Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000984

Physical Location & Seq

Genomic Coordinates Forward (+)

16953945 .. 16958587

Gene Structure 4643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G161200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGGGGTGTCAGAGAATACGAAGGGGCTGATACTAGCGATGGCGTCGAGCGCCTTCATAGGCGCGAGCTTCATCTTGAAGAAGAAGGGTCTCAAGCGCGCTGGAGCTGCCGGTACTCGAGCAGGAGTTGGTGGTTATACTTACTTACTAGAGCCACTTTGGTGGGCGGGCATGATCACCATGATTGGTGGAGAGGTTGCCAATTTTGTGGCTTATGTATATGCTCCAGCAGTTCTTGTAACCCCACTTGGTGCACTGAGTATAATAGTCAGTGCTGTTTTGGCTCACTTCTTGTTGAAGGAACGAATACAGAAAATGGGTATTGTGGGATGTGTTACCTGCATCGTGGGATCAGTGGTAATTGTGATCCATGCACCTCAAGAGCATATTCTAAATTCTGTACAGGAAATCTGGGTTCTGGCGACCCAACCAGCTTTTCTGGTTTACGTTGCTGCTACACTTTCCCTAGTGTTAACTTTGGTTTTGCATTTTGAACCTCACTATGGGCAAACAAATATACTAGTCTACTTGGGAATCTGTTCCTTGATGGGTTCACTTACGGTTGTAAGCATAAAGGCCATTGGAATTGCAATAAAGCTAACTCTTGAGGGAGTAAGTCAGATAGCCTATCCTCAGACTTGGTTTTTTCTGACTGTTGCAGTAATCTGCGTAGTTACACAGTTGAATTACCTCAACAAGGCTTTGGATACATTCAATGCAGCAATTGTTGCCCCAGTATATTATGTGATGTTCACAACTCTGACCATTATTGCTAGTGTAATAATGTTCAAGGATTGGTCTGGTCAGGATGTAAGCAGCATAGCCTCTGAAATATGTGGATTCATCACTGTTCTGTCAGGAACTATCATACTCCATGCAACCAAAAATGAGGAAACATCTACACAAGGAACTGTAACATGGTACATTAGAGATTCAATGAAGGGCTCTGAAGATGAACGTTTGCTCACCTTACACAATTCAGATTATCCTGAACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051607 GO:0051704 GO:0051707 GO:0070838 GO:0071944 GO:0072511 GO:0097708 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

333

Amino Acids

35.77

Weight (kDa)

6.37

Isoelectric Point (pI)

25.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21120 AT4G38730
fragaria_vesca	FvH4_1g25650 FvH4_1g25650 FvH4_1g25650 FvH4_2g01760 FvH4_2g01760 FvH4_2g01760
malus_domestica	MD00G1128200.v1.1 MD03G1168400.v1.1 MD05G1116700.v1.1 MD10G1119800.v1.1 MD15G1139500.v1.1
prunus_persica	Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.8G161200_v2.0.a1 Prupe.8G161200_v2.0.a1
pyrus_communis	pycom03g12470 pycom05g11100 pycom10g10320 pycom15g12590 pycom520g00770
rosa_chinensis	RchiOBHm_Chr2g0124131 RchiOBHm_Chr5g0050741 RchiOBHm_Chr6g0244791
rosa_laevigata	RLG00000015328 RLG00000018785 RLG00000034727
rosa_multiflora	Rmu_sc0002064.1_g000008 Rmu_sc0002117.1_g000013 Rmu_sc0008812.1_g000003 Rmu_sc0036275.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120110 Rroxscaffold_7G00215490
rosa_rugosa	Rorug05G0263300 Rorug05G0263400 Rorug05G0263500 Rorug05G0510800.1 Rorug05G0510900
rosa_samantha	Rh2AG307700 Rh2BG316700 Rh5BG344900 Rh5CG372800 Rh5DG358000 Rh6BG021600
rosa_wichuraiana	Rw2G024800 Rw5G031660 Rw6G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	525
AccII	CGCG	2 cut(s)	65, 99
AciI	CCGC	1 cut(s)	167
AclI	AACGTT	1 cut(s)	958
AclWI	GGATC	2 cut(s)	358, 361
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	969
AcyI	GRCGYC	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	3 cut(s)	115, 402, 923
AfiI	CCNNNNNNNGG	2 cut(s)	503, 697
AgsI	TTSAA	7 cut(s)	79, 298, 494, 685, 715, 790, 936
AhlI	ACTAGT	1 cut(s)	520
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AleI	CACNNNNGTG	1 cut(s)	160
AluBI	AGCT	4 cut(s)	69, 107, 434, 598
AluI	AGCT	4 cut(s)	69, 107, 434, 598
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	95
Alw44I	GTGCAC	1 cut(s)	252
AlwI	GGATC	2 cut(s)	358, 361
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	1 cut(s)	576
ApaLI	GTGCAC	1 cut(s)	252
ApeKI	GCWGC	4 cut(s)	107, 452, 719, 816
ApoI	RAATTY	1 cut(s)	394
Asp700I	GAANNNNTTC	1 cut(s)	538
AspLEI	GCGC	4 cut(s)	53, 65, 99, 101
AsuHPI	GGTGA	2 cut(s)	169, 958
AvaI	CYCGRG	1 cut(s)	117
BaeGI	GKGCMC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	947
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	4 cut(s)	94, 439, 731, 828
BccI	CCATC	2 cut(s)	34, 541
BciVI	GTATCC	1 cut(s)	700
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	95
BcuI	ACTAGT	1 cut(s)	520
BfaI	CTAG	5 cut(s)	35, 149, 467, 521, 774
BfoI	RGCGCY	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	347
BfuI	GTATCC	1 cut(s)	700
BisI	GCNGC	4 cut(s)	108, 453, 720, 817
BlsI	GCNGC	4 cut(s)	109, 454, 721, 818
BmeT110I	CYCGRG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	728
BmsI	GCATC	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	728
BpmI	CTGGAG	2 cut(s)	123, 210
BpuEI	CTTGAG	3 cut(s)	77, 363, 626
BsaHI	GRCGYC	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	2 cut(s)	503, 697
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	734
BseGI	GGATG	2 cut(s)	335, 814
BseLI	CCNNNNNNNGG	2 cut(s)	503, 697
BseMII	CTCAG	2 cut(s)	248, 647
BseNI	ACTGG	1 cut(s)	734
BsePI	GCGCGC	1 cut(s)	97
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	4 cut(s)	94, 439, 731, 828
Bsh1236I	CGCG	2 cut(s)	65, 99
BshFI	GGCC	1 cut(s)	578
BsiHKAI	GWGCWC	1 cut(s)	256
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	503, 697
BsmAI	GTCTC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	578
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	256, 947
Bsp1407I	TGTACA	1 cut(s)	400
Bsp143I	GATC	3 cut(s)	174, 350, 366
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	1 cut(s)	578
BspCNI	CTCAG	2 cut(s)	249, 646
BspFNI	CGCG	2 cut(s)	65, 99
BspMI	ACCTGC	1 cut(s)	347
BspPI	GGATC	2 cut(s)	358, 361
BspTNI	GGTCTC	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	734
BssAI	RCCGGY	1 cut(s)	110
BssHII	GCGCGC	1 cut(s)	97
BssMI	GATC	3 cut(s)	174, 350, 366
BssNI	GRCGYC	1 cut(s)	44
Bst4CI	ACNGT	6 cut(s)	562, 655, 681, 850, 913, 996
BstACI	GRCGYC	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstAUI	TGTACA	1 cut(s)	400
BstC8I	GCNNGC	3 cut(s)	67, 99, 169
BstDEI	CTNAG	2 cut(s)	257, 633
BstENI	CCTNNNNNAGG	1 cut(s)	695
BstF5I	GGATG	2 cut(s)	335, 814
BstFNI	CGCG	2 cut(s)	65, 99
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	4 cut(s)	53, 65, 99, 101
BstKTI	GATC	3 cut(s)	177, 353, 369
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	3 cut(s)	174, 350, 366
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 107, 281, 728
BstSLI	GKGCMC	1 cut(s)	256
BstUI	CGCG	2 cut(s)	65, 99
BstV1I	GCAGC	4 cut(s)	94, 439, 731, 828
BstXI	CCANNNNNNTGG	2 cut(s)	162, 208
BsuI	GTATCC	1 cut(s)	700
BsuRI	GGCC	1 cut(s)	578
BtgZI	GCGATG	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	335, 814
BtsIMutI	CAGTG	4 cut(s)	254, 277, 360, 846
BveI	ACCTGC	1 cut(s)	347
Cac8I	GCNNGC	3 cut(s)	67, 99, 169
CfoI	GCGC	4 cut(s)	53, 65, 99, 101
Cfr10I	RCCGGY	1 cut(s)	110
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	3 cut(s)	114, 401, 922
CviAII	CATG	5 cut(s)	172, 181, 371, 875, 918
CviQI	GTAC	3 cut(s)	114, 401, 922
DdeI	CTNAG	2 cut(s)	257, 633
DpnI	GATC	3 cut(s)	176, 352, 368
DpnII	GATC	3 cut(s)	174, 350, 366
DraIII	CACNNNGTG	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	947
Eco31I	GGTCTC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	969
Eco88I	CYCGRG	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	695
EcoT38I	GRGCYC	1 cut(s)	947
FaeI	CATG	5 cut(s)	175, 184, 374, 878, 921
FatI	CATG	5 cut(s)	171, 180, 370, 874, 917
FauI	CCCGC	1 cut(s)	160
FbaI	TGATCA	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	4 cut(s)	108, 453, 720, 817
FokI	GGATG	2 cut(s)	342, 821
FriOI	GRGCYC	1 cut(s)	947
Fsp4HI	GCNGC	4 cut(s)	108, 453, 720, 817
FspBI	CTAG	5 cut(s)	35, 149, 467, 521, 774
GlaI	GCGC	4 cut(s)	52, 64, 98, 100
GluI	GCNGC	4 cut(s)	108, 453, 720, 817
GsuI	CTGGAG	2 cut(s)	123, 210
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	578
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	4 cut(s)	53, 65, 99, 101
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	5 cut(s)	175, 184, 374, 878, 921
Hin6I	GCGC	4 cut(s)	51, 63, 97, 99
HinP1I	GCGC	4 cut(s)	51, 63, 97, 99
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HinfI	GANTC	3 cut(s)	534, 840, 932
HpaI	GTTAAC	1 cut(s)	474
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	2 cut(s)	169, 958
Hpy166II	GTNNAC	6 cut(s)	254, 445, 474, 526, 554, 753
Hpy188I	TCNGA	8 cut(s)	13, 621, 636, 651, 762, 829, 949, 982
Hpy188III	TCNNGA	6 cut(s)	76, 380, 605, 806, 858, 989
Hpy8I	GTNNAC	6 cut(s)	254, 445, 474, 526, 554, 753
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	5 cut(s)	16, 64, 79, 292, 934
HpyCH4III	ACNGT	6 cut(s)	562, 655, 681, 850, 913, 996
HpyCH4IV	ACGT	2 cut(s)	447, 958
HpyCH4V	TGCA	8 cut(s)	254, 342, 374, 487, 590, 659, 719, 878
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 107, 281, 728
HpyF3I	CTNAG	2 cut(s)	257, 633
HpySE526I	ACGT	2 cut(s)	447, 958
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	5 cut(s)	175, 184, 374, 878, 921
HspAI	GCGC	4 cut(s)	51, 63, 97, 99
Ksp22I	TGATCA	1 cut(s)	174
KspAI	GTTAAC	1 cut(s)	474
Kzo9I	GATC	3 cut(s)	174, 350, 366
LmnI	GCTCC	2 cut(s)	104, 229
Lsp1109I	GCAGC	4 cut(s)	94, 439, 731, 828
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	5 cut(s)	35, 149, 467, 521, 774
MaeII	ACGT	2 cut(s)	447, 958
MaeIII	GTNAC	4 cut(s)	238, 334, 673, 913
MalI	GATC	3 cut(s)	176, 352, 368
MboI	GATC	3 cut(s)	174, 350, 366
MboII	GAAGA	3 cut(s)	91, 94, 962
MfeI	CAATTG	1 cut(s)	723
MhlI	GDGCHC	2 cut(s)	256, 947
MluCI	AATT	7 cut(s)	202, 360, 394, 585, 685, 723, 976
MnlI	CCTC	8 cut(s)	187, 387, 507, 601, 642, 701, 835, 883
MroXI	GAANNNNTTC	1 cut(s)	538
MseI	TTAA	1 cut(s)	473
MslI	CAYNNNNRTG	1 cut(s)	160
MspI	CCGG	1 cut(s)	111
MunI	CAATTG	1 cut(s)	723
MvnI	CGCG	2 cut(s)	65, 99
MwoI	GCNNNNNNNGC	4 cut(s)	50, 107, 281, 728
NdeII	GATC	3 cut(s)	174, 350, 366
NlaIII	CATG	5 cut(s)	175, 184, 374, 878, 921
OliI	CACNNNNGTG	1 cut(s)	160
PaeR7I	CTCGAG	1 cut(s)	117
PauI	GCGCGC	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	538
PfeI	GAWTC	3 cut(s)	534, 840, 932
PkrI	GCNGC	4 cut(s)	109, 454, 721, 818
Psp1406I	AACGTT	1 cut(s)	958
PspXI	VCTCGAGB	1 cut(s)	117
PteI	GCGCGC	1 cut(s)	97
RsaI	GTAC	3 cut(s)	115, 402, 923
RsaNI	GTAC	3 cut(s)	114, 401, 922
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	473
SatI	GCNGC	4 cut(s)	108, 453, 720, 817
Sau3AI	GATC	3 cut(s)	174, 350, 366
SduI	GDGCHC	2 cut(s)	256, 947
SfaNI	GCATC	1 cut(s)	351
Sfr274I	CTCGAG	1 cut(s)	117
SlaI	CTCGAG	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	160
SmlI	CTYRAG	4 cut(s)	92, 117, 378, 605
SmoI	CTYRAG	4 cut(s)	92, 117, 378, 605
SpeI	ACTAGT	1 cut(s)	520
Sse9I	AATT	7 cut(s)	202, 360, 394, 585, 685, 723, 976
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	5 cut(s)	35, 149, 467, 521, 774
TaaI	ACNGT	6 cut(s)	562, 655, 681, 850, 913, 996
TaiI	ACGT	2 cut(s)	450, 961
TaqI	TCGA	2 cut(s)	47, 118
TasI	AATT	7 cut(s)	202, 360, 394, 585, 685, 723, 976
TatI	WGTACW	1 cut(s)	400
TfiI	GAWTC	3 cut(s)	534, 840, 932
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TscAI	CASTG	4 cut(s)	261, 277, 360, 853
TseI	GCWGC	4 cut(s)	107, 452, 719, 816
TspDTI	ATGAA	5 cut(s)	46, 61, 832, 953, 969
TspRI	CASTG	4 cut(s)	261, 277, 360, 853
VneI	GTGCAC	1 cut(s)	252
XagI	CCTNNNNNAGG	1 cut(s)	695
XapI	RAATTY	1 cut(s)	394
XhoI	CTCGAG	1 cut(s)	117
XmiI	GTMKAC	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	538
XspI	CTAG	5 cut(s)	35, 149, 467, 521, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.