RchiOBHm_Chr3g0472951

ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
18897339 .. 18901244
3906 bp
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UTR
Exon/CDS
Intron
PRQ43864

Sequence Viewer

Length: 252 bp
ATGGAGACATTTATGGACCTGTTGGGTGTGGCGGGAAGGCGTCCTTGTCTTCCAATGGTGGTCTGTTGCAGCTCACATGATGAGCTCGATGCCGTTAGCTCCACCATCGCAACCGTCCCCTATATCTCTTTAGCCCCTCTGGAGGAGGGAGATGCAATTGAAAATCAGAGAAAGAAAGATAAGAAGCTTGAAGTAGAGAAATCAAAGAAGATGCTTGCTTATGCAATTATTTGGGTTCATCCTTTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

9.31

Weight (kDa)

5.59

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 2 cut(s) 161, 191
AluBI AGCT 4 cut(s) 72, 85, 99, 187
AluI AGCT 4 cut(s) 72, 85, 99, 187
Alw21I GWGCWC 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 16
AvaII GGWCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 81
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 77
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 16
BmsI GCATC 3 cut(s) 79, 142, 201
BpiI GAAGAC 1 cut(s) 41
BpmI CTGGAG 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 142
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 87
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 87
BspACI CCGC 1 cut(s) 32
BssNI GRCGYC 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 115
BstACI GRCGYC 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 216
BstF5I GGATG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 81
BstV2I GAAGAC 1 cut(s) 41
BtgZI GCGATG 1 cut(s) 91
BtsCI GGATG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 16
CseI GACGC 1 cut(s) 29
CviAII CATG 1 cut(s) 77
CviJI RGCY 5 cut(s) 72, 85, 99, 134, 187
CviKI_1 RGCY 5 cut(s) 72, 85, 99, 134, 187
Ecl136II GAGCTC 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 87
FaeI CATG 1 cut(s) 80
FaiI YATR 4 cut(s) 14, 78, 123, 222
FalI AAGNNNNNCTT 2 cut(s) 28, 60
FaqI GGGAC 1 cut(s) 101
FatI CATG 1 cut(s) 76
FauI CCCGC 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 70
FokI GGATG 1 cut(s) 225
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 70
GsuI CTGGAG 1 cut(s) 161
HgaI GACGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 40
Hin1II CATG 1 cut(s) 80
HindIII AAGCTT 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 3 cut(s) 69, 155, 224
Hsp92I GRCGYC 1 cut(s) 40
Hsp92II CATG 1 cut(s) 80
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 2 cut(s) 32, 125
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 3 cut(s) 79, 142, 201
MboII GAAGA 3 cut(s) 41, 220, 238
MfeI CAATTG 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 2 cut(s) 156, 225
MnlI CCTC 3 cut(s) 136, 139, 147
MunI CAATTG 1 cut(s) 156
NlaIII CATG 1 cut(s) 80
PkrI GCNGC 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 16
SacI GAGCTC 1 cut(s) 87
SatI GCNGC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 16
SduI GDGCHC 1 cut(s) 87
SetI ASST 5 cut(s) 21, 74, 87, 101, 189
SfaNI GCATC 3 cut(s) 79, 142, 201
SgeI CNNG 8 cut(s) 31, 45, 57, 89, 98, 152, 200, 227
SinI GGWCC 1 cut(s) 16
Sse9I AATT 2 cut(s) 156, 225
SsiI CCGC 1 cut(s) 32
SstI GAGCTC 1 cut(s) 87
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 87
TasI AATT 2 cut(s) 156, 225
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.