Rmu_co8381435.1_g000001

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8381435.1
OG0001508
Physical Location & Seq
Reverse (-)
419 .. 721
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8381435.1_g000001.1.cds

Sequence Viewer

Length: 303 bp
atgtctttgattattacagtctgcaaatcatatcttgtatcacagtacactgacctagctgaagcagaccgtgctgcaatattagagtccttcaagcaagcaaccatcaggtggaacccagaagttggtgctcaatcagctgatgacagtgagcctgtgaaagaagaacaaaaatctcatatgatagttgctacagatgcatgcattccgcttcttgcttctggggagtcacctatttctgctcgtgttcttataaactatgagttacctgcaaagaaggtccggttctatttcttcccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 map03013 map03015 map03040
Pfam Domains
Protein Families
Helicase_C

Protein Analysis

100

Amino Acids

11.12

Weight (kDa)

5.04

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 277
AccB7I CCANNNNNTGG 2 cut(s) 111, 125
AciI CCGC 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 2 cut(s) 111, 125
AgsI TTSAA 1 cut(s) 94
AluBI AGCT 2 cut(s) 59, 140
AluI AGCT 2 cut(s) 59, 140
Alw21I GWGCWC 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 280
AsuHPI GGTGA 1 cut(s) 222
AvaII GGWCC 1 cut(s) 280
BauI CACGAG 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 113
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 277
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 116
BmsI GCATC 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 282
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 125
BseLI CCNNNNNNNGG 2 cut(s) 111, 125
BseXI GCAGC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 1 cut(s) 283
BslI CCNNNNNNNGG 2 cut(s) 111, 125
BsmI GAATGC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 133
BspACI CCGC 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 116
BspMI ACCTGC 1 cut(s) 277
BssSI CACGAG 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 243
Bst4CI ACNGT 4 cut(s) 19, 45, 71, 149
BstAPI GCANNNNNTGC 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 99, 202
BstDEI CTNAG 1 cut(s) 300
BstMWI GCNNNNNNNGC 3 cut(s) 71, 137, 197
BstNSI RCATGY 1 cut(s) 204
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 61
BtsIMutI CAGTG 2 cut(s) 48, 154
BveI ACCTGC 1 cut(s) 277
Cac8I GCNNGC 2 cut(s) 99, 202
Cfr13I GGNCC 1 cut(s) 280
Csp6I GTAC 1 cut(s) 46
CviAII CATG 1 cut(s) 201
CviJI RGCY 3 cut(s) 59, 140, 154
CviKI_1 RGCY 3 cut(s) 59, 140, 154
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 81
EcoT22I ATGCAT 2 cut(s) 202, 206
FaeI CATG 1 cut(s) 204
FaiI YATR 6 cut(s) 31, 180, 182, 202, 254, 261
FatI CATG 1 cut(s) 200
FauNDI CATATG 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 56
GluI GCNGC 1 cut(s) 75
HapII CCGG 1 cut(s) 283
Hin1II CATG 1 cut(s) 204
HinfI GANTC 2 cut(s) 86, 227
HpaII CCGG 1 cut(s) 283
HphI GGTGA 1 cut(s) 222
Hpy166II GTNNAC 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 2 cut(s) 100, 271
HpyCH4III ACNGT 4 cut(s) 19, 45, 71, 149
HpyCH4V TGCA 5 cut(s) 24, 77, 200, 204, 272
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 137, 197
HpyF3I CTNAG 1 cut(s) 300
Hsp92II CATG 1 cut(s) 204
LpnPI CCDG 6 cut(s) 94, 132, 168, 207, 282, 296
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 187
MaeI CTAG 1 cut(s) 56
MaeIII GTNAC 2 cut(s) 228, 264
MboII GAAGA 2 cut(s) 176, 286
MhlI GDGCHC 1 cut(s) 133
MlyI GAGTC 2 cut(s) 95, 236
Mph1103I ATGCAT 2 cut(s) 202, 206
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 283
Mva1269I GAATGC 1 cut(s) 204
MwoI GCNNNNNNNGC 3 cut(s) 71, 137, 197
NdeI CATATG 1 cut(s) 180
NlaIII CATG 1 cut(s) 204
NlaIV GGNNCC 1 cut(s) 116
NmuCI GTSAC 1 cut(s) 228
NsiI ATGCAT 2 cut(s) 202, 206
NspI RCATGY 1 cut(s) 204
PaeI GCATGC 1 cut(s) 204
PctI GAATGC 1 cut(s) 204
PflMI CCANNNNNTGG 2 cut(s) 111, 125
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 2 cut(s) 94, 235
PpsI GAGTC 2 cut(s) 94, 235
PsiI TTATAA 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SatI GCNGC 1 cut(s) 75
Sau96I GGNCC 1 cut(s) 280
SchI GAGTC 2 cut(s) 95, 236
SduI GDGCHC 1 cut(s) 133
SetI ASST 7 cut(s) 57, 61, 113, 142, 235, 271, 282
SfaNI GCATC 1 cut(s) 187
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 1 cut(s) 280
SphI GCATGC 1 cut(s) 204
SsiI CCGC 1 cut(s) 209
SspI AATATT 1 cut(s) 81
SspMI CTAG 1 cut(s) 56
TaaI ACNGT 4 cut(s) 19, 45, 71, 149
TatI WGTACW 1 cut(s) 45
TscAI CASTG 2 cut(s) 55, 154
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 228
TspRI CASTG 2 cut(s) 55, 154
Van91I CCANNNNNTGG 2 cut(s) 111, 125
VpaK11BI GGWCC 1 cut(s) 280
XceI RCATGY 1 cut(s) 204
XspI CTAG 1 cut(s) 56
Zsp2I ATGCAT 2 cut(s) 202, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.