Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001508

Physical Location & Seq

Genomic Coordinates Forward (+)

62169480 .. 62170126

Gene Structure 647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGTGTCGGCGTCGGTGGAGCTCTACGGAAGACGGCCTGCTTCCCCGACTTGCTTCCACACCTCGAGGTTCTTGGACCGAACAAGAACAACTGTTGAGACCCGTTCCCGGTTCGGCCTCCAAATTGCGAGGCTGCATGTGGGACTAGATAATCTTGCCTCAAGTTACTATGCACTGAGAGCTCTTATTGATTCATGTAAATCACCTGGTGATTTAGCAAGTGAGCATGCTATACGTATGGTTGCTTTATTTGACAATGAAGAGGTGGGTTCGGGATCCATTCAGGGTGCTGGTGCTCCAACTATGTTTCGAGCTATGAGACGCATAAGTAGTTGCTTAGCTGAAAAGTATGTTGGTGAATGTTCCTTTGAGTGTGCGGTACGCCAATCATTCCTTGTGTCTGTGCGACATGGCTCATGGAGTCCACCCAAATTTTATGGACAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

149

Amino Acids

16.42

Weight (kDa)

9.16

Isoelectric Point (pI)

63.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M18	PF02127	48 - 135	1.1e-13	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37020 AT4G37020
fragaria_vesca	FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950
malus_domestica	MD02G1301600.v1.1 MD02G1301800.v1.1 MD07G1022300.v1.1 MD17G1282900.v1.1
prunus_persica	Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1
pyrus_communis	pycom02g25340 pycom02g25350 pycom02g25400
rosa_chinensis	RchiOBHm_Chr2g0105351 RchiOBHm_Chr3g0472951
rosa_laevigata	RLG00000017419
rosa_multiflora	Rmu_co8381435.1_g000001 Rmu_sc0001407.1_g000022
rosa_roxburghii	Rroxscaffold_1G00022310 Rroxscaffold_2G00114060 Rroxscaffold_2G00126470 Rroxscaffold_2G00138270 Rroxscaffold_4G00312150 Rroxscaffold_4G00329030 Rroxscaffold_5G00344210 Rroxscaffold_5G00351740 Rroxscaffold_6G00388800 Rroxscaffold_6G00408610
rosa_rugosa	Rorug02G0127800 Rorug03G0292600
rosa_samantha	Rh1BG139100 Rh2AG178500 Rh2AG329700 Rh2BG186900 Rh2CG183000 Rh2DG184400 Rh3BG143700 Rh3BG208100 Rh3CG145000 Rh3DG145000 Rh3DG167900 Rh5DG241200 Rh5DG275600 Rh6DG097100 Rh6DG389000
rosa_wichuraiana	Rw2G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	64
AciI	CCGC	1 cut(s)	377
AclWI	GGATC	2 cut(s)	270, 283
AcsI	RAATTY	1 cut(s)	431
AcyI	GRCGYC	1 cut(s)	11
AdeI	CACNNNGTG	1 cut(s)	209
AfaI	GTAC	1 cut(s)	381
AfiI	CCNNNNNNNGG	1 cut(s)	108
AjnI	CCWGG	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
AluBI	AGCT	4 cut(s)	22, 182, 314, 341
AluI	AGCT	4 cut(s)	22, 182, 314, 341
Alw21I	GWGCWC	3 cut(s)	24, 184, 298
Alw26I	GTCTC	2 cut(s)	92, 313
AlwI	GGATC	2 cut(s)	270, 283
Ama87I	CYCGRG	1 cut(s)	64
AoxI	GGCC	2 cut(s)	35, 115
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	1 cut(s)	431
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	3 cut(s)	195, 221, 368
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	76
BamHI	GGATCC	1 cut(s)	275
BanII	GRGCYC	2 cut(s)	24, 184
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	3 cut(s)	24, 184, 298
BbvI	GCAGC	1 cut(s)	120
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	2 cut(s)	92, 313
BfaI	CTAG	1 cut(s)	146
BisI	GCNGC	1 cut(s)	134
BlpI	GCTNAGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	2 cut(s)	109, 207
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	2 cut(s)	109, 207
BpiI	GAAGAC	1 cut(s)	37
Bpu1102I	GCTNAGC	1 cut(s)	337
BpuEI	CTTGAG	1 cut(s)	145
BpuMI	CCSGG	1 cut(s)	109
BsaAI	YACGTR	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	120
BshFI	GGCC	2 cut(s)	37, 117
BsiHKAI	GWGCWC	3 cut(s)	24, 184, 298
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	92, 313
BsmBI	CGTCTC	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	2 cut(s)	37, 117
Bso31I	GGTCTC	1 cut(s)	92
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	3 cut(s)	24, 184, 298
Bsp143I	GATC	1 cut(s)	275
Bsp1720I	GCTNAGC	1 cut(s)	337
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	2 cut(s)	37, 117
BspCNI	CTCAG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	2 cut(s)	270, 283
BspTNI	GGTCTC	1 cut(s)	92
BssMI	GATC	1 cut(s)	275
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	39, 228
BstDEI	CTNAG	2 cut(s)	176, 337
BstKTI	GATC	1 cut(s)	278
BstMAI	GTCTC	2 cut(s)	92, 313
BstMBI	GATC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	207
BstNSI	RCATGY	2 cut(s)	140, 230
BstSCI	CCNGG	2 cut(s)	107, 205
BstSNI	TACGTA	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	37, 117
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	2 cut(s)	39, 228
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	1 cut(s)	330
CsiI	ACCWGGT	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	380
CviAII	CATG	6 cut(s)	137, 195, 227, 410, 417, 447
CviJI	RGCY	8 cut(s)	22, 37, 117, 133, 182, 314, 341, 414
CviKI_1	RGCY	8 cut(s)	22, 37, 117, 133, 182, 314, 341, 414
CviQI	GTAC	1 cut(s)	380
DdeI	CTNAG	2 cut(s)	176, 337
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
DraIII	CACNNNGTG	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Ecl136II	GAGCTC	2 cut(s)	22, 182
Eco105I	TACGTA	1 cut(s)	236
Eco24I	GRGCYC	2 cut(s)	24, 184
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	76
Eco53kI	GAGCTC	2 cut(s)	22, 182
Eco88I	CYCGRG	1 cut(s)	64
EcoICRI	GAGCTC	2 cut(s)	22, 182
EcoRII	CCWGG	1 cut(s)	205
EcoT38I	GRGCYC	2 cut(s)	24, 184
Esp3I	CGTCTC	1 cut(s)	313
FaeI	CATG	6 cut(s)	140, 198, 230, 413, 420, 450
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	6 cut(s)	136, 194, 226, 409, 416, 446
Fnu4HI	GCNGC	1 cut(s)	134
FriOI	GRGCYC	2 cut(s)	24, 184
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	37, 117
HapII	CCGG	1 cut(s)	109
HgaI	GACGC	1 cut(s)	330
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	6 cut(s)	140, 198, 230, 413, 420, 450
HinfI	GANTC	2 cut(s)	191, 421
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	3 cut(s)	195, 221, 368
Hpy166II	GTNNAC	1 cut(s)	425
Hpy188III	TCNNGA	1 cut(s)	273
Hpy8I	GTNNAC	1 cut(s)	425
Hpy99I	CGWCG	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	2 cut(s)	136, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	176, 337
HpySE526I	ACGT	1 cut(s)	235
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	6 cut(s)	140, 198, 230, 413, 420, 450
Kzo9I	GATC	1 cut(s)	275
LmnI	GCTCC	2 cut(s)	19, 301
LpnPI	CCDG	6 cut(s)	51, 122, 192, 219, 269, 276
Lsp1109I	GCAGC	1 cut(s)	120
MabI	ACCWGGT	1 cut(s)	205
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MboII	GAAGA	2 cut(s)	42, 272
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	3 cut(s)	24, 184, 298
MluCI	AATT	2 cut(s)	123, 431
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	6 cut(s)	60, 73, 123, 128, 169, 256
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	2 cut(s)	109, 207
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	179
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	1 cut(s)	275
NlaIII	CATG	6 cut(s)	140, 198, 230, 413, 420, 450
NlaIV	GGNNCC	1 cut(s)	277
NspI	RCATGY	2 cut(s)	140, 230
PaeI	GCATGC	1 cut(s)	230
PaeR7I	CTCGAG	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	135
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
Ppu21I	YACGTR	1 cut(s)	236
Psp124BI	GAGCTC	2 cut(s)	24, 184
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	76
PspXI	VCTCGAGB	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	275
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
SacI	GAGCTC	2 cut(s)	24, 184
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	1 cut(s)	275
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	2 cut(s)	109, 207
SduI	GDGCHC	3 cut(s)	24, 184, 298
SetI	ASST	9 cut(s)	24, 65, 71, 184, 208, 238, 267, 316, 343
SexAI	ACCWGGT	1 cut(s)	205
Sfr274I	CTCGAG	1 cut(s)	64
SinI	GGWCC	1 cut(s)	76
SlaI	CTCGAG	1 cut(s)	64
SmlI	CTYRAG	2 cut(s)	64, 160
SmoI	CTYRAG	2 cut(s)	64, 160
SnaBI	TACGTA	1 cut(s)	236
SphI	GCATGC	1 cut(s)	230
Sse9I	AATT	2 cut(s)	123, 431
SsiI	CCGC	1 cut(s)	377
SspMI	CTAG	1 cut(s)	146
SstI	GAGCTC	2 cut(s)	24, 184
StyD4I	CCNGG	2 cut(s)	107, 205
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	2 cut(s)	65, 310
TaqII	GACCGA	1 cut(s)	93
TasI	AATT	2 cut(s)	123, 431
TfiI	GAWTC	1 cut(s)	191
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	183, 273
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	431
XceI	RCATGY	2 cut(s)	140, 230
XhoI	CTCGAG	1 cut(s)	64
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.