Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001508

Physical Location & Seq

Genomic Coordinates Reverse (-)

16684726 .. 16687667

Gene Structure 2942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG186900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCCATTGAAGCTCCCTCTCCTCCATCTCTATCACCTTCCCATTTCAGGTTTCATTCATCTCATGCTTCTATTTCTAGAATCTTTTTTTTTTTTTTTAATTTGTAAACAAAAAAAAAAAAAATGTTCTGGTTGCAGTCAACAGCGCCACTTCTATCTCGCCGTCGACAGGCTCCAGTTCAAGTTGGAGACATTTATGGACCTCTTGGGCGTGGCGGGAAGGCGCCCCTGTCTTCCAATGGTGGTCTGCTGCAGCTCACGTGACGAACTCGACGCCGTCAGCTCCGCCGTCACAACCGTCCCCTATATCTCTCTCGCCCCTCTGTACACTGACCTAGCTGAAGCAGACCGTGCTGCAATATTAGAGTCCTTCAAGCAAGCAACCATCAGGTGGAACCCAGACATTGGTGCTCAATCAGCTGATGACAGTGAGCCTGTGAAAGAGGAACAAAAATCTCATATGATAGTTGCTACAGATGCATGCATCCCGCTTCTTGCTTCTGGGGAGTCACCTATTTCTGCTCGTGTTCTTATAAACTATGAGTTACCTGCAAAGAAGGTCCGGTTCTATTTCTTCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

Helicase_C

Protein Analysis

193

Amino Acids

21.76

Weight (kDa)

7.59

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37020 AT4G37020
fragaria_vesca	FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950
malus_domestica	MD02G1301600.v1.1 MD02G1301800.v1.1 MD07G1022300.v1.1 MD17G1282900.v1.1
prunus_persica	Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1
pyrus_communis	pycom02g25340 pycom02g25350 pycom02g25400
rosa_chinensis	RchiOBHm_Chr2g0105351 RchiOBHm_Chr3g0472951
rosa_laevigata	RLG00000017419
rosa_multiflora	Rmu_co8381435.1_g000001 Rmu_sc0001407.1_g000022
rosa_roxburghii	Rroxscaffold_1G00022310 Rroxscaffold_2G00114060 Rroxscaffold_2G00126470 Rroxscaffold_2G00138270 Rroxscaffold_4G00312150 Rroxscaffold_4G00329030 Rroxscaffold_5G00344210 Rroxscaffold_5G00351740 Rroxscaffold_6G00388800 Rroxscaffold_6G00408610
rosa_rugosa	Rorug02G0127800 Rorug03G0292600
rosa_samantha	Rh1BG139100 Rh2AG178500 Rh2AG329700 Rh2BG186900 Rh2CG183000 Rh2DG184400 Rh3BG143700 Rh3BG208100 Rh3CG145000 Rh3DG145000 Rh3DG167900 Rh5DG241200 Rh5DG275600 Rh6DG097100 Rh6DG389000
rosa_wichuraiana	Rw2G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	533
Acc36I	ACCTGC	1 cut(s)	556
AccB1I	GGYRCC	1 cut(s)	222
AccB7I	CCANNNNNTGG	2 cut(s)	390, 404
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	3 cut(s)	215, 285, 488
AcuI	CTGAAG	1 cut(s)	360
AcvI	CACGTG	1 cut(s)	260
AcyI	GRCGYC	2 cut(s)	223, 273
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	4 cut(s)	47, 168, 390, 404
AgsI	TTSAA	3 cut(s)	10, 181, 373
AluBI	AGCT	5 cut(s)	13, 255, 282, 338, 419
AluI	AGCT	5 cut(s)	13, 255, 282, 338, 419
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	1 cut(s)	182
ApeKI	GCWGC	3 cut(s)	249, 252, 353
AspLEI	GCGC	2 cut(s)	147, 225
AspS9I	GGNCC	2 cut(s)	199, 559
AsuHPI	GGTGA	2 cut(s)	26, 501
AvaII	GGWCC	2 cut(s)	199, 559
BanI	GGYRCC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	522
BbrPI	CACGTG	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	3 cut(s)	236, 264, 340
BccI	CCATC	2 cut(s)	33, 392
BceAI	ACGGC	3 cut(s)	146, 260, 272
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	77, 335
BfmI	CTRYAG	2 cut(s)	250, 471
BfoI	RGCGCY	2 cut(s)	148, 226
BfuAI	ACCTGC	1 cut(s)	556
BisI	GCNGC	3 cut(s)	250, 253, 354
BlsI	GCNGC	3 cut(s)	251, 254, 355
Bme18I	GGWCC	2 cut(s)	199, 559
BmgT120I	GGNCC	2 cut(s)	199, 559
BmiI	GGNNCC	3 cut(s)	173, 224, 395
BmsI	GCATC	2 cut(s)	466, 492
BpiI	GAAGAC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	158
BsaAI	YACGTR	1 cut(s)	260
BsaHI	GRCGYC	2 cut(s)	223, 273
BsaWI	WCCGGW	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 168, 390, 404
Bse1I	ACTGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	483
BseLI	CCNNNNNNNGG	4 cut(s)	47, 168, 390, 404
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	11
BseXI	GCAGC	3 cut(s)	236, 264, 340
BshNI	GGYRCC	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	412
BsiSI	CCGG	1 cut(s)	562
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	4 cut(s)	47, 168, 390, 404
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp1407I	TGTACA	1 cut(s)	324
BspACI	CCGC	3 cut(s)	215, 285, 488
BspLI	GGNNCC	3 cut(s)	173, 224, 395
BspMAI	CTGCAG	1 cut(s)	254
BspMI	ACCTGC	1 cut(s)	556
BspT107I	GGYRCC	1 cut(s)	222
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	175
BssNI	GRCGYC	2 cut(s)	223, 273
BssSI	CACGAG	1 cut(s)	522
Bst2BI	CACGAG	1 cut(s)	522
Bst4CI	ACNGT	3 cut(s)	298, 350, 428
BstACI	GRCGYC	2 cut(s)	223, 273
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	324
BstBAI	YACGTR	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	378, 481
BstDEI	CTNAG	1 cut(s)	579
BstF5I	GGATG	1 cut(s)	483
BstH2I	RGCGCY	2 cut(s)	148, 226
BstHHI	GCGC	2 cut(s)	147, 225
BstMAI	GTCTC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 350, 416, 476
BstNSI	RCATGY	1 cut(s)	483
BstSFI	CTRYAG	2 cut(s)	250, 471
BstV1I	GCAGC	3 cut(s)	236, 264, 340
BstV2I	GAAGAC	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	483
BtsIMutI	CAGTG	2 cut(s)	327, 433
BveI	ACCTGC	1 cut(s)	556
Cac8I	GCNNGC	2 cut(s)	378, 481
CfoI	GCGC	2 cut(s)	147, 225
Cfr13I	GGNCC	2 cut(s)	199, 559
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	2 cut(s)	64, 480
CviJI	RGCY	7 cut(s)	13, 172, 255, 282, 338, 419, 433
CviKI_1	RGCY	7 cut(s)	13, 172, 255, 282, 338, 419, 433
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	1 cut(s)	579
DinI	GGCGCC	1 cut(s)	224
EciI	GGCGGA	1 cut(s)	274
Eco47I	GGWCC	2 cut(s)	199, 559
Eco57I	CTGAAG	1 cut(s)	360
Eco72I	CACGTG	1 cut(s)	260
EcoT22I	ATGCAT	2 cut(s)	481, 485
EgeI	GGCGCC	1 cut(s)	224
EheI	GGCGCC	1 cut(s)	224
FaeI	CATG	2 cut(s)	67, 483
FaiI	YATR	8 cut(s)	65, 197, 306, 459, 461, 481, 533, 540
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	2 cut(s)	63, 479
FauI	CCCGC	2 cut(s)	208, 495
FauNDI	CATATG	1 cut(s)	459
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	3 cut(s)	250, 253, 354
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	3 cut(s)	250, 253, 354
FspBI	CTAG	2 cut(s)	77, 335
GlaI	GCGC	2 cut(s)	146, 224
GluI	GCNGC	3 cut(s)	250, 253, 354
GsuI	CTGGAG	1 cut(s)	158
HaeII	RGCGCY	2 cut(s)	148, 226
HapII	CCGG	1 cut(s)	562
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	2 cut(s)	147, 225
Hin1I	GRCGYC	2 cut(s)	223, 273
Hin1II	CATG	2 cut(s)	67, 483
Hin6I	GCGC	2 cut(s)	145, 223
HinP1I	GCGC	2 cut(s)	145, 223
HincII	GTYRAC	2 cut(s)	140, 166
HindII	GTYRAC	2 cut(s)	140, 166
HinfI	GANTC	3 cut(s)	80, 365, 506
HpaII	CCGG	1 cut(s)	562
HphI	GGTGA	2 cut(s)	26, 501
Hpy166II	GTNNAC	4 cut(s)	107, 140, 166, 327
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	4 cut(s)	107, 140, 166, 327
Hpy99I	CGWCG	2 cut(s)	167, 275
HpyAV	CCTTC	4 cut(s)	47, 213, 379, 550
HpyCH4III	ACNGT	3 cut(s)	298, 350, 428
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	6 cut(s)	135, 252, 356, 479, 483, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 350, 416, 476
HpyF3I	CTNAG	1 cut(s)	579
HpySE526I	ACGT	1 cut(s)	259
Hsp92I	GRCGYC	2 cut(s)	223, 273
Hsp92II	CATG	2 cut(s)	67, 483
HspAI	GCGC	2 cut(s)	145, 223
KasI	GGCGCC	1 cut(s)	222
LmnI	GCTCC	3 cut(s)	18, 177, 287
Lsp1109I	GCAGC	3 cut(s)	236, 264, 340
LweI	GCATC	2 cut(s)	466, 492
MaeI	CTAG	2 cut(s)	77, 335
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	4 cut(s)	260, 289, 507, 543
MboII	GAAGA	2 cut(s)	224, 565
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	1 cut(s)	99
Mly113I	GGCGCC	1 cut(s)	223
MlyI	GAGTC	2 cut(s)	374, 515
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	5 cut(s)	27, 32, 212, 330, 436
Mph1103I	ATGCAT	2 cut(s)	481, 485
MseI	TTAA	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	1 cut(s)	562
MwoI	GCNNNNNNNGC	4 cut(s)	10, 350, 416, 476
NarI	GGCGCC	1 cut(s)	223
NdeI	CATATG	1 cut(s)	459
NlaIII	CATG	2 cut(s)	67, 483
NlaIV	GGNNCC	3 cut(s)	173, 224, 395
NmuCI	GTSAC	3 cut(s)	260, 289, 507
NsiI	ATGCAT	2 cut(s)	481, 485
NspI	RCATGY	1 cut(s)	483
PaeI	GCATGC	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	80
PflFI	GACNNNGTC	1 cut(s)	275
PflMI	CCANNNNNTGG	2 cut(s)	390, 404
PkrI	GCNGC	3 cut(s)	251, 254, 355
PleI	GAGTC	2 cut(s)	373, 514
PluTI	GGCGCC	1 cut(s)	226
PmaCI	CACGTG	1 cut(s)	260
PmlI	CACGTG	1 cut(s)	260
PpsI	GAGTC	2 cut(s)	373, 514
Ppu21I	YACGTR	1 cut(s)	260
PsiI	TTATAA	1 cut(s)	533
PspCI	CACGTG	1 cut(s)	260
PspN4I	GGNNCC	3 cut(s)	173, 224, 395
PspPI	GGNCC	2 cut(s)	199, 559
PstI	CTGCAG	1 cut(s)	254
PsyI	GACNNNGTC	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	3 cut(s)	250, 253, 354
Sau96I	GGNCC	2 cut(s)	199, 559
SchI	GAGTC	2 cut(s)	374, 515
SduI	GDGCHC	1 cut(s)	412
SfaNI	GCATC	2 cut(s)	466, 492
SfcI	CTRYAG	2 cut(s)	250, 471
SfoI	GGCGCC	1 cut(s)	224
SinI	GGWCC	2 cut(s)	199, 559
SphI	GCATGC	1 cut(s)	483
Sse9I	AATT	1 cut(s)	99
SsiI	CCGC	3 cut(s)	215, 285, 488
SspDI	GGCGCC	1 cut(s)	222
SspI	AATATT	1 cut(s)	360
SspMI	CTAG	2 cut(s)	77, 335
TaaI	ACNGT	3 cut(s)	298, 350, 428
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	2 cut(s)	165, 270
TasI	AATT	1 cut(s)	99
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	2 cut(s)	334, 433
TseFI	GTSAC	3 cut(s)	260, 289, 507
TseI	GCWGC	3 cut(s)	249, 252, 353
Tsp45I	GTSAC	3 cut(s)	260, 289, 507
TspDTI	ATGAA	2 cut(s)	43, 47
TspRI	CASTG	2 cut(s)	334, 433
Tth111I	GACNNNGTC	1 cut(s)	275
Van91I	CCANNNNNTGG	2 cut(s)	390, 404
VpaK11BI	GGWCC	2 cut(s)	199, 559
XbaI	TCTAGA	1 cut(s)	76
XceI	RCATGY	1 cut(s)	483
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	2 cut(s)	77, 335
Zsp2I	ATGCAT	2 cut(s)	481, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.