Prupe.7G134300_v2.0.a1

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001508
Physical Location & Seq
Forward (+)
15227873 .. 15231029
3157 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G134300.1

Sequence Viewer

Length: 639 bp
ATGGCGGTGGATGCCATTGAAACCCCCTCTCCTCCCCTTCACCCCCCTTCTTCCCATTTCAGTCAACAACGCCACTTCTATCTCGCCGTTGACAGGCTCCAGTTCAAGATGGAGACATTGATGGACCTGTTTGGCGTGGCGGGTAGGCGTCCCTGCCTACCTATAGTGGTCTGCTGCAGCTCACGTGATGAGCTCGACGCGGTCAGCTCCGCCGTCGCCAACGTCCCCTATATCTCTTTAGCTTCTCTGTACACTGACCTTGCTGAAGCAGACCGTTCTTTGATATTAGAGCGCTTTCGGGAAGCAACAATGAGGTGGAACCCACAAGCCAGTGCTCAACCAGCGGATGACAATGAGCCTGTGAAAGATGAACAAAAATCTCATATGATAGTTGCAACAGATGCATGCCTTCCACTTCTTGCTTCCGGGGAGTCACCCATTTCTGCTCACGTTCTTATAAATTATGAGTTGCCTACAAAGAAGGAAACATATATGAGGCGGTTGACGACTTGTTTGGCTGCAGATGGGATTGTAATCAATATGGTTGTTGGGGGTGAGGTAGTTACTCTCAAAAGCATTGAAGAAAGTAGCAACCTGGTCATAGCTGAGATGCCCATAAATATTTCTGAGATTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 map03013 map03015 map03040
Pfam Domains
Protein Families
Helicase_C

Protein Analysis

213

Amino Acids

23.31

Weight (kDa)

4.84

Isoelectric Point (pI)

62.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 458
AccII CGCG 1 cut(s) 200
AciI CCGC 6 cut(s) 5, 140, 200, 210, 344, 499
AcuI CTGAAG 1 cut(s) 285
AcvI CACGTG 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 148
AfaI GTAC 1 cut(s) 251
AfeI AGCGCT 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 3 cut(s) 20, 106, 581
AjnI CCWGG 1 cut(s) 594
AluBI AGCT 5 cut(s) 180, 193, 207, 242, 605
AluI AGCT 5 cut(s) 180, 193, 207, 242, 605
Alw21I GWGCWC 2 cut(s) 195, 337
Alw26I GTCTC 1 cut(s) 107
Aor51HI AGCGCT 1 cut(s) 293
ApeKI GCWGC 3 cut(s) 174, 177, 518
ArsI GACNNNNNNTTYG 2 cut(s) 496, 528
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 124
AsuC2I CCSGG 1 cut(s) 427
AsuHPI GGTGA 3 cut(s) 32, 426, 566
AvaII GGWCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 195
BbrPI CACGTG 1 cut(s) 185
Bbv12I GWGCWC 2 cut(s) 195, 337
BbvI GCAGC 3 cut(s) 161, 189, 505
BccI CCATC 3 cut(s) 103, 115, 518
BceAI ACGGC 2 cut(s) 71, 197
BciT130I CCWGG 1 cut(s) 596
BcnI CCSGG 1 cut(s) 427
BcoDI GTCTC 1 cut(s) 107
BfmI CTRYAG 3 cut(s) 162, 175, 519
BfoI RGCGCY 1 cut(s) 295
BisI GCNGC 3 cut(s) 175, 178, 519
BlsI GCNGC 3 cut(s) 176, 179, 520
Bme1390I CCNGG 2 cut(s) 427, 596
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 2 cut(s) 98, 320
BmrFI CCNGG 2 cut(s) 427, 596
BmsI GCATC 2 cut(s) 391, 600
BpmI CTGGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 427
BsaAI YACGTR 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 533
BsaHI GRCGYC 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 426
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse1I ACTGG 2 cut(s) 100, 330
Bse8I GATNNNNATC 1 cut(s) 533
BseBI CCWGG 1 cut(s) 596
BseDI CCNNGG 1 cut(s) 426
BseGI GGATG 2 cut(s) 16, 352
BseJI GATNNNNATC 1 cut(s) 533
BseLI CCNNNNNNNGG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 597, 618
BseNI ACTGG 2 cut(s) 100, 330
BseRI GAGGAG 1 cut(s) 21
BseXI GCAGC 3 cut(s) 161, 189, 505
Bsh1236I CGCG 1 cut(s) 200
BsiHKAI GWGCWC 2 cut(s) 195, 337
BsiSI CCGG 1 cut(s) 426
BslFI GGGAC 2 cut(s) 135, 209
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 2 cut(s) 135, 209
Bsp1286I GDGCHC 2 cut(s) 195, 337
Bsp1407I TGTACA 1 cut(s) 249
BspACI CCGC 6 cut(s) 5, 140, 200, 210, 344, 499
BspCNI CTCAG 2 cut(s) 598, 619
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 2 cut(s) 98, 320
BspMAI CTGCAG 2 cut(s) 179, 523
BsrGI TGTACA 1 cut(s) 249
BsrI ACTGG 2 cut(s) 100, 330
BssECI CCNNGG 1 cut(s) 426
BssNI GRCGYC 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 596
Bst4CI ACNGT 1 cut(s) 275
BstACI GRCGYC 1 cut(s) 148
BstAPI GCANNNNNTGC 1 cut(s) 401
BstAUI TGTACA 1 cut(s) 249
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 2 cut(s) 606, 627
BstF5I GGATG 2 cut(s) 16, 352
BstFNI CGCG 1 cut(s) 200
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 107
BstMWI GCNNNNNNNGC 3 cut(s) 11, 341, 401
BstNI CCWGG 1 cut(s) 596
BstNSI RCATGY 1 cut(s) 408
BstSCI CCNGG 2 cut(s) 425, 594
BstSFI CTRYAG 3 cut(s) 162, 175, 519
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 3 cut(s) 161, 189, 505
BtsCI GGATG 2 cut(s) 16, 352
BtsIMutI CAGTG 2 cut(s) 252, 337
Cac8I GCNNGC 1 cut(s) 406
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 124
CseI GACGC 2 cut(s) 137, 206
CsiI ACCWGGT 1 cut(s) 594
Csp6I GTAC 1 cut(s) 250
CviAII CATG 1 cut(s) 405
CviJI RGCY 9 cut(s) 97, 180, 193, 207, 242, 329, 358, 518, 605
CviKI_1 RGCY 9 cut(s) 97, 180, 193, 207, 242, 329, 358, 518, 605
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 2 cut(s) 606, 627
EciI GGCGGA 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 124
Eco47III AGCGCT 1 cut(s) 293
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 285
Eco72I CACGTG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 594
EcoT22I ATGCAT 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 195
FaeI CATG 1 cut(s) 408
FaqI GGGAC 2 cut(s) 135, 209
FatI CATG 1 cut(s) 404
FauI CCCGC 1 cut(s) 133
FauNDI CATATG 1 cut(s) 384
Fnu4HI GCNGC 3 cut(s) 175, 178, 519
FokI GGATG 2 cut(s) 23, 359
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 3 cut(s) 175, 178, 519
GlaI GCGC 1 cut(s) 293
GluI GCNGC 3 cut(s) 175, 178, 519
GsuI CTGGAG 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 295
HapII CCGG 1 cut(s) 426
HgaI GACGC 2 cut(s) 137, 206
HhaI GCGC 1 cut(s) 294
Hin1I GRCGYC 1 cut(s) 148
Hin1II CATG 1 cut(s) 408
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HincII GTYRAC 3 cut(s) 65, 91, 504
HindII GTYRAC 3 cut(s) 65, 91, 504
HinfI GANTC 1 cut(s) 431
HpaII CCGG 1 cut(s) 426
HphI GGTGA 3 cut(s) 32, 426, 566
Hpy166II GTNNAC 4 cut(s) 65, 91, 252, 504
Hpy188I TCNGA 1 cut(s) 628
Hpy188III TCNNGA 2 cut(s) 106, 299
Hpy8I GTNNAC 4 cut(s) 65, 91, 252, 504
Hpy99I CGWCG 2 cut(s) 200, 218
HpyAV CCTTC 4 cut(s) 47, 57, 419, 475
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 3 cut(s) 184, 222, 450
HpyCH4V TGCA 4 cut(s) 177, 395, 404, 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 341, 401
HpyF3I CTNAG 2 cut(s) 606, 627
HpySE526I ACGT 3 cut(s) 184, 222, 450
Hsp92I GRCGYC 1 cut(s) 148
Hsp92II CATG 1 cut(s) 408
HspAI GCGC 1 cut(s) 292
LmnI GCTCC 2 cut(s) 102, 212
Lsp1109I GCAGC 3 cut(s) 161, 189, 505
LweI GCATC 2 cut(s) 391, 600
MabI ACCWGGT 1 cut(s) 594
MaeII ACGT 3 cut(s) 184, 222, 450
MaeIII GTNAC 2 cut(s) 432, 562
MboII GAAGA 2 cut(s) 42, 593
MhlI GDGCHC 2 cut(s) 195, 337
MluCI AATT 1 cut(s) 460
MlyI GAGTC 1 cut(s) 440
MnlI CCTC 5 cut(s) 37, 42, 306, 489, 550
Mph1103I ATGCAT 1 cut(s) 406
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 1 cut(s) 426
MspR9I CCNGG 2 cut(s) 427, 596
MvaI CCWGG 1 cut(s) 596
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 3 cut(s) 11, 341, 401
NciI CCSGG 1 cut(s) 427
NdeI CATATG 1 cut(s) 384
NlaIII CATG 1 cut(s) 408
NlaIV GGNNCC 2 cut(s) 98, 320
NmuCI GTSAC 1 cut(s) 432
NsiI ATGCAT 1 cut(s) 406
NspI RCATGY 1 cut(s) 408
PaeI GCATGC 1 cut(s) 408
PflFI GACNNNGTC 1 cut(s) 200
PkrI GCNGC 3 cut(s) 176, 179, 520
PleI GAGTC 1 cut(s) 439
PmaCI CACGTG 1 cut(s) 185
PmlI CACGTG 1 cut(s) 185
PpsI GAGTC 1 cut(s) 439
Ppu21I YACGTR 1 cut(s) 185
PsiI TTATAA 1 cut(s) 458
Psp124BI GAGCTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 594
PspCI CACGTG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 594
PspN4I GGNNCC 2 cut(s) 98, 320
PspPI GGNCC 1 cut(s) 124
PstI CTGCAG 2 cut(s) 179, 523
PsyI GACNNNGTC 1 cut(s) 200
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SacI GAGCTC 1 cut(s) 195
SatI GCNGC 3 cut(s) 175, 178, 519
Sau96I GGNCC 1 cut(s) 124
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 2 cut(s) 427, 596
SduI GDGCHC 2 cut(s) 195, 337
SexAI ACCWGGT 1 cut(s) 594
SfaNI GCATC 2 cut(s) 391, 600
SfcI CTRYAG 3 cut(s) 162, 175, 519
SinI GGWCC 1 cut(s) 124
SphI GCATGC 1 cut(s) 408
Sse9I AATT 1 cut(s) 460
SsiI CCGC 6 cut(s) 5, 140, 200, 210, 344, 499
SspI AATATT 1 cut(s) 622
SstI GAGCTC 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 425, 594
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 3 cut(s) 187, 225, 453
TaqI TCGA 1 cut(s) 195
TasI AATT 1 cut(s) 460
TatI WGTACW 1 cut(s) 249
TscAI CASTG 2 cut(s) 259, 337
TseFI GTSAC 1 cut(s) 432
TseI GCWGC 3 cut(s) 174, 177, 518
Tsp45I GTSAC 1 cut(s) 432
TspDTI ATGAA 1 cut(s) 384
TspRI CASTG 2 cut(s) 259, 337
Tth111I GACNNNGTC 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 124
XceI RCATGY 1 cut(s) 408
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.