Rroxscaffold_4G00312150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001508
Physical Location & Seq
Reverse (-)
34910371 .. 34925402
15032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00312150.1

Sequence Viewer

Length: 372 bp
ATGGCAGGCTTAACAATAGCGATATCACCACGTTCATTCCAGCCACTATCGGCGGCATGCCAAAATAATTATTACTATTGCCATATGCAAAAAGAAGCCGACATAGCCAAGGCTATCCCAGCAGGCACCAACTGTACCAAGAAAAGCACATTATGTGCCTTCGTCAAAGAAACAGACGAAGAGGGAATCAAGCAATTACAAATCACAGCTCAATCAGCATTTAGTATCATCAATTTCAAAGTGAATGACACAAAGATGATCGAGGCCTCGAGGGCGTTGAAATATGAGGTTGAACAATATGACCAAGGTAAACCGAAGTATGAACAAGAAAAACATAGCCTCCCATCCTGGAATGAAAGAAAACTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.94

Weight (kDa)

7.63

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 268
AccB1I GGYRCC 1 cut(s) 125
AciI CCGC 1 cut(s) 53
AfaI GTAC 1 cut(s) 136
AgsI TTSAA 3 cut(s) 238, 280, 293
AjnI CCWGG 1 cut(s) 347
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Ama87I CYCGRG 2 cut(s) 268, 365
AoxI GGCC 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 18
AvaI CYCGRG 2 cut(s) 268, 365
BanI GGYRCC 1 cut(s) 125
BccI CCATC 1 cut(s) 352
BciT130I CCWGG 1 cut(s) 349
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 349
BmeT110I CYCGRG 2 cut(s) 268, 365
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 349
BsaJI CCNNGG 2 cut(s) 108, 304
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
BseBI CCWGG 1 cut(s) 349
BseDI CCNNGG 2 cut(s) 108, 304
BseGI GGATG 1 cut(s) 344
BseYI CCCAGC 1 cut(s) 118
BshFI GGCC 1 cut(s) 266
BshNI GGYRCC 1 cut(s) 125
BsiHKCI CYCGRG 2 cut(s) 268, 365
BsnI GGCC 1 cut(s) 266
BsoBI CYCGRG 2 cut(s) 268, 365
Bsp143I GATC 1 cut(s) 258
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 108, 304
BssMI GATC 1 cut(s) 258
BssT1I CCWWGG 2 cut(s) 108, 304
Bst2UI CCWGG 1 cut(s) 349
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 3 cut(s) 7, 58, 124
BstF5I GGATG 1 cut(s) 344
BstKTI GATC 1 cut(s) 261
BstMBI GATC 1 cut(s) 258
BstMWI GCNNNNNNNGC 4 cut(s) 104, 119, 215, 272
BstNI CCWGG 1 cut(s) 349
BstNSI RCATGY 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 347
BsuRI GGCC 1 cut(s) 266
BtsCI GGATG 1 cut(s) 344
Cac8I GCNNGC 3 cut(s) 7, 58, 124
Csp6I GTAC 1 cut(s) 135
CviAII CATG 1 cut(s) 57
CviJI RGCY 8 cut(s) 9, 43, 98, 107, 113, 209, 266, 339
CviKI_1 RGCY 8 cut(s) 9, 43, 98, 107, 113, 209, 266, 339
CviQI GTAC 1 cut(s) 135
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco130I CCWWGG 2 cut(s) 108, 304
Eco147I AGGCCT 1 cut(s) 266
Eco32I GATATC 1 cut(s) 24
Eco88I CYCGRG 2 cut(s) 268, 365
EcoRII CCWGG 1 cut(s) 347
EcoRV GATATC 1 cut(s) 24
EcoT14I CCWWGG 2 cut(s) 108, 304
ErhI CCWWGG 2 cut(s) 108, 304
FaeI CATG 1 cut(s) 60
FaiI YATR 9 cut(s) 58, 84, 86, 104, 154, 285, 300, 321, 336
FatI CATG 1 cut(s) 56
FauNDI CATATG 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 331
Fsp4HI GCNGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 54
GsaI CCCAGC 1 cut(s) 122
HaeIII GGCC 1 cut(s) 266
Hin1II CATG 1 cut(s) 60
HinfI GANTC 1 cut(s) 186
HphI GGTGA 1 cut(s) 18
Hpy166II GTNNAC 1 cut(s) 311
Hpy8I GTNNAC 1 cut(s) 311
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 119, 215, 272
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 1 cut(s) 60
Kzo9I GATC 1 cut(s) 258
LpnPI CCDG 5 cut(s) 53, 108, 132, 334, 361
MaeII ACGT 1 cut(s) 31
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 1 cut(s) 191
MluCI AATT 3 cut(s) 67, 194, 232
MnlI CCTC 6 cut(s) 175, 256, 264, 277, 280, 350
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 349
MvaI CCWGG 1 cut(s) 349
MwoI GCNNNNNNNGC 4 cut(s) 104, 119, 215, 272
NdeI CATATG 1 cut(s) 84
NdeII GATC 1 cut(s) 258
NlaIII CATG 1 cut(s) 60
NlaIV GGNNCC 1 cut(s) 127
NspI RCATGY 1 cut(s) 60
PaeI GCATGC 1 cut(s) 60
PaeR7I CTCGAG 2 cut(s) 268, 365
PceI AGGCCT 1 cut(s) 266
PfeI GAWTC 1 cut(s) 186
PfoI TCCNGGA 1 cut(s) 347
PkrI GCNGC 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 347
PspFI CCCAGC 1 cut(s) 118
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 1 cut(s) 127
PspXI VCTCGAGB 2 cut(s) 268, 365
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 349
SetI ASST 4 cut(s) 34, 211, 291, 310
Sfr274I CTCGAG 2 cut(s) 268, 365
SlaI CTCGAG 2 cut(s) 268, 365
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 2 cut(s) 268, 365
SmoI CTYRAG 2 cut(s) 268, 365
SphI GCATGC 1 cut(s) 60
Sse9I AATT 3 cut(s) 67, 194, 232
SseBI AGGCCT 1 cut(s) 266
SsiI CCGC 1 cut(s) 53
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 347
StyI CCWWGG 2 cut(s) 108, 304
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 1 cut(s) 34
TaqI TCGA 3 cut(s) 261, 269, 366
TasI AATT 3 cut(s) 67, 194, 232
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TspDTI ATGAA 3 cut(s) 24, 336, 369
XceI RCATGY 1 cut(s) 60
XhoI CTCGAG 2 cut(s) 268, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.