Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001508

Physical Location & Seq

Genomic Coordinates Forward (+)

35610646 .. 35613299

Gene Structure 2654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1301600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCGGTGGATGCAGCTTTTGAAATCCCGTCTCCTCCGTTTTACTCCCCTTCTTCCCATTTCAGCCCGCAGCGCCACTTCTACCTCGCCGTCGACAGACACCAGTTCAAGATGGAGACCTTGATGGACTTATTGGGCGTGGCGGGTCGGCGTCCGGGGTTGCCCATGGTGGTCTGCTGCAGCTCACGTGACGAGCTCGACGCCGTTAGCTCCGCCGTCGCCAACGTCCCCTATATCTCTTTGGCTTCTCTGTACACTGACCTTGCTGAAGCAGACCGTTCTTTAATATTAGAGCATTTTCGGCAAGCAACAATGAGATGGAACCCAGAAGTGAGTGCTCAATCAGCAGTTGATAATGAGTCTGTGAAAGATGAACAAAAATCTCATATGATAGTTGCAACAGATGCATGCCTTCCGCTGCTTGCTTCTGGGGAGTCACCTATAGCTGCCCGTGTTCTTATAAATTATGAGTTACCGACAAAGAAGGAAACATATACAAGGCGTATGACAACTTGTTTGGCTGCAGATGGGATTGTAATCAACATGGTCGTCGGGGGTGAGGTAGTAACTCTCAAAAGTCTTGAAGAAAGTAGCAACCTGGTCATAGCTGAGATGCCCATACATATTTCTGAGATTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

Helicase_C

Protein Analysis

214

Amino Acids

23.4

Weight (kDa)

5.01

Isoelectric Point (pI)

60.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37020 AT4G37020
fragaria_vesca	FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950
malus_domestica	MD02G1301600.v1.1 MD02G1301800.v1.1 MD07G1022300.v1.1 MD17G1282900.v1.1
prunus_persica	Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1
pyrus_communis	pycom02g25340 pycom02g25350 pycom02g25400
rosa_chinensis	RchiOBHm_Chr2g0105351 RchiOBHm_Chr3g0472951
rosa_laevigata	RLG00000017419
rosa_multiflora	Rmu_co8381435.1_g000001 Rmu_sc0001407.1_g000022
rosa_roxburghii	Rroxscaffold_1G00022310 Rroxscaffold_2G00114060 Rroxscaffold_2G00126470 Rroxscaffold_2G00138270 Rroxscaffold_4G00312150 Rroxscaffold_4G00329030 Rroxscaffold_5G00344210 Rroxscaffold_5G00351740 Rroxscaffold_6G00388800 Rroxscaffold_6G00408610
rosa_rugosa	Rorug02G0127800 Rorug03G0292600
rosa_samantha	Rh1BG139100 Rh2AG178500 Rh2AG329700 Rh2BG186900 Rh2CG183000 Rh2DG184400 Rh3BG143700 Rh3BG208100 Rh3CG145000 Rh3DG145000 Rh3DG167900 Rh5DG241200 Rh5DG275600 Rh6DG097100 Rh6DG389000
rosa_wichuraiana	Rw2G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	5 cut(s)	5, 68, 143, 213, 416
AcuI	CTGAAG	1 cut(s)	288
AcvI	CACGTG	1 cut(s)	188
AcyI	GRCGYC	2 cut(s)	151, 201
AfaI	GTAC	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	23, 109, 584
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	6 cut(s)	17, 183, 196, 210, 446, 608
AluI	AGCT	6 cut(s)	17, 183, 196, 210, 446, 608
Alw21I	GWGCWC	2 cut(s)	198, 340
Alw26I	GTCTC	2 cut(s)	36, 110
ApeKI	GCWGC	7 cut(s)	14, 70, 177, 180, 418, 446, 521
ArsI	GACNNNNNNTTYG	2 cut(s)	499, 531
AspLEI	GCGC	1 cut(s)	75
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	2 cut(s)	429, 569
BanII	GRGCYC	1 cut(s)	198
BbrPI	CACGTG	1 cut(s)	188
Bbv12I	GWGCWC	2 cut(s)	198, 340
BbvI	GCAGC	7 cut(s)	26, 82, 164, 192, 405, 433, 508
BccI	CCATC	4 cut(s)	106, 118, 312, 521
BceAI	ACGGC	3 cut(s)	74, 188, 200
BciT130I	CCWGG	1 cut(s)	599
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	2 cut(s)	36, 110
BfmI	CTRYAG	3 cut(s)	178, 441, 522
BfoI	RGCGCY	1 cut(s)	76
BisI	GCNGC	7 cut(s)	15, 71, 178, 181, 419, 447, 522
BlsI	GCNGC	7 cut(s)	16, 72, 179, 182, 420, 448, 523
Bme1390I	CCNGG	2 cut(s)	156, 599
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	2 cut(s)	156, 599
BmsI	GCATC	2 cut(s)	394, 603
BpuMI	CCSGG	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	536
BsaHI	GRCGYC	2 cut(s)	151, 201
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	155, 165
Bse1I	ACTGG	1 cut(s)	103
Bse8I	GATNNNNATC	1 cut(s)	536
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	2 cut(s)	155, 165
BseGI	GGATG	1 cut(s)	16
BseJI	GATNNNNATC	1 cut(s)	536
BseMII	CTCAG	2 cut(s)	600, 621
BseNI	ACTGG	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	7 cut(s)	26, 82, 164, 192, 405, 433, 508
BsiHKAI	GWGCWC	2 cut(s)	198, 340
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	212
BsmAI	GTCTC	2 cut(s)	36, 110
BsmBI	CGTCTC	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	212
Bso31I	GGTCTC	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	198, 340
Bsp1407I	TGTACA	1 cut(s)	252
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	5 cut(s)	5, 68, 143, 213, 416
BspCNI	CTCAG	2 cut(s)	601, 622
BspLI	GGNNCC	1 cut(s)	323
BspMAI	CTGCAG	2 cut(s)	182, 526
BspTNI	GGTCTC	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	155, 165
BssNI	GRCGYC	2 cut(s)	151, 201
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	1 cut(s)	278
BstACI	GRCGYC	2 cut(s)	151, 201
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstAUI	TGTACA	1 cut(s)	252
BstBAI	YACGTR	1 cut(s)	188
BstC8I	GCNNGC	4 cut(s)	68, 306, 409, 423
BstDEI	CTNAG	2 cut(s)	609, 630
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	16
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	75
BstMAI	GTCTC	2 cut(s)	36, 110
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 72, 301, 344, 404
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	411
BstSCI	CCNGG	2 cut(s)	154, 597
BstSFI	CTRYAG	3 cut(s)	178, 441, 522
BstV1I	GCAGC	7 cut(s)	26, 82, 164, 192, 405, 433, 508
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	4 cut(s)	68, 306, 409, 423
CfoI	GCGC	1 cut(s)	75
CseI	GACGC	2 cut(s)	140, 209
CsiI	ACCWGGT	1 cut(s)	597
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	3 cut(s)	166, 408, 544
CviJI	RGCY	9 cut(s)	17, 66, 183, 196, 210, 245, 446, 521, 608
CviKI_1	RGCY	9 cut(s)	17, 66, 183, 196, 210, 245, 446, 521, 608
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	2 cut(s)	609, 630
EciI	GGCGGA	1 cut(s)	202
Ecl136II	GAGCTC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	198
Eco31I	GGTCTC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	288
Eco72I	CACGTG	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	165
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	3 cut(s)	169, 411, 547
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	3 cut(s)	165, 407, 543
FauI	CCCGC	2 cut(s)	75, 136
FauNDI	CATATG	1 cut(s)	387
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	7 cut(s)	15, 71, 178, 181, 419, 447, 522
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	7 cut(s)	15, 71, 178, 181, 419, 447, 522
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	7 cut(s)	15, 71, 178, 181, 419, 447, 522
HaeII	RGCGCY	1 cut(s)	76
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	2 cut(s)	140, 209
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	2 cut(s)	151, 201
Hin1II	CATG	3 cut(s)	169, 411, 547
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	2 cut(s)	359, 434
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	2 cut(s)	429, 569
Hpy166II	GTNNAC	2 cut(s)	94, 255
Hpy188I	TCNGA	1 cut(s)	631
Hpy188III	TCNNGA	2 cut(s)	109, 581
Hpy8I	GTNNAC	2 cut(s)	94, 255
Hpy99I	CGWCG	4 cut(s)	95, 203, 221, 554
HpyAV	CCTTC	3 cut(s)	60, 422, 478
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	2 cut(s)	187, 225
HpyCH4V	TGCA	5 cut(s)	14, 180, 398, 407, 524
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 72, 301, 344, 404
HpyF3I	CTNAG	2 cut(s)	609, 630
HpySE526I	ACGT	2 cut(s)	187, 225
Hsp92I	GRCGYC	2 cut(s)	151, 201
Hsp92II	CATG	3 cut(s)	169, 411, 547
HspAI	GCGC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	6 cut(s)	116, 168, 339, 414, 584, 611
Lsp1109I	GCAGC	7 cut(s)	26, 82, 164, 192, 405, 433, 508
LweI	GCATC	2 cut(s)	394, 603
MabI	ACCWGGT	1 cut(s)	597
MaeII	ACGT	2 cut(s)	187, 225
MaeIII	GTNAC	4 cut(s)	188, 435, 471, 565
MboII	GAAGA	2 cut(s)	45, 596
MhlI	GDGCHC	2 cut(s)	198, 340
MluCI	AATT	1 cut(s)	463
MlyI	GAGTC	2 cut(s)	368, 443
MnlI	CCTC	3 cut(s)	45, 95, 553
Mph1103I	ATGCAT	1 cut(s)	409
MseI	TTAA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	418
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	2 cut(s)	156, 599
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	5 cut(s)	11, 72, 301, 344, 404
NciI	CCSGG	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	165
NdeI	CATATG	1 cut(s)	387
NlaIII	CATG	3 cut(s)	169, 411, 547
NlaIV	GGNNCC	1 cut(s)	323
NmuCI	GTSAC	2 cut(s)	188, 435
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	1 cut(s)	411
PaeI	GCATGC	1 cut(s)	411
PkrI	GCNGC	7 cut(s)	16, 72, 179, 182, 420, 448, 523
PleI	GAGTC	2 cut(s)	367, 442
PmaCI	CACGTG	1 cut(s)	188
PmlI	CACGTG	1 cut(s)	188
PpsI	GAGTC	2 cut(s)	367, 442
Ppu21I	YACGTR	1 cut(s)	188
PsiI	TTATAA	1 cut(s)	461
Psp124BI	GAGCTC	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	597
PspCI	CACGTG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	1 cut(s)	323
PstI	CTGCAG	2 cut(s)	182, 526
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	7 cut(s)	15, 71, 178, 181, 419, 447, 522
SchI	GAGTC	2 cut(s)	368, 443
ScrFI	CCNGG	2 cut(s)	156, 599
SduI	GDGCHC	2 cut(s)	198, 340
SexAI	ACCWGGT	1 cut(s)	597
SfaNI	GCATC	2 cut(s)	394, 603
SfcI	CTRYAG	3 cut(s)	178, 441, 522
SphI	GCATGC	1 cut(s)	411
Sse9I	AATT	1 cut(s)	463
SsiI	CCGC	5 cut(s)	5, 68, 143, 213, 416
SspI	AATATT	1 cut(s)	288
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	154, 597
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	2 cut(s)	190, 228
TaqI	TCGA	2 cut(s)	93, 198
TasI	AATT	1 cut(s)	463
TatI	WGTACW	1 cut(s)	252
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	2 cut(s)	188, 435
TseI	GCWGC	7 cut(s)	14, 70, 177, 180, 418, 446, 521
Tsp45I	GTSAC	2 cut(s)	188, 435
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	1 cut(s)	262
XceI	RCATGY	1 cut(s)	411
XmiI	GTMKAC	1 cut(s)	93
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.