Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001508

Physical Location & Seq

Genomic Coordinates Reverse (-)

39940661 .. 39954252

Gene Structure 13592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGACCTGTTGGGCGTGGCGGGAAGGCGTCCTTGTCTTCCAATGGTGGTCTGCTACAGCTCACGTGACGAGCTCGACGCCGTCGGCTCCACCGTCGCAACCGTCCCCTTTATCTCTTTAGCCCCTCTGCCTCTTGGAGAGCATGGGAGGGTGGCCTCCCGACTAGATACCAGCCGACCTCCACCATGGCAATGTAGCTCGGATGTCGGCCTACGGATGCATGCCATAGGCGGGGCTAGCCATGTTGTGGGGCCCAACTATGAGGTCGTTGATTATGCTTGGCGTGTTGATAAACTATTGGCATCTGCAGATGGTCACTCATTGCATGGAGACTTCCGGGGCGAACAGACACCGAAATCAAGAATCACCGGGACCTATGTGCATGTGAAAAGCACATTATGTGCATTCGTCAAAGAAACAGACGAAGAGGGAATCAAGCAATTACAAATCACAGCTCAATCAGCATTTAGTATCATCAATCTTGATGTATATTCATTTGGCATTGTTATGTGGGAACTTTTGACTGGGGAGGAACCTTATGCAAACTTGCCCTCAGAGGAAATAATAACTGGTACAATAGATGGCAAGCATCCTGAAATACCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

Helicase_C

Protein Analysis

202

Amino Acids

21.92

Weight (kDa)

5.17

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	160 - 201	2.5e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37020 AT4G37020
fragaria_vesca	FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950
malus_domestica	MD02G1301600.v1.1 MD02G1301800.v1.1 MD07G1022300.v1.1 MD17G1282900.v1.1
prunus_persica	Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1
pyrus_communis	pycom02g25340 pycom02g25350 pycom02g25400
rosa_chinensis	RchiOBHm_Chr2g0105351 RchiOBHm_Chr3g0472951
rosa_laevigata	RLG00000017419
rosa_multiflora	Rmu_co8381435.1_g000001 Rmu_sc0001407.1_g000022
rosa_roxburghii	Rroxscaffold_1G00022310 Rroxscaffold_2G00114060 Rroxscaffold_2G00126470 Rroxscaffold_2G00138270 Rroxscaffold_4G00312150 Rroxscaffold_4G00329030 Rroxscaffold_5G00344210 Rroxscaffold_5G00351740 Rroxscaffold_6G00388800 Rroxscaffold_6G00408610
rosa_rugosa	Rorug02G0127800 Rorug03G0292600
rosa_samantha	Rh1BG139100 Rh2AG178500 Rh2AG329700 Rh2BG186900 Rh2CG183000 Rh2DG184400 Rh3BG143700 Rh3BG208100 Rh3CG145000 Rh3DG145000 Rh3DG167900 Rh5DG241200 Rh5DG275600 Rh6DG097100 Rh6DG389000
rosa_wichuraiana	Rw2G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	247
AciI	CCGC	2 cut(s)	20, 231
AcvI	CACGTG	1 cut(s)	65
AcyI	GRCGYC	2 cut(s)	28, 78
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	2 cut(s)	231, 247
AluBI	AGCT	4 cut(s)	60, 73, 198, 455
AluI	AGCT	4 cut(s)	60, 73, 198, 455
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	324
AoxI	GGCC	3 cut(s)	153, 208, 251
ApaI	GGGCCC	1 cut(s)	255
AspS9I	GGNCC	4 cut(s)	4, 251, 252, 372
AsuC2I	CCSGG	2 cut(s)	338, 370
AsuHPI	GGTGA	1 cut(s)	358
AsuNHI	GCTAGC	1 cut(s)	236
AvaII	GGWCC	2 cut(s)	4, 372
BaeGI	GKGCMC	1 cut(s)	255
BanII	GRGCYC	2 cut(s)	75, 255
BbrPI	CACGTG	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	75
BccI	CCATC	2 cut(s)	305, 575
BceAI	ACGGC	1 cut(s)	65
BcnI	CCSGG	2 cut(s)	338, 370
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	3 cut(s)	164, 237, 607
BfmI	CTRYAG	2 cut(s)	55, 306
Bme1390I	CCNGG	2 cut(s)	338, 370
Bme18I	GGWCC	2 cut(s)	4, 372
BmgT120I	GGNCC	4 cut(s)	4, 251, 252, 372
BmiI	GGNNCC	5 cut(s)	88, 252, 253, 373, 534
BmrFI	CCNGG	2 cut(s)	338, 370
BmrI	ACTGGG	1 cut(s)	534
BmsI	GCATC	3 cut(s)	207, 311, 598
BmtI	GCTAGC	1 cut(s)	240
BmuI	ACTGGG	1 cut(s)	534
BpiI	GAAGAC	1 cut(s)	29
BpuMI	CCSGG	2 cut(s)	338, 370
BsaAI	YACGTR	1 cut(s)	65
BsaHI	GRCGYC	2 cut(s)	28, 78
BsaJI	CCNNGG	2 cut(s)	185, 337
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 247
Bse1I	ACTGG	2 cut(s)	529, 574
Bse3DI	GCAATG	2 cut(s)	197, 320
BseDI	CCNNGG	2 cut(s)	185, 337
BseGI	GGATG	3 cut(s)	208, 222, 589
BseLI	CCNNNNNNNGG	2 cut(s)	231, 247
BseMI	GCAATG	2 cut(s)	197, 320
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	2 cut(s)	529, 574
BseSI	GKGCMC	1 cut(s)	255
BshFI	GGCC	3 cut(s)	155, 210, 253
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	337, 369
BslFI	GGGAC	2 cut(s)	89, 385
BslI	CCNNNNNNNGG	2 cut(s)	231, 247
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	2 cut(s)	89, 385
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	3 cut(s)	155, 210, 253
Bsp120I	GGGCCC	1 cut(s)	251
Bsp1286I	GDGCHC	2 cut(s)	75, 255
Bsp19I	CCATGG	1 cut(s)	185
BspACI	CCGC	2 cut(s)	20, 231
BspANI	GGCC	3 cut(s)	155, 210, 253
BspCNI	CTCAG	1 cut(s)	566
BspLI	GGNNCC	5 cut(s)	88, 252, 253, 373, 534
BspMAI	CTGCAG	1 cut(s)	310
BspOI	GCTAGC	1 cut(s)	240
BsrDI	GCAATG	2 cut(s)	197, 320
BsrI	ACTGG	2 cut(s)	529, 574
BssECI	CCNNGG	2 cut(s)	185, 337
BssNI	GRCGYC	2 cut(s)	28, 78
BssT1I	CCWWGG	1 cut(s)	185
Bst4CI	ACNGT	2 cut(s)	94, 103
Bst6I	CTCTTC	1 cut(s)	420
BstACI	GRCGYC	2 cut(s)	28, 78
BstBAI	YACGTR	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	222, 238, 587
BstDEI	CTNAG	1 cut(s)	553
BstDSI	CCRYGG	1 cut(s)	185
BstF5I	GGATG	3 cut(s)	208, 222, 589
BstMAI	GTCTC	1 cut(s)	324
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 461
BstNSI	RCATGY	2 cut(s)	224, 386
BstSCI	CCNGG	2 cut(s)	336, 368
BstSFI	CTRYAG	2 cut(s)	55, 306
BstSLI	GKGCMC	1 cut(s)	255
BstV2I	GAAGAC	1 cut(s)	29
BsuRI	GGCC	3 cut(s)	155, 210, 253
BtgI	CCRYGG	1 cut(s)	185
BtsCI	GGATG	3 cut(s)	208, 222, 589
Cac8I	GCNNGC	3 cut(s)	222, 238, 587
Cfr13I	GGNCC	4 cut(s)	4, 251, 252, 372
CseI	GACGC	2 cut(s)	17, 86
Csp6I	GTAC	1 cut(s)	573
CviAII	CATG	6 cut(s)	143, 186, 221, 242, 326, 383
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	1 cut(s)	553
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Ecl136II	GAGCTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	185
Eco24I	GRGCYC	2 cut(s)	75, 255
Eco47I	GGWCC	2 cut(s)	4, 372
Eco53kI	GAGCTC	1 cut(s)	73
Eco72I	CACGTG	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	73
EcoO109I	RGGNCCY	2 cut(s)	251, 372
EcoT14I	CCWWGG	1 cut(s)	185
EcoT22I	ATGCAT	1 cut(s)	222
EcoT38I	GRGCYC	2 cut(s)	75, 255
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	6 cut(s)	146, 189, 224, 245, 329, 386
FalI	AAGNNNNNCTT	2 cut(s)	16, 48
FaqI	GGGAC	2 cut(s)	89, 385
FatI	CATG	6 cut(s)	142, 185, 220, 241, 325, 382
FauI	CCCGC	2 cut(s)	13, 224
FokI	GGATG	3 cut(s)	215, 229, 576
FriOI	GRGCYC	2 cut(s)	75, 255
FspBI	CTAG	3 cut(s)	164, 237, 607
HaeIII	GGCC	3 cut(s)	155, 210, 253
HapII	CCGG	2 cut(s)	337, 369
HgaI	GACGC	2 cut(s)	17, 86
Hin1I	GRCGYC	2 cut(s)	28, 78
Hin1II	CATG	6 cut(s)	146, 189, 224, 245, 329, 386
HinfI	GANTC	2 cut(s)	363, 432
HpaII	CCGG	2 cut(s)	337, 369
HphI	GGTGA	1 cut(s)	358
Hpy188I	TCNGA	2 cut(s)	202, 556
Hpy188III	TCNNGA	4 cut(s)	159, 360, 482, 593
Hpy99I	CGWCG	3 cut(s)	80, 86, 98
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	2 cut(s)	94, 103
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	6 cut(s)	220, 308, 325, 382, 404, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 461
HpyF3I	CTNAG	1 cut(s)	553
HpySE526I	ACGT	1 cut(s)	64
Hsp92I	GRCGYC	2 cut(s)	28, 78
Hsp92II	CATG	6 cut(s)	146, 189, 224, 245, 329, 386
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	6 cut(s)	20, 184, 350, 382, 510, 555
LweI	GCATC	3 cut(s)	207, 311, 598
MaeI	CTAG	3 cut(s)	164, 237, 607
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	2 cut(s)	65, 314
MboII	GAAGA	2 cut(s)	29, 437
MhlI	GDGCHC	2 cut(s)	75, 255
MluCI	AATT	1 cut(s)	440
Mph1103I	ATGCAT	1 cut(s)	222
MslI	CAYNNNNRTG	2 cut(s)	190, 506
MspI	CCGG	2 cut(s)	337, 369
MspR9I	CCNGG	2 cut(s)	338, 370
Mva1269I	GAATGC	1 cut(s)	404
MwoI	GCNNNNNNNGC	2 cut(s)	237, 461
NciI	CCSGG	2 cut(s)	338, 370
NcoI	CCATGG	1 cut(s)	185
NheI	GCTAGC	1 cut(s)	236
NlaIII	CATG	6 cut(s)	146, 189, 224, 245, 329, 386
NlaIV	GGNNCC	5 cut(s)	88, 252, 253, 373, 534
NmuCI	GTSAC	2 cut(s)	65, 314
NsiI	ATGCAT	1 cut(s)	222
NspI	RCATGY	2 cut(s)	224, 386
PaeI	GCATGC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	363, 432
PflFI	GACNNNGTC	1 cut(s)	80
PflMI	CCANNNNNTGG	1 cut(s)	247
PmaCI	CACGTG	1 cut(s)	65
PmlI	CACGTG	1 cut(s)	65
Ppu21I	YACGTR	1 cut(s)	65
PpuMI	RGGWCCY	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	372
PspCI	CACGTG	1 cut(s)	65
PspN4I	GGNNCC	5 cut(s)	88, 252, 253, 373, 534
PspOMI	GGGCCC	1 cut(s)	251
PspPI	GGNCC	4 cut(s)	4, 251, 252, 372
PspPPI	RGGWCCY	1 cut(s)	372
PstI	CTGCAG	1 cut(s)	310
PsyI	GACNNNGTC	1 cut(s)	80
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
RseI	CAYNNNNRTG	2 cut(s)	190, 506
SacI	GAGCTC	1 cut(s)	75
Sau96I	GGNCC	4 cut(s)	4, 251, 252, 372
ScrFI	CCNGG	2 cut(s)	338, 370
SduI	GDGCHC	2 cut(s)	75, 255
SfaNI	GCATC	3 cut(s)	207, 311, 598
SfcI	CTRYAG	2 cut(s)	55, 306
SinI	GGWCC	2 cut(s)	4, 372
SmiMI	CAYNNNNRTG	2 cut(s)	190, 506
SphI	GCATGC	1 cut(s)	224
Sse9I	AATT	1 cut(s)	440
SsiI	CCGC	2 cut(s)	20, 231
SspMI	CTAG	3 cut(s)	164, 237, 607
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	336, 368
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	94, 103
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	440
TfiI	GAWTC	2 cut(s)	363, 432
TseFI	GTSAC	2 cut(s)	65, 314
Tsp45I	GTSAC	2 cut(s)	65, 314
TspDTI	ATGAA	1 cut(s)	483
TspGWI	ACGGA	1 cut(s)	229
Tth111I	GACNNNGTC	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	247
VpaK11BI	GGWCC	2 cut(s)	4, 372
XceI	RCATGY	2 cut(s)	224, 386
XspI	CTAG	3 cut(s)	164, 237, 607
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.