Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001508

Physical Location & Seq

Genomic Coordinates Forward (+)

23344401 .. 23347768

Gene Structure 3368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g25400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTTACTATATCTAGCGGACAAATGCAAGCAACCACCTGAACACCGCCGACTTTTCCAGCTCAAAGAACCTCTTCACAATCAACCCCGGCACCCTCCGGCCTGTATCACCTCCGAAAAATCCTCGTCCATGGCGGTGGATGCAGCTATTGAAACCCTGTCTCCTCGGTTTCACTCTCCTTCCCATTTCAGCCCGCAGGGCCACTTCTACCTCGCCGTCGACGGACACCATTTCAAGATGGAGACGTTGATGGACCTATTGGGCGTGGCGGGTAGGCGTCCGGGGTTGCCCATGGTGGTCTGCTGCAGCTCACGGGACGAGCTCGACGCCGTCTGCTCCGCCGTCACCAATGTCACCAATGTCCCCTATATCTCTTTGGCTTCTCTGTACACTGACCTAGCTGAAGCAGACCGTTCTTTAATATTAGAGCATTTTCGGCAAGCAACAATGAGGTGGAACCCAGAAGTCAGTGCTCAACCAGCAGTTGATAGTGAGTCTGTGAAAGATGAACAAAAATCTCATATGATATTTGCAACAGATGCATGCCTTCCGCTGCTTGCTTCTGGGGAGTCACCTATAGCAGCTCGTGTTCTTATAAATTACGAGTTACCGACAAAGAAGGTACATTCTTCCTTTGGGAATTGGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

Helicase_C

Protein Analysis

217

Amino Acids

24.01

Weight (kDa)

6.24

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37020 AT4G37020
fragaria_vesca	FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950
malus_domestica	MD02G1301600.v1.1 MD02G1301800.v1.1 MD07G1022300.v1.1 MD17G1282900.v1.1
prunus_persica	Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1
pyrus_communis	pycom02g25340 pycom02g25350 pycom02g25400
rosa_chinensis	RchiOBHm_Chr2g0105351 RchiOBHm_Chr3g0472951
rosa_laevigata	RLG00000017419
rosa_multiflora	Rmu_co8381435.1_g000001 Rmu_sc0001407.1_g000022
rosa_roxburghii	Rroxscaffold_1G00022310 Rroxscaffold_2G00114060 Rroxscaffold_2G00126470 Rroxscaffold_2G00138270 Rroxscaffold_4G00312150 Rroxscaffold_4G00329030 Rroxscaffold_5G00344210 Rroxscaffold_5G00351740 Rroxscaffold_6G00388800 Rroxscaffold_6G00408610
rosa_rugosa	Rorug02G0127800 Rorug03G0292600
rosa_samantha	Rh1BG139100 Rh2AG178500 Rh2AG329700 Rh2BG186900 Rh2CG183000 Rh2DG184400 Rh3BG143700 Rh3BG208100 Rh3CG145000 Rh3DG145000 Rh3DG167900 Rh5DG241200 Rh5DG275600 Rh6DG097100 Rh6DG389000
rosa_wichuraiana	Rw2G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	596
AccB1I	GGYRCC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	7 cut(s)	17, 46, 134, 194, 269, 339, 551
AcuI	CTGAAG	1 cut(s)	423
AcyI	GRCGYC	2 cut(s)	277, 327
AfaI	GTAC	2 cut(s)	389, 624
AgsI	TTSAA	2 cut(s)	152, 235
AluBI	AGCT	6 cut(s)	61, 146, 309, 322, 401, 584
AluI	AGCT	6 cut(s)	61, 146, 309, 322, 401, 584
Alw21I	GWGCWC	2 cut(s)	324, 475
Alw26I	GTCTC	2 cut(s)	165, 236
AoxI	GGCC	2 cut(s)	99, 199
ApeKI	GCWGC	5 cut(s)	143, 303, 306, 553, 581
Asp700I	GAANNNNTTC	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	199, 253
AsuC2I	CCSGG	2 cut(s)	88, 282
AsuHPI	GGTGA	4 cut(s)	100, 337, 346, 564
AvaII	GGWCC	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	324
BauI	CACGAG	1 cut(s)	585
Bbv12I	GWGCWC	2 cut(s)	324, 475
BbvI	GCAGC	5 cut(s)	155, 290, 318, 540, 593
BccI	CCATC	2 cut(s)	232, 244
BceAI	ACGGC	3 cut(s)	200, 314, 326
BcnI	CCSGG	2 cut(s)	88, 282
BcoDI	GTCTC	2 cut(s)	165, 236
BfaI	CTAG	2 cut(s)	14, 398
BfmI	CTRYAG	2 cut(s)	304, 576
BglI	GCCNNNNNGGC	1 cut(s)	198
BisI	GCNGC	5 cut(s)	144, 304, 307, 554, 582
BlsI	GCNGC	5 cut(s)	145, 305, 308, 555, 583
Bme1390I	CCNGG	2 cut(s)	88, 282
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	199, 253
BmiI	GGNNCC	2 cut(s)	92, 458
BmrFI	CCNGG	2 cut(s)	88, 282
BmsI	GCATC	2 cut(s)	130, 529
BpuMI	CCSGG	2 cut(s)	88, 282
BsaHI	GRCGYC	2 cut(s)	277, 327
BsaJI	CCNNGG	5 cut(s)	86, 129, 164, 281, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
BseDI	CCNNGG	5 cut(s)	86, 129, 164, 281, 291
BseGI	GGATG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	5 cut(s)	155, 290, 318, 540, 593
BshFI	GGCC	2 cut(s)	101, 201
BshNI	GGYRCC	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	324, 475
BsiSI	CCGG	3 cut(s)	88, 98, 281
BslFI	GGGAC	2 cut(s)	329, 347
BsmAI	GTCTC	2 cut(s)	165, 236
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	2 cut(s)	329, 347
BsnI	GGCC	2 cut(s)	101, 201
Bsp1286I	GDGCHC	2 cut(s)	324, 475
Bsp1407I	TGTACA	1 cut(s)	387
Bsp19I	CCATGG	2 cut(s)	129, 291
BspACI	CCGC	7 cut(s)	17, 46, 134, 194, 269, 339, 551
BspANI	GGCC	2 cut(s)	101, 201
BspLI	GGNNCC	2 cut(s)	92, 458
BspMAI	CTGCAG	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	90
BsrGI	TGTACA	1 cut(s)	387
BssECI	CCNNGG	5 cut(s)	86, 129, 164, 281, 291
BssNI	GRCGYC	2 cut(s)	277, 327
BssSI	CACGAG	1 cut(s)	585
BssT1I	CCWWGG	2 cut(s)	129, 291
Bst2BI	CACGAG	1 cut(s)	585
Bst4CI	ACNGT	1 cut(s)	413
Bst6I	CTCTTC	1 cut(s)	78
BstACI	GRCGYC	2 cut(s)	277, 327
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstAUI	TGTACA	1 cut(s)	387
BstC8I	GCNNGC	5 cut(s)	29, 194, 441, 544, 558
BstDEI	CTNAG	1 cut(s)	648
BstDSI	CCRYGG	2 cut(s)	129, 291
BstF5I	GGATG	1 cut(s)	145
BstMAI	GTCTC	2 cut(s)	165, 236
BstMWI	GCNNNNNNNGC	5 cut(s)	140, 198, 436, 479, 539
BstNSI	RCATGY	1 cut(s)	546
BstSCI	CCNGG	2 cut(s)	86, 280
BstSFI	CTRYAG	2 cut(s)	304, 576
BstV1I	GCAGC	5 cut(s)	155, 290, 318, 540, 593
BstXI	CCANNNNNNTGG	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	101, 201
BtgI	CCRYGG	2 cut(s)	129, 291
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	2 cut(s)	390, 475
Cac8I	GCNNGC	5 cut(s)	29, 194, 441, 544, 558
Cfr13I	GGNCC	2 cut(s)	199, 253
CseI	GACGC	2 cut(s)	266, 335
Csp6I	GTAC	2 cut(s)	388, 623
CviAII	CATG	3 cut(s)	130, 292, 543
CviQI	GTAC	2 cut(s)	388, 623
DdeI	CTNAG	1 cut(s)	648
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
EciI	GGCGGA	1 cut(s)	328
Ecl136II	GAGCTC	1 cut(s)	322
Eco130I	CCWWGG	2 cut(s)	129, 291
Eco24I	GRGCYC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	423
EcoICRI	GAGCTC	1 cut(s)	322
EcoT14I	CCWWGG	2 cut(s)	129, 291
EcoT22I	ATGCAT	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	2 cut(s)	129, 291
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	3 cut(s)	133, 295, 546
FaiI	YATR	9 cut(s)	10, 131, 293, 369, 522, 524, 544, 578, 596
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	2 cut(s)	329, 347
FatI	CATG	3 cut(s)	129, 291, 542
FauI	CCCGC	2 cut(s)	201, 262
FauNDI	CATATG	1 cut(s)	522
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	5 cut(s)	144, 304, 307, 554, 582
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	5 cut(s)	144, 304, 307, 554, 582
FspBI	CTAG	2 cut(s)	14, 398
GluI	GCNGC	5 cut(s)	144, 304, 307, 554, 582
HaeIII	GGCC	2 cut(s)	101, 201
HapII	CCGG	3 cut(s)	88, 98, 281
HgaI	GACGC	2 cut(s)	266, 335
Hin1I	GRCGYC	2 cut(s)	277, 327
Hin1II	CATG	3 cut(s)	133, 295, 546
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	2 cut(s)	494, 569
HpaII	CCGG	3 cut(s)	88, 98, 281
HphI	GGTGA	4 cut(s)	100, 337, 346, 564
Hpy166II	GTNNAC	2 cut(s)	220, 390
Hpy188I	TCNGA	1 cut(s)	115
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	2 cut(s)	220, 390
Hpy99I	CGWCG	3 cut(s)	221, 224, 329
HpyAV	CCTTC	3 cut(s)	189, 557, 613
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	5 cut(s)	27, 143, 306, 533, 542
HpyF10VI	GCNNNNNNNGC	5 cut(s)	140, 198, 436, 479, 539
HpyF3I	CTNAG	1 cut(s)	648
HpySE526I	ACGT	1 cut(s)	245
Hsp92I	GRCGYC	2 cut(s)	277, 327
Hsp92II	CATG	3 cut(s)	133, 295, 546
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	5 cut(s)	155, 290, 318, 540, 593
LweI	GCATC	2 cut(s)	130, 529
MaeI	CTAG	2 cut(s)	14, 398
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	5 cut(s)	3, 343, 352, 570, 606
MboII	GAAGA	2 cut(s)	65, 621
MhlI	GDGCHC	2 cut(s)	324, 475
MluCI	AATT	2 cut(s)	598, 640
MlyI	GAGTC	2 cut(s)	503, 578
MnlI	CCTC	7 cut(s)	81, 105, 121, 133, 174, 221, 444
Mph1103I	ATGCAT	1 cut(s)	544
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	1 cut(s)	419
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	553
MspI	CCGG	3 cut(s)	88, 98, 281
MspR9I	CCNGG	2 cut(s)	88, 282
MwoI	GCNNNNNNNGC	5 cut(s)	140, 198, 436, 479, 539
NciI	CCSGG	2 cut(s)	88, 282
NcoI	CCATGG	2 cut(s)	129, 291
NdeI	CATATG	1 cut(s)	522
NlaIII	CATG	3 cut(s)	133, 295, 546
NlaIV	GGNNCC	2 cut(s)	92, 458
NmuCI	GTSAC	3 cut(s)	343, 352, 570
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	1 cut(s)	546
PaeI	GCATGC	1 cut(s)	546
PdmI	GAANNNNTTC	1 cut(s)	72
PflFI	GACNNNGTC	1 cut(s)	329
PkrI	GCNGC	5 cut(s)	145, 305, 308, 555, 583
PleI	GAGTC	2 cut(s)	502, 577
PpsI	GAGTC	2 cut(s)	502, 577
PsiI	TTATAA	1 cut(s)	596
Psp124BI	GAGCTC	1 cut(s)	324
PspN4I	GGNNCC	2 cut(s)	92, 458
PspPI	GGNCC	2 cut(s)	199, 253
PstI	CTGCAG	1 cut(s)	308
PsyI	GACNNNGTC	1 cut(s)	329
RsaI	GTAC	2 cut(s)	389, 624
RsaNI	GTAC	2 cut(s)	388, 623
RseI	CAYNNNNRTG	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	324
SalI	GTCGAC	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	419
SatI	GCNGC	5 cut(s)	144, 304, 307, 554, 582
Sau96I	GGNCC	2 cut(s)	199, 253
SchI	GAGTC	2 cut(s)	503, 578
ScrFI	CCNGG	2 cut(s)	88, 282
SduI	GDGCHC	2 cut(s)	324, 475
SfaNI	GCATC	2 cut(s)	130, 529
SfcI	CTRYAG	2 cut(s)	304, 576
SgrDI	CGTCGACG	1 cut(s)	218
SinI	GGWCC	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	134
SphI	GCATGC	1 cut(s)	546
Sse9I	AATT	2 cut(s)	598, 640
SsiI	CCGC	7 cut(s)	17, 46, 134, 194, 269, 339, 551
SspI	AATATT	1 cut(s)	423
SspMI	CTAG	2 cut(s)	14, 398
SstI	GAGCTC	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	86, 280
StyI	CCWWGG	2 cut(s)	129, 291
TaaI	ACNGT	1 cut(s)	413
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	2 cut(s)	219, 324
TasI	AATT	2 cut(s)	598, 640
TatI	WGTACW	1 cut(s)	387
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TscAI	CASTG	2 cut(s)	397, 475
TseFI	GTSAC	3 cut(s)	343, 352, 570
TseI	GCWGC	5 cut(s)	143, 303, 306, 553, 581
Tsp45I	GTSAC	3 cut(s)	343, 352, 570
TspDTI	ATGAA	1 cut(s)	522
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	2 cut(s)	397, 475
Tth111I	GACNNNGTC	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	253
XceI	RCATGY	1 cut(s)	546
XmiI	GTMKAC	1 cut(s)	219
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	2 cut(s)	14, 398
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.