTTAGTTGCATATTAATGGGGTATGCTCTCTTGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

8.87

Weight (kDa)

7.77

Isoelectric Point (pI)

63.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 149
AciI CCGC 1 cut(s) 104
AfaI GTAC 1 cut(s) 194
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw21I GWGCWC 1 cut(s) 28
ApeKI GCWGC 2 cut(s) 106, 134
AseI ATTAAT 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 2 cut(s) 93, 121
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 2 cut(s) 107, 135
BlsI GCNGC 2 cut(s) 108, 136
BmiI GGNNCC 1 cut(s) 11
BmsI GCATC 1 cut(s) 82
BseXI GCAGC 2 cut(s) 93, 121
BsiHKAI GWGCWC 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 28
BspACI CCGC 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 11
BstAPI GCANNNNNTGC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 97
BstMWI GCNNNNNNNGC 2 cut(s) 32, 92
BstNSI RCATGY 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 93, 121
Cac8I GCNNGC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 193
CviAII CATG 1 cut(s) 96
CviJI RGCY 1 cut(s) 134
CviKI_1 RGCY 1 cut(s) 134
CviQI GTAC 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 97
FaeI CATG 1 cut(s) 99
FaiI YATR 8 cut(s) 75, 77, 97, 131, 149, 156, 212, 225
FatI CATG 1 cut(s) 95
FauNDI CATATG 1 cut(s) 75
Fnu4HI GCNGC 2 cut(s) 107, 135
Fsp4HI GCNGC 2 cut(s) 107, 135
GluI GCNGC 2 cut(s) 107, 135
Hin1II CATG 1 cut(s) 99
HinfI GANTC 2 cut(s) 47, 122
HphI GGTGA 1 cut(s) 117
HpyAV CCTTC 3 cut(s) 110, 123, 166
HpyCH4V TGCA 3 cut(s) 86, 95, 210
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 92
Hsp92II CATG 1 cut(s) 99
LpnPI CCDG 2 cut(s) 27, 102
Lsp1109I GCAGC 2 cut(s) 93, 121
LweI GCATC 1 cut(s) 82
MaeIII GTNAC 2 cut(s) 123, 159
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 1 cut(s) 151
MlyI GAGTC 2 cut(s) 56, 131
Mph1103I ATGCAT 1 cut(s) 97
MseI TTAA 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 106
MwoI GCNNNNNNNGC 2 cut(s) 32, 92
NdeI CATATG 1 cut(s) 75
NlaIII CATG 1 cut(s) 99
NlaIV GGNNCC 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 123
NsiI ATGCAT 1 cut(s) 97
NspI RCATGY 1 cut(s) 99
PaeI GCATGC 1 cut(s) 99
PkrI GCNGC 2 cut(s) 108, 136
PleI GAGTC 2 cut(s) 55, 130
PpsI GAGTC 2 cut(s) 55, 130
PshBI ATTAAT 1 cut(s) 215
PsiI TTATAA 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 11
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 2 cut(s) 107, 135
SchI GAGTC 2 cut(s) 56, 131
SduI GDGCHC 1 cut(s) 28
SetI ASST 3 cut(s) 130, 136, 177
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 129
SgeI CNNG 6 cut(s) 26, 108, 129, 150, 152, 199
SmiMI CAYNNNNRTG 1 cut(s) 215
SphI GCATGC 1 cut(s) 99
Sse9I AATT 1 cut(s) 151
SsiI CCGC 1 cut(s) 104
TasI AATT 1 cut(s) 151
TatI WGTACW 1 cut(s) 192
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TseFI GTSAC 1 cut(s) 123
TseI GCWGC 2 cut(s) 106, 134
Tsp45I GTSAC 1 cut(s) 123
TspDTI ATGAA 1 cut(s) 75
VspI ATTAAT 1 cut(s) 215
XceI RCATGY 1 cut(s) 99
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.