Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001508

Physical Location & Seq

Genomic Coordinates Forward (+)

2025677 .. 2028461

Gene Structure 2785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00388800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGTGGTTGACCGGCGGCGCGTGGGTCCCGAGCACGGCGGCTTGTGGCGGCGCGTGAGGGCGCGTCCGGCTGTTCCCGGATTTAATCTTATTGAAGCAGTTGAAGATTGTGAAGATGGTGATGCTGATCCACGAATAGACTTGGAAGTAGAAGCAGTTGAAGAGGACGGGAGCTTTAAAATTGATGCCAACAACTACGACATCTATGGACCTCTCTTCGAGAAAGCACTAGATAATCTTGCCTCAAGTTACCGTGCACCGAGAGCTCTTATTGATTCATGTAAATCACCTGGTGATTTAGCAAGTGAGCATGCTATACGTATGGTTGCTTTATTTGACAATGAAGAAGTGGGTTCGGGATCCATTCGTGGTGCCGGTGCTCCAACTATGTTTCGAGGCTATGAGACGCATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

138

Amino Acids

15.18

Weight (kDa)

4.79

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M18	PF02127	72 - 126	2.9e-10	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37020 AT4G37020
fragaria_vesca	FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950
malus_domestica	MD02G1301600.v1.1 MD02G1301800.v1.1 MD07G1022300.v1.1 MD17G1282900.v1.1
prunus_persica	Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1
pyrus_communis	pycom02g25340 pycom02g25350 pycom02g25400
rosa_chinensis	RchiOBHm_Chr2g0105351 RchiOBHm_Chr3g0472951
rosa_laevigata	RLG00000017419
rosa_multiflora	Rmu_co8381435.1_g000001 Rmu_sc0001407.1_g000022
rosa_roxburghii	Rroxscaffold_1G00022310 Rroxscaffold_2G00114060 Rroxscaffold_2G00126470 Rroxscaffold_2G00138270 Rroxscaffold_4G00312150 Rroxscaffold_4G00329030 Rroxscaffold_5G00344210 Rroxscaffold_5G00351740 Rroxscaffold_6G00388800 Rroxscaffold_6G00408610
rosa_rugosa	Rorug02G0127800 Rorug03G0292600
rosa_samantha	Rh1BG139100 Rh2AG178500 Rh2AG329700 Rh2BG186900 Rh2CG183000 Rh2DG184400 Rh3BG143700 Rh3BG208100 Rh3CG145000 Rh3DG145000 Rh3DG167900 Rh5DG241200 Rh5DG275600 Rh6DG097100 Rh6DG389000
rosa_wichuraiana	Rw2G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	371
AccII	CGCG	3 cut(s)	21, 54, 64
AciI	CCGC	3 cut(s)	16, 39, 49
AclWI	GGATC	3 cut(s)	122, 354, 367
AdeI	CACNNNGTG	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	3 cut(s)	95, 104, 161
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	2 cut(s)	174, 266
AluI	AGCT	2 cut(s)	174, 266
Alw21I	GWGCWC	4 cut(s)	36, 259, 268, 382
Alw26I	GTCTC	1 cut(s)	398
Alw44I	GTGCAC	1 cut(s)	255
AlwI	GGATC	3 cut(s)	122, 354, 367
Ama87I	CYCGRG	1 cut(s)	29
ApaLI	GTGCAC	1 cut(s)	255
AspLEI	GCGC	3 cut(s)	21, 54, 64
AspS9I	GGNCC	2 cut(s)	26, 209
AsuC2I	CCSGG	1 cut(s)	78
AsuHPI	GGTGA	3 cut(s)	131, 279, 305
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	2 cut(s)	26, 209
BaeGI	GKGCMC	1 cut(s)	259
BamHI	GGATCC	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	268
Bbv12I	GWGCWC	4 cut(s)	36, 259, 268, 382
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	291
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	1 cut(s)	230
BisI	GCNGC	3 cut(s)	17, 40, 50
BlsI	GCNGC	3 cut(s)	18, 41, 51
Bme1390I	CCNGG	2 cut(s)	78, 291
Bme18I	GGWCC	2 cut(s)	26, 209
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	26, 209
BmiI	GGNNCC	4 cut(s)	27, 28, 361, 373
BmrFI	CCNGG	2 cut(s)	78, 291
BmsI	GCATC	2 cut(s)	112, 175
BpuEI	CTTGAG	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	78
BsaAI	YACGTR	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse118I	RCCGGY	2 cut(s)	12, 374
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	291
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	259
Bsh1236I	CGCG	3 cut(s)	21, 54, 64
BshNI	GGYRCC	1 cut(s)	371
BsiHKAI	GWGCWC	4 cut(s)	36, 259, 268, 382
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	4 cut(s)	13, 68, 78, 375
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	398
BsmBI	CGTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	12
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	4 cut(s)	36, 259, 268, 382
Bsp143I	GATC	2 cut(s)	127, 359
BspACI	CCGC	3 cut(s)	16, 39, 49
BspFNI	CGCG	3 cut(s)	21, 54, 64
BspLI	GGNNCC	4 cut(s)	27, 28, 361, 373
BspPI	GGATC	3 cut(s)	122, 354, 367
BspT107I	GGYRCC	1 cut(s)	371
BsrFI	RCCGGY	2 cut(s)	12, 374
BssAI	RCCGGY	2 cut(s)	12, 374
BssMI	GATC	2 cut(s)	127, 359
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	2 cut(s)	156, 221
BstBAI	YACGTR	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	312
BstFNI	CGCG	3 cut(s)	21, 54, 64
BstHHI	GCGC	3 cut(s)	21, 54, 64
BstKTI	GATC	2 cut(s)	130, 362
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	2 cut(s)	127, 359
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 263
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	76, 289
BstSLI	GKGCMC	1 cut(s)	259
BstSNI	TACGTA	1 cut(s)	320
BstUI	CGCG	3 cut(s)	21, 54, 64
BstX2I	RGATCY	1 cut(s)	359
BstYI	RGATCY	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	312
CfoI	GCGC	3 cut(s)	21, 54, 64
Cfr10I	RCCGGY	2 cut(s)	12, 374
Cfr13I	GGNCC	2 cut(s)	26, 209
CseI	GACGC	1 cut(s)	53
CsiI	ACCWGGT	1 cut(s)	289
CviAII	CATG	2 cut(s)	279, 311
CviJI	RGCY	5 cut(s)	42, 71, 174, 266, 399
CviKI_1	RGCY	5 cut(s)	42, 71, 174, 266, 399
DpnI	GATC	2 cut(s)	129, 361
DpnII	GATC	2 cut(s)	127, 359
DraI	TTTAAA	1 cut(s)	178
DraIII	CACNNNGTG	1 cut(s)	293
Eam1104I	CTCTTC	2 cut(s)	156, 221
EarI	CTCTTC	2 cut(s)	156, 221
Ecl136II	GAGCTC	1 cut(s)	266
Eco105I	TACGTA	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	26, 209
Eco53kI	GAGCTC	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	29
EcoICRI	GAGCTC	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	398
FaeI	CATG	2 cut(s)	282, 314
FaiI	YATR	8 cut(s)	207, 280, 312, 317, 323, 389, 402, 411
FaqI	GGGAC	1 cut(s)	12
FatI	CATG	2 cut(s)	278, 310
Fnu4HI	GCNGC	3 cut(s)	17, 40, 50
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	3 cut(s)	17, 40, 50
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	3 cut(s)	20, 53, 63
GluI	GCNGC	3 cut(s)	17, 40, 50
HapII	CCGG	4 cut(s)	13, 68, 78, 375
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	3 cut(s)	21, 54, 64
Hin1II	CATG	2 cut(s)	282, 314
Hin6I	GCGC	3 cut(s)	19, 52, 62
HinP1I	GCGC	3 cut(s)	19, 52, 62
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	4 cut(s)	13, 68, 78, 375
HphI	GGTGA	3 cut(s)	131, 279, 305
Hpy166II	GTNNAC	2 cut(s)	10, 257
Hpy188III	TCNNGA	3 cut(s)	29, 220, 357
Hpy8I	GTNNAC	2 cut(s)	10, 257
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 263
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	2 cut(s)	282, 314
HspAI	GCGC	3 cut(s)	19, 52, 62
KflI	GGGWCCC	1 cut(s)	26
Kzo9I	GATC	2 cut(s)	127, 359
LmnI	GCTCC	2 cut(s)	171, 385
LpnPI	CCDG	6 cut(s)	26, 81, 91, 276, 303, 388
LweI	GCATC	2 cut(s)	112, 175
MabI	ACCWGGT	1 cut(s)	289
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	2 cut(s)	129, 361
MboI	GATC	2 cut(s)	127, 359
MboII	GAAGA	5 cut(s)	116, 125, 173, 208, 356
MflI	RGATCY	1 cut(s)	359
MhlI	GDGCHC	4 cut(s)	36, 259, 268, 382
MluCI	AATT	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	407
MnlI	CCTC	5 cut(s)	51, 157, 222, 253, 389
MseI	TTAA	2 cut(s)	84, 177
MspI	CCGG	4 cut(s)	13, 68, 78, 375
MspR9I	CCNGG	2 cut(s)	78, 291
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	3 cut(s)	21, 54, 64
MwoI	GCNNNNNNNGC	2 cut(s)	68, 263
NciI	CCSGG	1 cut(s)	78
NdeII	GATC	2 cut(s)	127, 359
NlaIII	CATG	2 cut(s)	282, 314
NlaIV	GGNNCC	4 cut(s)	27, 28, 361, 373
NspI	RCATGY	1 cut(s)	314
PaeI	GCATGC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	275
PfoI	TCCNGGA	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	18, 41, 51
Ppu21I	YACGTR	1 cut(s)	320
PpuMI	RGGWCCY	1 cut(s)	26
Psp124BI	GAGCTC	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	4 cut(s)	27, 28, 361, 373
PspPI	GGNCC	2 cut(s)	26, 209
PspPPI	RGGWCCY	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	359
SacI	GAGCTC	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	84, 177
SatI	GCNGC	3 cut(s)	17, 40, 50
Sau3AI	GATC	2 cut(s)	127, 359
Sau96I	GGNCC	2 cut(s)	26, 209
ScrFI	CCNGG	2 cut(s)	78, 291
SduI	GDGCHC	4 cut(s)	36, 259, 268, 382
SetI	ASST	5 cut(s)	176, 214, 268, 292, 322
SexAI	ACCWGGT	1 cut(s)	289
SfaNI	GCATC	2 cut(s)	112, 175
SinI	GGWCC	2 cut(s)	26, 209
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
SnaBI	TACGTA	1 cut(s)	320
SphI	GCATGC	1 cut(s)	314
Sse9I	AATT	1 cut(s)	180
SsiI	CCGC	3 cut(s)	16, 39, 49
SspMI	CTAG	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	268
StyD4I	CCNGG	2 cut(s)	76, 289
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	2 cut(s)	219, 394
TasI	AATT	1 cut(s)	180
TauI	GCSGC	3 cut(s)	19, 42, 52
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	2 cut(s)	84, 177
Tru9I	TTAA	2 cut(s)	84, 177
TspDTI	ATGAA	2 cut(s)	267, 357
VneI	GTGCAC	1 cut(s)	255
VpaK11BI	GGWCC	2 cut(s)	26, 209
XceI	RCATGY	1 cut(s)	314
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.