Rorug03G0292600

ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
29927222 .. 29927548
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0292600.1

Sequence Viewer

Length: 327 bp
ATGGAGAGTGACTCACGCCAACAATTACGACTTGATAGGGCGGTTTGTACGCCATCGTGGTGTGATCTATTTAGCCATTCAAGACTTCGCCATTTGCCTCTGTCGGATTCAGATCACATCCCTATTTTGCTTCAGGCTAGCACAACTCCCTTGGTAACGAAAACCCGACACCGCCACTTCAAATTTGAAGCTTACTGGCTTCAGCATGCTGAATGCGATGGAGTTGTTAAGGAGGGGTGGAGCACTGATGTGACGGGCACACTTATGTACTGTGTAACAAAGAAGATCGCGTTTACACGACTGAAGCTAGATAAATGGCAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.64

Weight (kDa)

9.02

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 290
AciI CCGC 2 cut(s) 41, 172
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 3 cut(s) 116, 185, 323
AfaI GTAC 2 cut(s) 49, 269
AgsI TTSAA 3 cut(s) 81, 181, 188
AleI CACNNNNGTG 1 cut(s) 248
AluBI AGCT 2 cut(s) 191, 307
AluI AGCT 2 cut(s) 191, 307
Alw21I GWGCWC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 182
AsuNHI GCTAGC 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 245
BccI CCATC 2 cut(s) 61, 212
BfaI CTAG 2 cut(s) 138, 308
BmtI GCTAGC 1 cut(s) 141
BplI GAGNNNNNCTC 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 200
Bse8I GATNNNNATC 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 117
BseJI GATNNNNATC 1 cut(s) 111
BseNI ACTGG 1 cut(s) 200
BseSI GKGCMC 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 245
BsmI GAATGC 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 245, 260
Bsp143I GATC 3 cut(s) 64, 112, 285
BspACI CCGC 2 cut(s) 41, 172
BspFNI CGCG 1 cut(s) 290
BspOI GCTAGC 1 cut(s) 141
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 3 cut(s) 64, 112, 285
BssT1I CCWWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 139, 207
BstF5I GGATG 1 cut(s) 117
BstFNI CGCG 1 cut(s) 290
BstKTI GATC 3 cut(s) 67, 115, 288
BstMBI GATC 3 cut(s) 64, 112, 285
BstNSI RCATGY 1 cut(s) 209
BstSLI GKGCMC 1 cut(s) 260
BstUI CGCG 1 cut(s) 290
BtgZI GCGATG 1 cut(s) 231
BtsCI GGATG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 139, 207
Csp6I GTAC 2 cut(s) 48, 268
CviAII CATG 1 cut(s) 206
CviJI RGCY 5 cut(s) 75, 137, 191, 199, 307
CviKI_1 RGCY 5 cut(s) 75, 137, 191, 199, 307
CviQI GTAC 2 cut(s) 48, 268
DpnI GATC 3 cut(s) 66, 114, 287
DpnII GATC 3 cut(s) 64, 112, 285
Eco130I CCWWGG 1 cut(s) 150
Eco57I CTGAAG 3 cut(s) 116, 185, 323
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 1 cut(s) 209
FaiI YATR 2 cut(s) 207, 266
FatI CATG 1 cut(s) 205
FokI GGATG 1 cut(s) 104
FspBI CTAG 2 cut(s) 138, 308
Hin1II CATG 1 cut(s) 209
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 2 cut(s) 11, 107
Hpy166II GTNNAC 1 cut(s) 294
Hpy188I TCNGA 2 cut(s) 106, 112
Hpy188III TCNNGA 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 294
HpyCH4III ACNGT 1 cut(s) 272
Hsp92II CATG 1 cut(s) 209
Kzo9I GATC 3 cut(s) 64, 112, 285
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 2 cut(s) 119, 181
MaeI CTAG 2 cut(s) 138, 308
MaeIII GTNAC 4 cut(s) 8, 154, 250, 274
MalI GATC 3 cut(s) 66, 114, 287
MboI GATC 3 cut(s) 64, 112, 285
MboII GAAGA 1 cut(s) 295
MhlI GDGCHC 2 cut(s) 245, 260
MluCI AATT 2 cut(s) 23, 182
MlyI GAGTC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 2 cut(s) 108, 226
MseI TTAA 1 cut(s) 228
MslI CAYNNNNRTG 3 cut(s) 58, 248, 263
Mva1269I GAATGC 1 cut(s) 218
MvnI CGCG 1 cut(s) 290
NdeII GATC 3 cut(s) 64, 112, 285
NheI GCTAGC 1 cut(s) 137
NlaIII CATG 1 cut(s) 209
NmuCI GTSAC 2 cut(s) 8, 250
NspI RCATGY 1 cut(s) 209
OliI CACNNNNGTG 1 cut(s) 248
PaeI GCATGC 1 cut(s) 209
PctI GAATGC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 107
PleI GAGTC 1 cut(s) 5
PpsI GAGTC 1 cut(s) 5
RsaI GTAC 2 cut(s) 49, 269
RsaNI GTAC 2 cut(s) 48, 268
RseI CAYNNNNRTG 3 cut(s) 58, 248, 263
SaqAI TTAA 1 cut(s) 228
Sau3AI GATC 3 cut(s) 64, 112, 285
SchI GAGTC 1 cut(s) 5
SduI GDGCHC 2 cut(s) 245, 260
SetI ASST 2 cut(s) 193, 309
SmiMI CAYNNNNRTG 3 cut(s) 58, 248, 263
SphI GCATGC 1 cut(s) 209
Sse9I AATT 2 cut(s) 23, 182
SsiI CCGC 2 cut(s) 41, 172
SspMI CTAG 2 cut(s) 138, 308
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 272
TasI AATT 2 cut(s) 23, 182
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 2 cut(s) 8, 250
Tsp45I GTSAC 2 cut(s) 8, 250
TspRI CASTG 1 cut(s) 250
XapI RAATTY 1 cut(s) 182
XceI RCATGY 1 cut(s) 209
XspI CTAG 2 cut(s) 138, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.