Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000984

Physical Location & Seq

Genomic Coordinates Reverse (-)

18080233 .. 18082683

Gene Structure 2451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G38730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGTGTCGGACAATGAGATGGGTCTGGTATTAGCTGTGTCGTCGAGCGTCTTCATAGGTTCCAGCTTCATTTTGAAGAAGAAAGGTCTCAAGCGCGCTGCTGCTAATGGCACCCGCGCTGGTTTCGGAGGTTATACATATTTGTTAGAGCCACTTTGGTGGGTAGGCTTGGTAACAATGACTTTTGGAGAAATTGCTAACTTTGTGGCTTACGTTTATGCACCTGCTGTACTAGTCACTCCTCTTGGCGCATTAAGTATAATCATCAGTGCTGTTTTGGCACATTTCTTGTTAGACGAAAAACTTAGGAAAATGGGAGTTTGGGGATGTGTTTGTTGCATTGTGGGCTCAGTTATGATCGTCATACACGCACCTCAGGAGCAGACTCCCAATTCTGTAGAAGAAATCTGGAAACTAGCAATGCAACCAGCTTTTCTAATTTACGTAGCCATATCAATGTCGATAGTCCTTGCTTTGATTCTCTACTGTGAACCTCTCTGCGGCCAAACCAACATTCTTGTGTATATCGGAATTTGTTCATTGATGGGTTCTCTCACAGTTATGAGCATCAAGGCTGTAGGGATTGCCATAAAGTTAACATTTGAAGGGATAAACCAGATCTGGTATCCAGAGACTTGGTTTTTTGCCATGGTTGCAGCAATCTGTGTTGTTATGCAAATGATTTACCTCAACAAGGCGCTGGACACATTCAACGCAGCAATTGTTTCTCCAATCTATTATGTGATGTTCACAACACTCACAATTGTCGCTAGTGCAATCATGTTCAAGGACTGGAATGGGCAAAACACAGACAGCATAGCCTCTGAGATTTGTGGATTCATCACAGTGCTTACAGGAACGGTTATACTCCATTCCACGAGAGAAGAGGAACAAGCTTCGCCACGACGAATGAGATGGCAGGATTCAGGGAAGAGCTTTGACGAAGAACATTTGACAAGTTTGTACAGTCCTGAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051607 GO:0051704 GO:0051707 GO:0070838 GO:0071944 GO:0072511 GO:0097708 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

326

Amino Acids

35.9

Weight (kDa)

5.43

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	4 - 295	6.3e-138	Magnesium transporter NIPA
EamA	PF00892	7 - 121	1.1e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21120 AT4G38730
fragaria_vesca	FvH4_1g25650 FvH4_1g25650 FvH4_1g25650 FvH4_2g01760 FvH4_2g01760 FvH4_2g01760
malus_domestica	MD00G1128200.v1.1 MD03G1168400.v1.1 MD05G1116700.v1.1 MD10G1119800.v1.1 MD15G1139500.v1.1
prunus_persica	Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.8G161200_v2.0.a1 Prupe.8G161200_v2.0.a1
pyrus_communis	pycom03g12470 pycom05g11100 pycom10g10320 pycom15g12590 pycom520g00770
rosa_chinensis	RchiOBHm_Chr2g0124131 RchiOBHm_Chr5g0050741 RchiOBHm_Chr6g0244791
rosa_laevigata	RLG00000015328 RLG00000018785 RLG00000034727
rosa_multiflora	Rmu_sc0002064.1_g000008 Rmu_sc0002117.1_g000013 Rmu_sc0008812.1_g000003 Rmu_sc0036275.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120110 Rroxscaffold_7G00215490
rosa_rugosa	Rorug05G0263300 Rorug05G0263400 Rorug05G0263500 Rorug05G0510800.1 Rorug05G0510900
rosa_samantha	Rh2AG307700 Rh2BG316700 Rh5BG344900 Rh5CG372800 Rh5DG358000 Rh6BG021600
rosa_wichuraiana	Rw2G024800 Rw5G031660 Rw6G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	232
Acc36I	ACCTGC	1 cut(s)	232
AccB1I	GGYRCC	1 cut(s)	110
AccII	CGCG	2 cut(s)	96, 117
AciI	CCGC	2 cut(s)	115, 501
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	1 cut(s)	531
AfaI	GTAC	2 cut(s)	231, 965
AfiI	CCNNNNNNNGG	2 cut(s)	500, 694
AgsI	TTSAA	4 cut(s)	76, 605, 712, 787
AhlI	ACTAGT	1 cut(s)	232
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AleI	CACNNNNGTG	1 cut(s)	157
AluBI	AGCT	5 cut(s)	35, 66, 431, 896, 936
AluI	AGCT	5 cut(s)	35, 66, 431, 896, 936
Alw26I	GTCTC	2 cut(s)	92, 626
AoxI	GGCC	1 cut(s)	502
ApeKI	GCWGC	4 cut(s)	98, 101, 656, 716
ApoI	RAATTY	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	535
AspLEI	GCGC	5 cut(s)	96, 98, 119, 251, 700
AxyI	CCTNAGG	1 cut(s)	375
BanI	GGYRCC	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	350
BauI	CACGAG	1 cut(s)	877
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	4 cut(s)	85, 88, 668, 728
BccI	CCATC	3 cut(s)	13, 538, 909
BciVI	GTATCC	1 cut(s)	636
BcoDI	GTCTC	2 cut(s)	92, 626
BcuI	ACTAGT	1 cut(s)	232
BfaI	CTAG	3 cut(s)	233, 416, 771
BfmI	CTRYAG	2 cut(s)	396, 576
BfoI	RGCGCY	1 cut(s)	701
BfuAI	ACCTGC	1 cut(s)	232
BfuI	GTATCC	1 cut(s)	636
BglII	AGATCT	1 cut(s)	618
BisI	GCNGC	5 cut(s)	99, 102, 502, 657, 717
BlsI	GCNGC	5 cut(s)	100, 103, 503, 658, 718
BmiI	GGNNCC	2 cut(s)	61, 112
BmsI	GCATC	1 cut(s)	576
BpiI	GAAGAC	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	445
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	648
Bsc4I	CCNNNNNNNGG	2 cut(s)	500, 694
Bse1I	ACTGG	1 cut(s)	797
Bse21I	CCTNAGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	1 cut(s)	332
BseLI	CCNNNNNNNGG	2 cut(s)	500, 694
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	3 cut(s)	363, 389, 816
BseNI	ACTGG	1 cut(s)	797
BsePI	GCGCGC	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	231
BseXI	GCAGC	4 cut(s)	85, 88, 668, 728
Bsh1236I	CGCG	2 cut(s)	96, 117
BshFI	GGCC	1 cut(s)	504
BshNI	GGYRCC	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	500, 694
BsmAI	GTCTC	2 cut(s)	92, 626
BsnI	GGCC	1 cut(s)	504
Bso31I	GGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp1407I	TGTACA	1 cut(s)	963
Bsp143I	GATC	2 cut(s)	357, 618
Bsp19I	CCATGG	1 cut(s)	648
BspACI	CCGC	2 cut(s)	115, 501
BspANI	GGCC	1 cut(s)	504
BspCNI	CTCAG	3 cut(s)	362, 388, 817
BspFNI	CGCG	2 cut(s)	96, 117
BspLI	GGNNCC	2 cut(s)	61, 112
BspMI	ACCTGC	1 cut(s)	232
BspQI	GCTCTTC	1 cut(s)	926
BspT107I	GGYRCC	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	426
BsrGI	TGTACA	1 cut(s)	963
BsrI	ACTGG	1 cut(s)	797
BssECI	CCNNGG	1 cut(s)	648
BssHII	GCGCGC	1 cut(s)	94
BssMI	GATC	2 cut(s)	357, 618
BssSI	CACGAG	1 cut(s)	877
BssT1I	CCWWGG	1 cut(s)	648
Bst2BI	CACGAG	1 cut(s)	877
Bst4CI	ACNGT	5 cut(s)	488, 559, 847, 862, 968
Bst6I	CTCTTC	2 cut(s)	879, 926
BstAUI	TGTACA	1 cut(s)	963
BstBAI	YACGTR	1 cut(s)	445
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	4 cut(s)	305, 349, 375, 825
BstDSI	CCRYGG	1 cut(s)	648
BstENI	CCTNNNNNAGG	1 cut(s)	692
BstF5I	GGATG	1 cut(s)	332
BstFNI	CGCG	2 cut(s)	96, 117
BstH2I	RGCGCY	1 cut(s)	701
BstHHI	GCGC	5 cut(s)	96, 98, 119, 251, 700
BstKTI	GATC	2 cut(s)	360, 621
BstMAI	GTCTC	2 cut(s)	92, 626
BstMBI	GATC	2 cut(s)	357, 618
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 345, 653
BstSFI	CTRYAG	2 cut(s)	396, 576
BstSNI	TACGTA	1 cut(s)	445
BstUI	CGCG	2 cut(s)	96, 117
BstV1I	GCAGC	4 cut(s)	85, 88, 668, 728
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	618
BstXI	CCANNNNNNTGG	2 cut(s)	159, 636
BstYI	RGATCY	1 cut(s)	618
Bsu36I	CCTNAGG	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	636
BsuRI	GGCC	1 cut(s)	504
BtgI	CCRYGG	1 cut(s)	648
BtsCI	GGATG	1 cut(s)	332
BtsIMutI	CAGTG	2 cut(s)	274, 852
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	96
CfoI	GCGC	5 cut(s)	96, 98, 119, 251, 700
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	230, 964
CviAII	CATG	2 cut(s)	649, 781
CviQI	GTAC	2 cut(s)	230, 964
DdeI	CTNAG	4 cut(s)	305, 349, 375, 825
DpnI	GATC	2 cut(s)	359, 620
DpnII	GATC	2 cut(s)	357, 618
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	2 cut(s)	879, 926
EarI	CTCTTC	2 cut(s)	879, 926
Eco105I	TACGTA	1 cut(s)	445
Eco130I	CCWWGG	1 cut(s)	648
Eco24I	GRGCYC	1 cut(s)	350
Eco31I	GGTCTC	1 cut(s)	92
Eco81I	CCTNAGG	1 cut(s)	375
EcoNI	CCTNNNNNAGG	1 cut(s)	692
EcoT14I	CCWWGG	1 cut(s)	648
EcoT38I	GRGCYC	1 cut(s)	350
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	2 cut(s)	652, 784
FatI	CATG	2 cut(s)	648, 780
FauI	CCCGC	1 cut(s)	122
Fnu4HI	GCNGC	5 cut(s)	99, 102, 502, 657, 717
FokI	GGATG	1 cut(s)	339
FriOI	GRGCYC	1 cut(s)	350
Fsp4HI	GCNGC	5 cut(s)	99, 102, 502, 657, 717
FspBI	CTAG	3 cut(s)	233, 416, 771
GlaI	GCGC	5 cut(s)	95, 97, 118, 250, 699
GluI	GCNGC	5 cut(s)	99, 102, 502, 657, 717
HaeII	RGCGCY	1 cut(s)	701
HaeIII	GGCC	1 cut(s)	504
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	5 cut(s)	96, 98, 119, 251, 700
Hin1II	CATG	2 cut(s)	652, 784
Hin6I	GCGC	5 cut(s)	94, 96, 117, 249, 698
HinP1I	GCGC	5 cut(s)	94, 96, 117, 249, 698
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HindIII	AAGCTT	1 cut(s)	894
HinfI	GANTC	4 cut(s)	385, 478, 837, 923
HpaI	GTTAAC	1 cut(s)	597
Hpy166II	GTNNAC	3 cut(s)	491, 597, 750
Hpy188I	TCNGA	4 cut(s)	10, 128, 530, 826
Hpy188III	TCNNGA	4 cut(s)	377, 409, 629, 971
Hpy8I	GTNNAC	3 cut(s)	491, 597, 750
Hpy99I	CGWCG	2 cut(s)	46, 909
HpyAV	CCTTC	1 cut(s)	599
HpyCH4III	ACNGT	5 cut(s)	488, 559, 847, 862, 968
HpyCH4IV	ACGT	2 cut(s)	213, 444
HpyCH4V	TGCA	6 cut(s)	221, 339, 424, 656, 676, 776
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 345, 653
HpyF3I	CTNAG	4 cut(s)	305, 349, 375, 825
HpySE526I	ACGT	2 cut(s)	213, 444
Hsp92II	CATG	2 cut(s)	652, 784
HspAI	GCGC	5 cut(s)	94, 96, 117, 249, 698
KspAI	GTTAAC	1 cut(s)	597
Kzo9I	GATC	2 cut(s)	357, 618
LguI	GCTCTTC	1 cut(s)	926
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	4 cut(s)	85, 88, 668, 728
LweI	GCATC	1 cut(s)	576
MaeI	CTAG	3 cut(s)	233, 416, 771
MaeII	ACGT	2 cut(s)	213, 444
MaeIII	GTNAC	2 cut(s)	172, 235
MalI	GATC	2 cut(s)	359, 620
MboI	GATC	2 cut(s)	357, 618
MboII	GAAGA	7 cut(s)	43, 88, 91, 413, 896, 943, 956
MfeI	CAATTG	2 cut(s)	720, 762
MflI	RGATCY	1 cut(s)	618
MhlI	GDGCHC	1 cut(s)	350
MluCI	AATT	6 cut(s)	192, 391, 438, 531, 720, 762
MlyI	GAGTC	1 cut(s)	379
MnlI	CCTC	7 cut(s)	122, 252, 384, 504, 698, 832, 880
MroXI	GAANNNNTTC	1 cut(s)	535
MseI	TTAA	2 cut(s)	254, 596
MslI	CAYNNNNRTG	5 cut(s)	157, 455, 518, 560, 845
MunI	CAATTG	2 cut(s)	720, 762
MvnI	CGCG	2 cut(s)	96, 117
MwoI	GCNNNNNNNGC	3 cut(s)	278, 345, 653
NcoI	CCATGG	1 cut(s)	648
NdeII	GATC	2 cut(s)	357, 618
NlaIII	CATG	2 cut(s)	652, 784
NlaIV	GGNNCC	2 cut(s)	61, 112
NmuCI	GTSAC	1 cut(s)	235
OliI	CACNNNNGTG	1 cut(s)	157
PaqCI	CACCTGC	1 cut(s)	232
PauI	GCGCGC	1 cut(s)	94
PciSI	GCTCTTC	1 cut(s)	926
PdmI	GAANNNNTTC	1 cut(s)	535
PfeI	GAWTC	3 cut(s)	478, 837, 923
PkrI	GCNGC	5 cut(s)	100, 103, 503, 658, 718
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Ppu21I	YACGTR	1 cut(s)	445
PspN4I	GGNNCC	2 cut(s)	61, 112
PsuI	RGATCY	1 cut(s)	618
PteI	GCGCGC	1 cut(s)	94
RsaI	GTAC	2 cut(s)	231, 965
RsaNI	GTAC	2 cut(s)	230, 964
RseI	CAYNNNNRTG	5 cut(s)	157, 455, 518, 560, 845
SapI	GCTCTTC	1 cut(s)	926
SaqAI	TTAA	2 cut(s)	254, 596
SatI	GCNGC	5 cut(s)	99, 102, 502, 657, 717
Sau3AI	GATC	2 cut(s)	357, 618
SchI	GAGTC	1 cut(s)	379
SduI	GDGCHC	1 cut(s)	350
SfaNI	GCATC	1 cut(s)	576
SfcI	CTRYAG	2 cut(s)	396, 576
SmiMI	CAYNNNNRTG	5 cut(s)	157, 455, 518, 560, 845
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SnaBI	TACGTA	1 cut(s)	445
SpeI	ACTAGT	1 cut(s)	232
Sse9I	AATT	6 cut(s)	192, 391, 438, 531, 720, 762
SsiI	CCGC	2 cut(s)	115, 501
SspI	AATATT	1 cut(s)	977
SspMI	CTAG	3 cut(s)	233, 416, 771
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	5 cut(s)	488, 559, 847, 862, 968
TaiI	ACGT	2 cut(s)	216, 447
TaqI	TCGA	2 cut(s)	44, 461
TasI	AATT	6 cut(s)	192, 391, 438, 531, 720, 762
TatI	WGTACW	2 cut(s)	229, 963
TauI	GCSGC	1 cut(s)	504
TfiI	GAWTC	3 cut(s)	478, 837, 923
Tru1I	TTAA	2 cut(s)	254, 596
Tru9I	TTAA	2 cut(s)	254, 596
TscAI	CASTG	2 cut(s)	274, 852
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	4 cut(s)	98, 101, 656, 716
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	4 cut(s)	43, 58, 528, 829
TspRI	CASTG	2 cut(s)	274, 852
XagI	CCTNNNNNAGG	1 cut(s)	692
XapI	RAATTY	1 cut(s)	531
XmnI	GAANNNNTTC	1 cut(s)	535
XspI	CTAG	3 cut(s)	233, 416, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.