Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000984

Physical Location & Seq

Genomic Coordinates Forward (+)

19675474 .. 19679386

Gene Structure 3913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1119800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGGGTTTCGGAGAATACAAAGGGGTTGATACTGGCGATGGCGTCGAGCGCCTTCATCGGGGCGAGCTTCATCCTGAAGAAGAAGGGTCTCAAGAGCGCCGCCGCCGCCGGCACCCGAGCAGGAGTTGGTGGGTATACATACTTACTAGAACCTCTCTGGTGGGCTGGCATGATCACCATGATTGTTGGGGAAGTTGCCAATTTCGTGGCTTATGTATATGCTCCGGCGGTTCTTGTAACACCACTTGGTGCACTGAGTATAATCGTCAGTGCTGTTTTGGCTCACTTCTTGTTGAAGGAACGAATAACGAAAATGGGTATTGTGGGATGTCTTACCTGCATCGTGGGATCAGTTGTGATTGTGATCCATGCACCTCGGGAGCATAGTCTAAATTCTGTAGAGGAAATCTGGGTCCTGGCGACCCAAACAGCCTTTCTGATTTATGTTGCAGTTACAATTACCCTAGTGTTAGTTTTGGTCTTGCATTTTGAACCTCAGTATGGACAAACGAACATACTAGTCTATTTGGGAATCTGTTCCTTGATGGGTTCACTTACGGTTGTAAGCATAAAGGCAATTGGAATTGCTATAAAGCTGACCCTTGAGGGAGTAAGTCAGATAGCTTATCCACAGACATGGTTTTTTCTGACAGTTGCAATAATCTGCGTTGTTACACAGTTAAATTACCTTAACAAGGCTTTGGATACATTCAATGCTGCAATTGTTGCCCCAGTATATTATGTGATGTTCACAACTCTGACCATAATTGCTAGTGTAATAATGTTCAAGGATTGGTCTGGCCAGAATGTAAGCAGCATAGCCTCTGAAATATGTGGATTCATCACTGTGCTGTCAGGAACCATCATACTCCATGCAACAAGAGATCAGGAACCACCTGCTCCACAACCACAAGGAACTGTAACATGGTACATTAGAGGAGATTCAGTGAAGAGTTCTGAAGATGAACGTTTGCTCACTTTACAGAATTCAGATTATCCTGAACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051607 GO:0051704 GO:0051707 GO:0070838 GO:0071944 GO:0072511 GO:0097708 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

337

Amino Acids

36.18

Weight (kDa)

6.21

Isoelectric Point (pI)

23.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	6 - 296	5e-135	Magnesium transporter NIPA
EamA	PF00892	8 - 122	9.7e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21120 AT4G38730
fragaria_vesca	FvH4_1g25650 FvH4_1g25650 FvH4_1g25650 FvH4_2g01760 FvH4_2g01760 FvH4_2g01760
malus_domestica	MD00G1128200.v1.1 MD03G1168400.v1.1 MD05G1116700.v1.1 MD10G1119800.v1.1 MD15G1139500.v1.1
prunus_persica	Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.8G161200_v2.0.a1 Prupe.8G161200_v2.0.a1
pyrus_communis	pycom03g12470 pycom05g11100 pycom10g10320 pycom15g12590 pycom520g00770
rosa_chinensis	RchiOBHm_Chr2g0124131 RchiOBHm_Chr5g0050741 RchiOBHm_Chr6g0244791
rosa_laevigata	RLG00000015328 RLG00000018785 RLG00000034727
rosa_multiflora	Rmu_sc0002064.1_g000008 Rmu_sc0002117.1_g000013 Rmu_sc0008812.1_g000003 Rmu_sc0036275.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120110 Rroxscaffold_7G00215490
rosa_rugosa	Rorug05G0263300 Rorug05G0263400 Rorug05G0263500 Rorug05G0510800.1 Rorug05G0510900
rosa_samantha	Rh2AG307700 Rh2BG316700 Rh5BG344900 Rh5CG372800 Rh5DG358000 Rh6BG021600
rosa_wichuraiana	Rw2G024800 Rw5G031660 Rw6G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	907
Acc36I	ACCTGC	2 cut(s)	347, 907
AccB1I	GGYRCC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	137
AciI	CCGC	4 cut(s)	102, 105, 108, 230
AclI	AACGTT	1 cut(s)	970
AclWI	GGATC	2 cut(s)	358, 361
AcoI	YGGCCR	1 cut(s)	802
AcsI	RAATTY	2 cut(s)	394, 988
AcuI	CTGAAG	2 cut(s)	98, 981
AcyI	GRCGYC	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	1 cut(s)	932
AfiI	CCNNNNNNNGG	3 cut(s)	60, 503, 697
AgsI	TTSAA	4 cut(s)	298, 494, 715, 790
AhlI	ACTAGT	1 cut(s)	520
AjnI	CCWGG	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	3 cut(s)	69, 598, 626
AluI	AGCT	3 cut(s)	69, 598, 626
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	95
Alw44I	GTGCAC	1 cut(s)	252
AlwI	GGATC	2 cut(s)	358, 361
Ama87I	CYCGRG	2 cut(s)	117, 378
AoxI	GGCC	1 cut(s)	802
ApaLI	GTGCAC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	719, 816
ApoI	RAATTY	2 cut(s)	394, 988
Asp700I	GAANNNNTTC	1 cut(s)	538
AspLEI	GCGC	2 cut(s)	53, 101
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	169
AvaI	CYCGRG	2 cut(s)	117, 378
AvaII	GGWCC	1 cut(s)	415
BaeGI	GKGCMC	1 cut(s)	256
BalI	TGGCCA	1 cut(s)	804
BanI	GGYRCC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	2 cut(s)	706, 828
BccI	CCATC	3 cut(s)	34, 541, 872
BciT130I	CCWGG	1 cut(s)	419
BciVI	GTATCC	1 cut(s)	700
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	95
BcuI	ACTAGT	1 cut(s)	520
BfaI	CTAG	4 cut(s)	149, 467, 521, 774
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	2 cut(s)	54, 102
BfuAI	ACCTGC	2 cut(s)	347, 907
BfuI	GTATCC	1 cut(s)	700
BisI	GCNGC	5 cut(s)	102, 105, 108, 720, 817
BlsI	GCNGC	5 cut(s)	103, 106, 109, 721, 818
Bme1390I	CCNGG	1 cut(s)	419
Bme18I	GGWCC	1 cut(s)	415
BmeT110I	CYCGRG	2 cut(s)	117, 378
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	4 cut(s)	115, 416, 862, 894
BmrFI	CCNGG	1 cut(s)	419
BmrI	ACTGGG	1 cut(s)	728
BmsI	GCATC	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	728
BpuEI	CTTGAG	2 cut(s)	77, 626
BsaBI	GATNNNNATC	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	377
BsaXI	ACNNNNNCTCC	2 cut(s)	933, 963
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 503, 697
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	39, 734
Bse8I	GATNNNNATC	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	2 cut(s)	72, 335
BseJI	GATNNNNATC	1 cut(s)	365
BseLI	CCNNNNNNNGG	3 cut(s)	60, 503, 697
BseMII	CTCAG	2 cut(s)	248, 512
BseNI	ACTGG	2 cut(s)	39, 734
BseRI	GAGGAG	1 cut(s)	954
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	2 cut(s)	706, 828
BshFI	GGCC	1 cut(s)	804
BshNI	GGYRCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	256
BsiHKCI	CYCGRG	2 cut(s)	117, 378
BsiSI	CCGG	2 cut(s)	111, 227
BslI	CCNNNNNNNGG	3 cut(s)	60, 503, 697
BsmAI	GTCTC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	804
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	2 cut(s)	117, 378
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	4 cut(s)	174, 350, 366, 886
BspACI	CCGC	4 cut(s)	102, 105, 108, 230
BspANI	GGCC	1 cut(s)	804
BspCNI	CTCAG	2 cut(s)	249, 511
BspLI	GGNNCC	4 cut(s)	115, 416, 862, 894
BspMI	ACCTGC	2 cut(s)	347, 907
BspPI	GGATC	2 cut(s)	358, 361
BspT107I	GGYRCC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	39, 734
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	4 cut(s)	174, 350, 366, 886
BssNAI	GTATAC	1 cut(s)	138
BssNI	GRCGYC	1 cut(s)	44
Bst1107I	GTATAC	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	6 cut(s)	562, 655, 681, 850, 922, 1008
Bst6I	CTCTTC	1 cut(s)	947
BstACI	GRCGYC	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstC8I	GCNNGC	3 cut(s)	67, 112, 169
BstDEI	CTNAG	2 cut(s)	257, 498
BstENI	CCTNNNNNAGG	1 cut(s)	695
BstF5I	GGATG	2 cut(s)	72, 335
BstH2I	RGCGCY	2 cut(s)	54, 102
BstHHI	GCGC	2 cut(s)	53, 101
BstKTI	GATC	4 cut(s)	177, 353, 369, 889
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	4 cut(s)	174, 350, 366, 886
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 107, 281, 728
BstNI	CCWGG	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	417
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	256
BstV1I	GCAGC	2 cut(s)	706, 828
BstXI	CCANNNNNNTGG	2 cut(s)	208, 639
BstZ17I	GTATAC	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	700
BsuRI	GGCC	1 cut(s)	804
BtgZI	GCGATG	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	72, 335
BtsIMutI	CAGTG	4 cut(s)	254, 277, 846, 954
BveI	ACCTGC	2 cut(s)	347, 907
Cac8I	GCNNGC	3 cut(s)	67, 112, 169
CfoI	GCGC	2 cut(s)	53, 101
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	415
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	931
CviAII	CATG	6 cut(s)	172, 181, 371, 639, 875, 927
CviQI	GTAC	1 cut(s)	931
DdeI	CTNAG	2 cut(s)	257, 498
DpnI	GATC	4 cut(s)	176, 352, 368, 888
DpnII	GATC	4 cut(s)	174, 350, 366, 886
DraIII	CACNNNGTG	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	802
Eam1104I	CTCTTC	1 cut(s)	947
EarI	CTCTTC	1 cut(s)	947
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	98, 981
Eco88I	CYCGRG	2 cut(s)	117, 378
EcoNI	CCTNNNNNAGG	1 cut(s)	695
EcoO109I	RGGNCCY	1 cut(s)	415
EcoRI	GAATTC	1 cut(s)	988
EcoRII	CCWGG	1 cut(s)	417
FaeI	CATG	6 cut(s)	175, 184, 374, 642, 878, 930
FatI	CATG	6 cut(s)	171, 180, 370, 638, 874, 926
FbaI	TGATCA	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	5 cut(s)	102, 105, 108, 720, 817
FokI	GGATG	2 cut(s)	59, 342
Fsp4HI	GCNGC	5 cut(s)	102, 105, 108, 720, 817
FspBI	CTAG	4 cut(s)	149, 467, 521, 774
GlaI	GCGC	2 cut(s)	52, 100
GluI	GCNGC	5 cut(s)	102, 105, 108, 720, 817
HaeII	RGCGCY	2 cut(s)	54, 102
HaeIII	GGCC	1 cut(s)	804
HapII	CCGG	2 cut(s)	111, 227
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	2 cut(s)	53, 101
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	6 cut(s)	175, 184, 374, 642, 878, 930
Hin6I	GCGC	2 cut(s)	51, 99
HinP1I	GCGC	2 cut(s)	51, 99
HinfI	GANTC	3 cut(s)	534, 840, 944
HpaII	CCGG	2 cut(s)	111, 227
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	4 cut(s)	138, 254, 554, 753
Hpy188I	TCNGA	8 cut(s)	13, 441, 621, 651, 762, 829, 961, 994
Hpy188III	TCNNGA	6 cut(s)	76, 94, 380, 858, 890, 1001
Hpy8I	GTNNAC	4 cut(s)	138, 254, 554, 753
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	3 cut(s)	64, 79, 292
HpyCH4III	ACNGT	6 cut(s)	562, 655, 681, 850, 922, 1008
HpyCH4IV	ACGT	1 cut(s)	970
HpyCH4V	TGCA	8 cut(s)	254, 342, 374, 452, 487, 659, 722, 878
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 107, 281, 728
HpyF3I	CTNAG	2 cut(s)	257, 498
HpySE526I	ACGT	1 cut(s)	970
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	6 cut(s)	175, 184, 374, 642, 878, 930
HspAI	GCGC	2 cut(s)	51, 99
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	174, 350, 366, 886
LmnI	GCTCC	3 cut(s)	229, 382, 907
Lsp1109I	GCAGC	2 cut(s)	706, 828
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	4 cut(s)	149, 467, 521, 774
MaeII	ACGT	1 cut(s)	970
MaeIII	GTNAC	4 cut(s)	238, 454, 673, 922
MalI	GATC	4 cut(s)	176, 352, 368, 888
MboI	GATC	4 cut(s)	174, 350, 366, 886
MboII	GAAGA	4 cut(s)	91, 94, 964, 974
MfeI	CAATTG	2 cut(s)	579, 723
MhlI	GDGCHC	1 cut(s)	256
MlsI	TGGCCA	1 cut(s)	804
MluCI	AATT	9 cut(s)	202, 394, 459, 579, 585, 685, 723, 768, 988
MluNI	TGGCCA	1 cut(s)	804
MnlI	CCTC	7 cut(s)	165, 387, 397, 507, 601, 835, 932
Mox20I	TGGCCA	1 cut(s)	804
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	538
MscI	TGGCCA	1 cut(s)	804
MseI	TTAA	2 cut(s)	683, 693
MslI	CAYNNNNRTG	2 cut(s)	637, 848
Msp20I	TGGCCA	1 cut(s)	804
MspI	CCGG	2 cut(s)	111, 227
MspR9I	CCNGG	1 cut(s)	419
MunI	CAATTG	2 cut(s)	579, 723
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	4 cut(s)	50, 107, 281, 728
NaeI	GCCGGC	1 cut(s)	112
NdeII	GATC	4 cut(s)	174, 350, 366, 886
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	6 cut(s)	175, 184, 374, 642, 878, 930
NlaIV	GGNNCC	4 cut(s)	115, 416, 862, 894
PaqCI	CACCTGC	1 cut(s)	907
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	538
PfeI	GAWTC	3 cut(s)	534, 840, 944
PkrI	GCNGC	5 cut(s)	103, 106, 109, 721, 818
PpuMI	RGGWCCY	1 cut(s)	415
Psp1406I	AACGTT	1 cut(s)	970
Psp5II	RGGWCCY	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	4 cut(s)	115, 416, 862, 894
PspPI	GGNCC	1 cut(s)	415
PspPPI	RGGWCCY	1 cut(s)	415
RsaI	GTAC	1 cut(s)	932
RsaNI	GTAC	1 cut(s)	931
RseI	CAYNNNNRTG	2 cut(s)	637, 848
SaqAI	TTAA	2 cut(s)	683, 693
SatI	GCNGC	5 cut(s)	102, 105, 108, 720, 817
Sau3AI	GATC	4 cut(s)	174, 350, 366, 886
Sau96I	GGNCC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	1 cut(s)	256
SfaNI	GCATC	1 cut(s)	351
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	2 cut(s)	637, 848
SmlI	CTYRAG	2 cut(s)	92, 605
SmoI	CTYRAG	2 cut(s)	92, 605
SpeI	ACTAGT	1 cut(s)	520
Sse9I	AATT	9 cut(s)	202, 394, 459, 579, 585, 685, 723, 768, 988
SsiI	CCGC	4 cut(s)	102, 105, 108, 230
SspMI	CTAG	4 cut(s)	149, 467, 521, 774
StyD4I	CCNGG	1 cut(s)	417
TaaI	ACNGT	6 cut(s)	562, 655, 681, 850, 922, 1008
TaiI	ACGT	1 cut(s)	973
TaqI	TCGA	1 cut(s)	47
TasI	AATT	9 cut(s)	202, 394, 459, 579, 585, 685, 723, 768, 988
TauI	GCSGC	3 cut(s)	104, 107, 110
TfiI	GAWTC	3 cut(s)	534, 840, 944
Tru1I	TTAA	2 cut(s)	683, 693
Tru9I	TTAA	2 cut(s)	683, 693
TscAI	CASTG	4 cut(s)	261, 277, 853, 954
TseI	GCWGC	2 cut(s)	719, 816
TspDTI	ATGAA	4 cut(s)	46, 61, 832, 981
TspRI	CASTG	4 cut(s)	261, 277, 853, 954
VneI	GTGCAC	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	415
XagI	CCTNNNNNAGG	1 cut(s)	695
XapI	RAATTY	2 cut(s)	394, 988
XmiI	GTMKAC	1 cut(s)	137
XmnI	GAANNNNTTC	1 cut(s)	538
XspI	CTAG	4 cut(s)	149, 467, 521, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.