Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001508

Physical Location & Seq

Genomic Coordinates Reverse (-)

27550972 .. 27558326

Gene Structure 7355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00022310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCCGGACGGCGGCGAATCGAAGGGGAGAAGAAACCACACGAAGAGGAAAAGGGAGAGATCGGGGAGAGGAGAGAGAAAGGTGGGTTTCCGGATTTGGAAACCTACCACAAAATTGAGGAATTGAGTATTGTAATATTGAGTGTTGTGAGGCGTGTTACTCGATGGGATTATTTAAAGCAGTTGAAGAGGACGGGAGCTTTAAAATTAATGCCAACAACTACGACATCTATGGACCTCTCTTCGAGAAAGCGTATCGGGAATTGGAAAGCTGTAACGGAGTTCATTATCCAACATCCCGAGGCGAAGAGCGCTACATCCATCGGGGGCACCACAATTCTTCAAAACGCAATCACCGCCAAAGAGGTGAAAATTGTAAAAGAATTGGTGCTATTAATGAGAGGAAAAGAAGAGGTTGAAAGCCCGAGTAGGAAACTGCCGGCGCGTTTGAATCGGTTATGGAGGTGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 DUF4219 PGG

Protein Analysis

157

Amino Acids

18.12

Weight (kDa)

10.12

Isoelectric Point (pI)

66.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37020 AT4G37020
fragaria_vesca	FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950
malus_domestica	MD02G1301600.v1.1 MD02G1301800.v1.1 MD07G1022300.v1.1 MD17G1282900.v1.1
prunus_persica	Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1
pyrus_communis	pycom02g25340 pycom02g25350 pycom02g25400
rosa_chinensis	RchiOBHm_Chr2g0105351 RchiOBHm_Chr3g0472951
rosa_laevigata	RLG00000017419
rosa_multiflora	Rmu_co8381435.1_g000001 Rmu_sc0001407.1_g000022
rosa_roxburghii	Rroxscaffold_1G00022310 Rroxscaffold_2G00114060 Rroxscaffold_2G00126470 Rroxscaffold_2G00138270 Rroxscaffold_4G00312150 Rroxscaffold_4G00329030 Rroxscaffold_5G00344210 Rroxscaffold_5G00351740 Rroxscaffold_6G00388800 Rroxscaffold_6G00408610
rosa_rugosa	Rorug02G0127800 Rorug03G0292600
rosa_samantha	Rh1BG139100 Rh2AG178500 Rh2AG329700 Rh2BG186900 Rh2CG183000 Rh2DG184400 Rh3BG143700 Rh3BG208100 Rh3CG145000 Rh3DG145000 Rh3DG167900 Rh5DG241200 Rh5DG275600 Rh6DG097100 Rh6DG389000
rosa_wichuraiana	Rw2G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	329
AccII	CGCG	1 cut(s)	445
AccIII	TCCGGA	1 cut(s)	91
AciI	CCGC	2 cut(s)	13, 357
AcoI	YGGCCR	1 cut(s)	3
AfeI	AGCGCT	1 cut(s)	313
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	4 cut(s)	187, 344, 419, 451
AluBI	AGCT	2 cut(s)	200, 272
AluI	AGCT	2 cut(s)	200, 272
Ama87I	CYCGRG	2 cut(s)	299, 424
Aor13HI	TCCGGA	1 cut(s)	91
Aor51HI	AGCGCT	1 cut(s)	313
AoxI	GGCC	1 cut(s)	3
AseI	ATTAAT	2 cut(s)	209, 395
AspLEI	GCGC	2 cut(s)	314, 445
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	2 cut(s)	346, 379
AvaI	CYCGRG	2 cut(s)	299, 424
AvaII	GGWCC	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	329
BccI	CCATC	2 cut(s)	159, 329
BceAI	ACGGC	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	315
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	235
BmeT110I	CYCGRG	2 cut(s)	299, 424
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse118I	RCCGGY	1 cut(s)	439
BseAI	TCCGGA	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	2 cut(s)	295, 317
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseRI	GAGGAG	1 cut(s)	85
BseSI	GKGCMC	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	445
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	329
BsiHKCI	CYCGRG	2 cut(s)	299, 424
BsiSI	CCGG	3 cut(s)	6, 92, 440
BslI	CCNNNNNNNGG	1 cut(s)	12
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	2 cut(s)	299, 424
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	2 cut(s)	13, 357
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	331
BspQI	GCTCTTC	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	439
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	1 cut(s)	60
Bst6I	CTCTTC	5 cut(s)	39, 182, 247, 302, 405
BstC8I	GCNNGC	1 cut(s)	441
BstF5I	GGATG	2 cut(s)	295, 317
BstFNI	CGCG	1 cut(s)	445
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	2 cut(s)	314, 445
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 356
BstSLI	GKGCMC	1 cut(s)	332
BstUI	CGCG	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	295, 317
Cac8I	GCNNGC	1 cut(s)	441
CfoI	GCGC	2 cut(s)	314, 445
Cfr10I	RCCGGY	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	235
CviJI	RGCY	4 cut(s)	5, 200, 272, 423
CviKI_1	RGCY	4 cut(s)	5, 200, 272, 423
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
DraI	TTTAAA	2 cut(s)	177, 204
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	5 cut(s)	39, 182, 247, 302, 405
EarI	CTCTTC	5 cut(s)	39, 182, 247, 302, 405
Eco47I	GGWCC	1 cut(s)	235
Eco47III	AGCGCT	1 cut(s)	313
Eco88I	CYCGRG	2 cut(s)	299, 424
FaiI	YATR	2 cut(s)	233, 460
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	2 cut(s)	282, 304
Fsp4HI	GCNGC	1 cut(s)	14
GlaI	GCGC	2 cut(s)	313, 444
GluI	GCNGC	1 cut(s)	14
HaeII	RGCGCY	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	6, 92, 440
HhaI	GCGC	2 cut(s)	314, 445
Hin6I	GCGC	2 cut(s)	312, 443
HinP1I	GCGC	2 cut(s)	312, 443
HinfI	GANTC	2 cut(s)	18, 451
HpaII	CCGG	3 cut(s)	6, 92, 440
HphI	GGTGA	2 cut(s)	346, 379
Hpy188III	TCNNGA	4 cut(s)	92, 246, 259, 299
HpyAV	CCTTC	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 356
HspAI	GCGC	2 cut(s)	312, 443
Kpn2I	TCCGGA	1 cut(s)	91
KroI	GCCGGC	1 cut(s)	439
KroNI	GCCGGC	1 cut(s)	441
Kzo9I	GATC	1 cut(s)	60
LguI	GCTCTTC	1 cut(s)	302
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	3 cut(s)	19, 105, 453
MaeIII	GTNAC	2 cut(s)	157, 274
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	7 cut(s)	43, 56, 199, 234, 319, 332, 422
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	7 cut(s)	114, 122, 206, 262, 336, 372, 383
MmeI	TCCRAC	1 cut(s)	316
MroI	TCCGGA	1 cut(s)	91
MroNI	GCCGGC	1 cut(s)	439
MseI	TTAA	4 cut(s)	176, 203, 209, 395
MspI	CCGG	3 cut(s)	6, 92, 440
MvnI	CGCG	1 cut(s)	445
MwoI	GCNNNNNNNGC	2 cut(s)	311, 356
NaeI	GCCGGC	1 cut(s)	441
NdeII	GATC	1 cut(s)	60
NgoMIV	GCCGGC	1 cut(s)	439
NlaIV	GGNNCC	1 cut(s)	331
PciSI	GCTCTTC	1 cut(s)	302
PdiI	GCCGGC	1 cut(s)	441
PfeI	GAWTC	2 cut(s)	18, 451
PkrI	GCNGC	1 cut(s)	15
PshBI	ATTAAT	2 cut(s)	209, 395
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	235
SapI	GCTCTTC	1 cut(s)	302
SaqAI	TTAA	4 cut(s)	176, 203, 209, 395
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	235
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	8 cut(s)	85, 107, 202, 240, 274, 369, 417, 467
SinI	GGWCC	1 cut(s)	235
Sse9I	AATT	7 cut(s)	114, 122, 206, 262, 336, 372, 383
SsiI	CCGC	2 cut(s)	13, 357
SspI	AATATT	1 cut(s)	138
TaqI	TCGA	3 cut(s)	21, 163, 245
TasI	AATT	7 cut(s)	114, 122, 206, 262, 336, 372, 383
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	2 cut(s)	18, 451
Tru1I	TTAA	4 cut(s)	176, 203, 209, 395
Tru9I	TTAA	4 cut(s)	176, 203, 209, 395
TspDTI	ATGAA	1 cut(s)	274
TspGWI	ACGGA	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	235
VspI	ATTAAT	2 cut(s)	209, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.