Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001508

Physical Location & Seq

Genomic Coordinates Forward (+)

35619515 .. 35623826

Gene Structure 4312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1301800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCGGTGGATGCAGCTATTGAAACCCTGTCTCCTCCGTTTCACTCTCCTTCCCATTTCAGCCCGCAGCGCAACTTCTACCTCGCCGTCGACAGACTCCATCTCATGATGGAGCCGTTGATGGACCTATTGGGCCTGGCGGGTAGGCGTTCGGGGTTGCCCATGGTGGTCTGCTGCAGCTCACGAGACGAGCTCGACGCCGTCTGCTCCGCCGTCGCCAATGTCCCCTTTATCTCTTTGGCTTCTCTGTACACTGACCTTGCTGAAGCAGACCGTTCTTTAATATTAGAGCATTTTCAGCAAGCAACAATGAGGTGGAACCCAGAAGTCAGTGCTCAACCAGCAGTTGATAGTGAGTCTGTGAAAGATGAACAAAAATCTCATATGATAGTTGCAACAGATGCATGCCTTCCGCTGCTTGCTTCTGGGGAGTCACCTATAGCCGCTCGTGTTCTTATAAATTACGAGTTACCGACAAAGAAGGAAACATATACGAGGCGTATGACAACTTTTTTGGCTGGAGATGGGATTGTAATCAACATGGTCGTTGGGGGTGAGGTCGTAACTCTCAAAAGTCTTGAAGAAAGTAGCAACCTGGTCATAGCTGAGATGCCCATACATATTTCTGAGATTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

Helicase_C

Protein Analysis

213

Amino Acids

23.17

Weight (kDa)

4.82

Isoelectric Point (pI)

59.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37020 AT4G37020
fragaria_vesca	FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950 FvH4_1g15950
malus_domestica	MD02G1301600.v1.1 MD02G1301800.v1.1 MD07G1022300.v1.1 MD17G1282900.v1.1
prunus_persica	Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1 Prupe.7G134300_v2.0.a1
pyrus_communis	pycom02g25340 pycom02g25350 pycom02g25400
rosa_chinensis	RchiOBHm_Chr2g0105351 RchiOBHm_Chr3g0472951
rosa_laevigata	RLG00000017419
rosa_multiflora	Rmu_co8381435.1_g000001 Rmu_sc0001407.1_g000022
rosa_roxburghii	Rroxscaffold_1G00022310 Rroxscaffold_2G00114060 Rroxscaffold_2G00126470 Rroxscaffold_2G00138270 Rroxscaffold_4G00312150 Rroxscaffold_4G00329030 Rroxscaffold_5G00344210 Rroxscaffold_5G00351740 Rroxscaffold_6G00388800 Rroxscaffold_6G00408610
rosa_rugosa	Rorug02G0127800 Rorug03G0292600
rosa_samantha	Rh1BG139100 Rh2AG178500 Rh2AG329700 Rh2BG186900 Rh2CG183000 Rh2DG184400 Rh3BG143700 Rh3BG208100 Rh3CG145000 Rh3DG145000 Rh3DG167900 Rh5DG241200 Rh5DG275600 Rh6DG097100 Rh6DG389000
rosa_wichuraiana	Rw2G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	458
AccBSI	CCGCTC	1 cut(s)	446
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	6 cut(s)	5, 65, 140, 210, 413, 444
AcuI	CTGAAG	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	23, 581
AjnI	CCWGG	2 cut(s)	135, 594
AluBI	AGCT	4 cut(s)	17, 180, 193, 605
AluI	AGCT	4 cut(s)	17, 180, 193, 605
Alw21I	GWGCWC	2 cut(s)	195, 337
Alw26I	GTCTC	2 cut(s)	36, 180
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	5 cut(s)	14, 67, 174, 177, 415
ArsI	GACNNNNNNTTYG	2 cut(s)	496, 528
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	124, 133
AsuHPI	GGTGA	2 cut(s)	426, 566
AvaII	GGWCC	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	195
BauI	CACGAG	2 cut(s)	183, 447
Bbv12I	GWGCWC	2 cut(s)	195, 337
BbvI	GCAGC	5 cut(s)	26, 79, 161, 189, 402
BccI	CCATC	4 cut(s)	103, 108, 115, 518
BceAI	ACGGC	4 cut(s)	71, 100, 185, 197
BciT130I	CCWGG	2 cut(s)	137, 596
BcoDI	GTCTC	2 cut(s)	36, 180
BfmI	CTRYAG	2 cut(s)	175, 438
BisI	GCNGC	6 cut(s)	15, 68, 175, 178, 416, 444
BlsI	GCNGC	6 cut(s)	16, 69, 176, 179, 417, 445
Bme1390I	CCNGG	2 cut(s)	137, 596
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	124, 133
BmiI	GGNNCC	2 cut(s)	114, 320
BmrFI	CCNGG	2 cut(s)	137, 596
BmsI	GCATC	2 cut(s)	391, 600
BplI	GAGNNNNNCTC	2 cut(s)	177, 209
BpmI	CTGGAG	1 cut(s)	540
BsaBI	GATNNNNATC	1 cut(s)	533
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	162
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bse8I	GATNNNNATC	1 cut(s)	533
BseBI	CCWGG	2 cut(s)	137, 596
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	16
BseJI	GATNNNNATC	1 cut(s)	533
BseMII	CTCAG	2 cut(s)	597, 618
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	5 cut(s)	26, 79, 161, 189, 402
BshFI	GGCC	1 cut(s)	135
BsiHKAI	GWGCWC	2 cut(s)	195, 337
BslFI	GGGAC	1 cut(s)	209
BsmAI	GTCTC	2 cut(s)	36, 180
BsmBI	CGTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	135
Bsp1286I	GDGCHC	2 cut(s)	195, 337
Bsp1407I	TGTACA	1 cut(s)	249
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	6 cut(s)	5, 65, 140, 210, 413, 444
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	2 cut(s)	598, 619
BspHI	TCATGA	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	114, 320
BspMAI	CTGCAG	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	446
BsrGI	TGTACA	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	162
BssNI	GRCGYC	1 cut(s)	198
BssSI	CACGAG	2 cut(s)	183, 447
BssT1I	CCWWGG	1 cut(s)	162
Bst2BI	CACGAG	2 cut(s)	183, 447
Bst2UI	CCWGG	2 cut(s)	137, 596
Bst4CI	ACNGT	1 cut(s)	275
BstACI	GRCGYC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstAUI	TGTACA	1 cut(s)	249
BstC8I	GCNNGC	4 cut(s)	65, 303, 406, 420
BstDEI	CTNAG	2 cut(s)	606, 627
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	72
BstMAI	GTCTC	2 cut(s)	36, 180
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 69, 298, 341, 401
BstNI	CCWGG	2 cut(s)	137, 596
BstNSI	RCATGY	1 cut(s)	408
BstSCI	CCNGG	2 cut(s)	135, 594
BstSFI	CTRYAG	2 cut(s)	175, 438
BstV1I	GCAGC	5 cut(s)	26, 79, 161, 189, 402
BsuRI	GGCC	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	252, 337
Cac8I	GCNNGC	4 cut(s)	65, 303, 406, 420
CciI	TCATGA	1 cut(s)	105
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	2 cut(s)	124, 133
CseI	GACGC	1 cut(s)	206
CsiI	ACCWGGT	1 cut(s)	594
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	4 cut(s)	106, 163, 405, 541
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	2 cut(s)	606, 627
EciI	GGCGGA	1 cut(s)	199
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	135, 594
EcoT14I	CCWWGG	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	4 cut(s)	109, 166, 408, 544
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	4 cut(s)	105, 162, 404, 540
FauI	CCCGC	2 cut(s)	72, 133
FauNDI	CATATG	1 cut(s)	384
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	6 cut(s)	15, 68, 175, 178, 416, 444
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	6 cut(s)	15, 68, 175, 178, 416, 444
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	6 cut(s)	15, 68, 175, 178, 416, 444
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	135
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	109, 166, 408, 544
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	3 cut(s)	96, 356, 431
HphI	GGTGA	2 cut(s)	426, 566
Hpy166II	GTNNAC	2 cut(s)	91, 252
Hpy188I	TCNGA	1 cut(s)	628
Hpy188III	TCNNGA	3 cut(s)	106, 183, 578
Hpy8I	GTNNAC	2 cut(s)	91, 252
Hpy99I	CGWCG	3 cut(s)	92, 200, 218
HpyAV	CCTTC	3 cut(s)	60, 419, 475
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4V	TGCA	4 cut(s)	14, 177, 395, 404
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 69, 298, 341, 401
HpyF3I	CTNAG	2 cut(s)	606, 627
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	109, 166, 408, 544
HspAI	GCGC	1 cut(s)	70
LmnI	GCTCC	2 cut(s)	112, 212
LpnPI	CCDG	9 cut(s)	41, 122, 149, 336, 354, 411, 504, 581, 608
Lsp1109I	GCAGC	5 cut(s)	26, 79, 161, 189, 402
LweI	GCATC	2 cut(s)	391, 600
MabI	ACCWGGT	1 cut(s)	594
MaeIII	GTNAC	3 cut(s)	432, 468, 562
MbiI	CCGCTC	1 cut(s)	446
MboII	GAAGA	1 cut(s)	593
MhlI	GDGCHC	2 cut(s)	195, 337
MluCI	AATT	1 cut(s)	460
MlyI	GAGTC	3 cut(s)	90, 365, 440
MnlI	CCTC	5 cut(s)	45, 92, 306, 489, 550
Mph1103I	ATGCAT	1 cut(s)	406
MseI	TTAA	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	415
MspR9I	CCNGG	2 cut(s)	137, 596
MvaI	CCWGG	2 cut(s)	137, 596
MwoI	GCNNNNNNNGC	5 cut(s)	11, 69, 298, 341, 401
NcoI	CCATGG	1 cut(s)	162
NdeI	CATATG	1 cut(s)	384
NlaIII	CATG	4 cut(s)	109, 166, 408, 544
NlaIV	GGNNCC	2 cut(s)	114, 320
NmuCI	GTSAC	1 cut(s)	432
NsiI	ATGCAT	1 cut(s)	406
NspI	RCATGY	1 cut(s)	408
PaeI	GCATGC	1 cut(s)	408
PagI	TCATGA	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	200
PkrI	GCNGC	6 cut(s)	16, 69, 176, 179, 417, 445
PleI	GAGTC	3 cut(s)	90, 364, 439
PpsI	GAGTC	3 cut(s)	90, 364, 439
PsiI	TTATAA	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	2 cut(s)	135, 594
PspGI	CCWGG	2 cut(s)	135, 594
PspN4I	GGNNCC	2 cut(s)	114, 320
PspPI	GGNCC	2 cut(s)	124, 133
PstI	CTGCAG	1 cut(s)	179
PsyI	GACNNNGTC	1 cut(s)	200
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SacI	GAGCTC	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	6 cut(s)	15, 68, 175, 178, 416, 444
Sau96I	GGNCC	2 cut(s)	124, 133
SchI	GAGTC	3 cut(s)	90, 365, 440
ScrFI	CCNGG	2 cut(s)	137, 596
SduI	GDGCHC	2 cut(s)	195, 337
SexAI	ACCWGGT	1 cut(s)	594
SfaNI	GCATC	2 cut(s)	391, 600
SfcI	CTRYAG	2 cut(s)	175, 438
SinI	GGWCC	1 cut(s)	124
SphI	GCATGC	1 cut(s)	408
Sse9I	AATT	1 cut(s)	460
SsiI	CCGC	6 cut(s)	5, 65, 140, 210, 413, 444
SspI	AATATT	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	135, 594
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	90, 195
TasI	AATT	1 cut(s)	460
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	1 cut(s)	446
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	2 cut(s)	259, 337
TseFI	GTSAC	1 cut(s)	432
TseI	GCWGC	5 cut(s)	14, 67, 174, 177, 415
Tsp45I	GTSAC	1 cut(s)	432
TspDTI	ATGAA	1 cut(s)	384
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	2 cut(s)	259, 337
Tth111I	GACNNNGTC	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	124
XceI	RCATGY	1 cut(s)	408
XmiI	GTMKAC	1 cut(s)	90
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.