Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000984

Physical Location & Seq

Genomic Coordinates Reverse (-)

1533512 .. 1537726

Gene Structure 4215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g01760.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGTGTTTCGGAGAACACGATAGGTCTGATACTAGCCATGGCCTCCAGCGCCTTCATCGGCTCCAGCTTCATCTTGAAGAAGAAAGGCCTCAAGCGCGCCGGCGCCGCCGGAATCCGAGCAGGTGTTGGTGGTTATACTTATTTGTTAGAGCCATTATGGTGGGCCGGCATGATCACCATGATTGTTGGAGAGGTTGCGAATTTCGTTGCTTATGTATATGCGCCGGCGGTTCTTGTGACTCCACTAGGTGCATTGAGTATTATAGTCAGGCTGCAGAAAATGGGAGTTGTGGGATGTGTTACGTGCATTGTGGGATCAGTGGTTATTGTGATCCATGCGCCGCAGGAGCATACGCTGAATTCTGTACAGGAAATATGGAGTCTTGCGACTCAACCAGCCTTTCTAATTTATGTTGCAGCCACACTTTCCCTAGTGTTAGCTTTGGTTCTGCATTTTGAACCTCGCTATGGGCTGACAAACATACTAGTCTACTTGGGAATCTGTTCTTTGATGGGTTCACTTACGGTTGTAAGCATAAAGGCCATTGGAATTGCAATAAAGCTTACTCTTGAGGGAGTAAGTCAAATAGCTTATCCGCAGACTTGGTTTTTTCTGACTGTTTCAGTGATCTGCGTCGTTACACAGTTGAATTACCTCAACAAGGCTTTGGATACCTTCAGTGCAACTATTGTTGCTCCAGTATATTATGTGATGTTCACAACTCTCACCATTATTGCTAGCGTAATAATGTTCAAGGATTGGTCTGGTCAGACTGCGAGCAGCATAGCCTCTGAAATTTGTGGATTCATTACTGTACTGTCAGGAACCATTATACTCCATGCCACTAGAGATCAGGAACCGCCTCCTCCACAAGGAACTGTAACATGGTACATTAACGGAGATTCAATGAAGGCTTCTGAAGATGAAGATTTGATTGCCTTTCGCAATTCAGATTTTCTTGAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051607 GO:0051704 GO:0051707 GO:0070838 GO:0071944 GO:0072511 GO:0097708 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

324

Amino Acids

34.68

Weight (kDa)

5.8

Isoelectric Point (pI)

25.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	57 - 272	1.2e-91	Magnesium transporter NIPA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21120 AT4G38730
fragaria_vesca	FvH4_1g25650 FvH4_1g25650 FvH4_1g25650 FvH4_2g01760 FvH4_2g01760 FvH4_2g01760
malus_domestica	MD00G1128200.v1.1 MD03G1168400.v1.1 MD05G1116700.v1.1 MD10G1119800.v1.1 MD15G1139500.v1.1
prunus_persica	Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.8G161200_v2.0.a1 Prupe.8G161200_v2.0.a1
pyrus_communis	pycom03g12470 pycom05g11100 pycom10g10320 pycom15g12590 pycom520g00770
rosa_chinensis	RchiOBHm_Chr2g0124131 RchiOBHm_Chr5g0050741 RchiOBHm_Chr6g0244791
rosa_laevigata	RLG00000015328 RLG00000018785 RLG00000034727
rosa_multiflora	Rmu_sc0002064.1_g000008 Rmu_sc0002117.1_g000013 Rmu_sc0008812.1_g000003 Rmu_sc0036275.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120110 Rroxscaffold_7G00215490
rosa_rugosa	Rorug05G0263300 Rorug05G0263400 Rorug05G0263500 Rorug05G0510800.1 Rorug05G0510900
rosa_samantha	Rh2AG307700 Rh2BG316700 Rh5BG344900 Rh5CG372800 Rh5DG358000 Rh6BG021600
rosa_wichuraiana	Rw2G024800 Rw5G031660 Rw6G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	113
Acc36I	ACCTGC	1 cut(s)	113
AccB1I	GGYRCC	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	492
AccII	CGCG	1 cut(s)	99
AciI	CCGC	5 cut(s)	108, 230, 344, 599, 863
AclWI	GGATC	2 cut(s)	325, 328
AcsI	RAATTY	3 cut(s)	202, 361, 798
AcuI	CTGAAG	2 cut(s)	664, 942
AcyI	GRCGYC	1 cut(s)	105
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	3 cut(s)	369, 819, 893
AfiI	CCNNNNNNNGG	3 cut(s)	470, 664, 875
AgsI	TTSAA	6 cut(s)	79, 461, 652, 757, 909, 965
AhlI	ACTAGT	1 cut(s)	487
AluBI	AGCT	4 cut(s)	69, 443, 565, 593
AluI	AGCT	4 cut(s)	69, 443, 565, 593
AlwI	GGATC	2 cut(s)	325, 328
AoxI	GGCC	4 cut(s)	42, 88, 165, 543
ApeKI	GCWGC	3 cut(s)	274, 419, 783
ApoI	RAATTY	3 cut(s)	202, 361, 798
Asp700I	GAANNNNTTC	1 cut(s)	505
AspLEI	GCGC	6 cut(s)	53, 99, 101, 107, 226, 343
AspS9I	GGNCC	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	169, 721
AsuNHI	GCTAGC	1 cut(s)	740
BanI	GGYRCC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	261, 431, 795
BccI	CCATC	1 cut(s)	508
BciVI	GTATCC	1 cut(s)	667
BclI	TGATCA	1 cut(s)	174
BcuI	ACTAGT	1 cut(s)	487
BfaI	CTAG	6 cut(s)	35, 248, 434, 488, 741, 849
BfmI	CTRYAG	1 cut(s)	275
BfoI	RGCGCY	2 cut(s)	54, 108
BfuAI	ACCTGC	1 cut(s)	113
BfuI	GTATCC	1 cut(s)	667
BisI	GCNGC	5 cut(s)	108, 275, 344, 420, 784
BlsI	GCNGC	5 cut(s)	109, 276, 345, 421, 785
BmgT120I	GGNCC	1 cut(s)	165
BmiI	GGNNCC	4 cut(s)	64, 106, 829, 861
BmtI	GCTAGC	1 cut(s)	744
BpmI	CTGGAG	3 cut(s)	31, 49, 684
BpuEI	CTTGAG	2 cut(s)	77, 593
BsaAI	YACGTR	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	3 cut(s)	470, 664, 875
Bse118I	RCCGGY	3 cut(s)	101, 167, 226
Bse1I	ACTGG	1 cut(s)	701
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	302
BseLI	CCNNNNNNNGG	3 cut(s)	470, 664, 875
BseNI	ACTGG	1 cut(s)	701
BsePI	GCGCGC	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	858
BseXI	GCAGC	3 cut(s)	261, 431, 795
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	4 cut(s)	44, 90, 167, 545
BshNI	GGYRCC	1 cut(s)	104
BsiSI	CCGG	4 cut(s)	102, 111, 168, 227
BslI	CCNNNNNNNGG	3 cut(s)	470, 664, 875
BsnI	GGCC	4 cut(s)	44, 90, 167, 545
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	5 cut(s)	174, 317, 333, 630, 853
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	5 cut(s)	108, 230, 344, 599, 863
BspANI	GGCC	4 cut(s)	44, 90, 167, 545
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	4 cut(s)	64, 106, 829, 861
BspMAI	CTGCAG	1 cut(s)	279
BspMI	ACCTGC	1 cut(s)	113
BspOI	GCTAGC	1 cut(s)	744
BspPI	GGATC	2 cut(s)	325, 328
BspT107I	GGYRCC	1 cut(s)	104
BsrFI	RCCGGY	3 cut(s)	101, 167, 226
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	701
BssAI	RCCGGY	3 cut(s)	101, 167, 226
BssECI	CCNNGG	1 cut(s)	39
BssHII	GCGCGC	1 cut(s)	97
BssMI	GATC	5 cut(s)	174, 317, 333, 630, 853
BssNI	GRCGYC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	6 cut(s)	529, 622, 648, 817, 822, 883
BstACI	GRCGYC	1 cut(s)	105
BstAUI	TGTACA	1 cut(s)	367
BstBAI	YACGTR	1 cut(s)	306
BstC8I	GCNNGC	6 cut(s)	99, 103, 169, 228, 742, 781
BstDSI	CCRYGG	1 cut(s)	39
BstENI	CCTNNNNNAGG	2 cut(s)	662, 873
BstF5I	GGATG	1 cut(s)	302
BstFNI	CGCG	1 cut(s)	99
BstH2I	RGCGCY	2 cut(s)	54, 108
BstHHI	GCGC	6 cut(s)	53, 99, 101, 107, 226, 343
BstKTI	GATC	5 cut(s)	177, 320, 336, 633, 856
BstMBI	GATC	5 cut(s)	174, 317, 333, 630, 853
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 96, 107, 349
BstSFI	CTRYAG	1 cut(s)	275
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	3 cut(s)	261, 431, 795
BstXI	CCANNNNNNTGG	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	667
BsuRI	GGCC	4 cut(s)	44, 90, 167, 545
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	302
BtsIMutI	CAGTG	3 cut(s)	327, 633, 688
BveI	ACCTGC	1 cut(s)	113
Cac8I	GCNNGC	6 cut(s)	99, 103, 169, 228, 742, 781
CfoI	GCGC	6 cut(s)	53, 99, 101, 107, 226, 343
Cfr10I	RCCGGY	3 cut(s)	101, 167, 226
Cfr13I	GGNCC	1 cut(s)	165
CseI	GACGC	1 cut(s)	625
Csp6I	GTAC	3 cut(s)	368, 818, 892
CviAII	CATG	6 cut(s)	40, 172, 181, 338, 842, 888
CviQI	GTAC	3 cut(s)	368, 818, 892
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	5 cut(s)	176, 319, 335, 632, 855
DpnII	GATC	5 cut(s)	174, 317, 333, 630, 853
DraIII	CACNNNGTG	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	39
Eco147I	AGGCCT	1 cut(s)	90
Eco57I	CTGAAG	2 cut(s)	664, 942
EcoNI	CCTNNNNNAGG	2 cut(s)	662, 873
EcoRI	GAATTC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	39
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	6 cut(s)	43, 175, 184, 341, 845, 891
FatI	CATG	6 cut(s)	39, 171, 180, 337, 841, 887
FbaI	TGATCA	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	492
Fnu4HI	GCNGC	5 cut(s)	108, 275, 344, 420, 784
FokI	GGATG	1 cut(s)	309
Fsp4HI	GCNGC	5 cut(s)	108, 275, 344, 420, 784
FspBI	CTAG	6 cut(s)	35, 248, 434, 488, 741, 849
GlaI	GCGC	6 cut(s)	52, 98, 100, 106, 225, 342
GluI	GCNGC	5 cut(s)	108, 275, 344, 420, 784
GsuI	CTGGAG	3 cut(s)	31, 49, 684
HaeII	RGCGCY	2 cut(s)	54, 108
HaeIII	GGCC	4 cut(s)	44, 90, 167, 545
HapII	CCGG	4 cut(s)	102, 111, 168, 227
HgaI	GACGC	1 cut(s)	625
HhaI	GCGC	6 cut(s)	53, 99, 101, 107, 226, 343
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	6 cut(s)	43, 175, 184, 341, 845, 891
Hin6I	GCGC	6 cut(s)	51, 97, 99, 105, 224, 341
HinP1I	GCGC	6 cut(s)	51, 97, 99, 105, 224, 341
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	7 cut(s)	114, 241, 382, 391, 501, 807, 905
HpaII	CCGG	4 cut(s)	102, 111, 168, 227
HphI	GGTGA	2 cut(s)	169, 721
Hpy166II	GTNNAC	3 cut(s)	493, 521, 720
Hpy188I	TCNGA	8 cut(s)	13, 30, 119, 618, 774, 796, 922, 955
Hpy188III	TCNNGA	5 cut(s)	76, 572, 825, 857, 962
Hpy8I	GTNNAC	3 cut(s)	493, 521, 720
Hpy99I	CGWCG	1 cut(s)	641
HpyAV	CCTTC	3 cut(s)	64, 688, 907
HpyCH4III	ACNGT	6 cut(s)	529, 622, 648, 817, 822, 883
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	7 cut(s)	254, 277, 309, 419, 454, 557, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 96, 107, 349
HpySE526I	ACGT	1 cut(s)	305
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	6 cut(s)	43, 175, 184, 341, 845, 891
HspAI	GCGC	6 cut(s)	51, 97, 99, 105, 224, 341
KasI	GGCGCC	1 cut(s)	104
KroI	GCCGGC	3 cut(s)	101, 167, 226
KroNI	GCCGGC	3 cut(s)	103, 169, 228
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	5 cut(s)	174, 317, 333, 630, 853
LmnI	GCTCC	3 cut(s)	68, 349, 703
Lsp1109I	GCAGC	3 cut(s)	261, 431, 795
MaeI	CTAG	6 cut(s)	35, 248, 434, 488, 741, 849
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	4 cut(s)	238, 301, 640, 883
MalI	GATC	5 cut(s)	176, 319, 335, 632, 855
MboI	GATC	5 cut(s)	174, 317, 333, 630, 853
MboII	GAAGA	4 cut(s)	91, 94, 935, 941
MluCI	AATT	7 cut(s)	202, 361, 408, 552, 652, 798, 949
Mly113I	GGCGCC	1 cut(s)	105
MlyI	GAGTC	3 cut(s)	235, 385, 391
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	9 cut(s)	55, 101, 187, 474, 568, 668, 802, 876, 879
MreI	CGCCGGCG	2 cut(s)	101, 226
MroNI	GCCGGC	3 cut(s)	101, 167, 226
MroXI	GAANNNNTTC	1 cut(s)	505
MseI	TTAA	1 cut(s)	897
MslI	CAYNNNNRTG	1 cut(s)	160
MspI	CCGG	4 cut(s)	102, 111, 168, 227
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	4 cut(s)	50, 96, 107, 349
NaeI	GCCGGC	3 cut(s)	103, 169, 228
NarI	GGCGCC	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	5 cut(s)	174, 317, 333, 630, 853
NgoMIV	GCCGGC	3 cut(s)	101, 167, 226
NheI	GCTAGC	1 cut(s)	740
NlaIII	CATG	6 cut(s)	43, 175, 184, 341, 845, 891
NlaIV	GGNNCC	4 cut(s)	64, 106, 829, 861
NmuCI	GTSAC	1 cut(s)	238
PaqCI	CACCTGC	1 cut(s)	113
PauI	GCGCGC	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PdiI	GCCGGC	3 cut(s)	103, 169, 228
PdmI	GAANNNNTTC	1 cut(s)	505
PfeI	GAWTC	4 cut(s)	114, 501, 807, 905
PkrI	GCNGC	5 cut(s)	109, 276, 345, 421, 785
PleI	GAGTC	3 cut(s)	235, 385, 390
PluTI	GGCGCC	1 cut(s)	108
PpsI	GAGTC	3 cut(s)	235, 385, 390
Ppu21I	YACGTR	1 cut(s)	306
PspN4I	GGNNCC	4 cut(s)	64, 106, 829, 861
PspPI	GGNCC	1 cut(s)	165
PstI	CTGCAG	1 cut(s)	279
PteI	GCGCGC	1 cut(s)	97
RsaI	GTAC	3 cut(s)	369, 819, 893
RsaNI	GTAC	3 cut(s)	368, 818, 892
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	897
SatI	GCNGC	5 cut(s)	108, 275, 344, 420, 784
Sau3AI	GATC	5 cut(s)	174, 317, 333, 630, 853
Sau96I	GGNCC	1 cut(s)	165
SchI	GAGTC	3 cut(s)	235, 385, 391
SfcI	CTRYAG	1 cut(s)	275
SfoI	GGCGCC	1 cut(s)	106
SgrAI	CRCCGGYG	2 cut(s)	101, 226
SmiMI	CAYNNNNRTG	1 cut(s)	160
SmlI	CTYRAG	2 cut(s)	92, 572
SmoI	CTYRAG	2 cut(s)	92, 572
SpeI	ACTAGT	1 cut(s)	487
Sse9I	AATT	7 cut(s)	202, 361, 408, 552, 652, 798, 949
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	5 cut(s)	108, 230, 344, 599, 863
SspDI	GGCGCC	1 cut(s)	104
SspMI	CTAG	6 cut(s)	35, 248, 434, 488, 741, 849
StuI	AGGCCT	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	6 cut(s)	529, 622, 648, 817, 822, 883
TaiI	ACGT	1 cut(s)	308
TasI	AATT	7 cut(s)	202, 361, 408, 552, 652, 798, 949
TatI	WGTACW	2 cut(s)	367, 817
TauI	GCSGC	2 cut(s)	110, 346
TfiI	GAWTC	4 cut(s)	114, 501, 807, 905
Tru1I	TTAA	1 cut(s)	897
Tru9I	TTAA	1 cut(s)	897
TscAI	CASTG	3 cut(s)	327, 633, 688
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	3 cut(s)	274, 419, 783
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	5 cut(s)	46, 61, 799, 926, 942
TspGWI	ACGGA	1 cut(s)	915
TspRI	CASTG	3 cut(s)	327, 633, 688
XagI	CCTNNNNNAGG	2 cut(s)	662, 873
XapI	RAATTY	3 cut(s)	202, 361, 798
XmiI	GTMKAC	1 cut(s)	492
XmnI	GAANNNNTTC	1 cut(s)	505
XspI	CTAG	6 cut(s)	35, 248, 434, 488, 741, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.