Rw5G031660

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
52459631 .. 52466053
6423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G031660.1

Sequence Viewer

Length: 1053 bp
ATGGGTTTCTCCAAAGACAATCTTAAAGGCCTTCTTCTAGCTCTCCTATCAAGTGGGTTCATAGGGGCAAGCTTCATCATCAAGAAAAAAGGCCTCCGAAGAGCCGCAGCTGCTTCTGGGGTCAGAGCTGGCTATGGTGGGTATTCTTATCTCTTGGAGCCTCTGTGGTGGCTGGGATTGATAACAATGATTGTGGGAGAGGTTGCGAATTTCATTGCATATGCATTTGCTCCAGCAGTGCTTGTTACCCCTCTTGGTGCATTAAGTATAATTATCAGTGCTGTGCTGGCTCATTTTATCTTGAAGGAGAGGTTGCACTGGCTTGGGGTTTTGGGCTGTGTAATGTGCATTTCTGGATCGGTCATAATTGTTATCCATGCACCACAGGAGCATCCTATCACGAATGTTCTTGAAATATGGAGTATGGCAACTCAACCAGCTTTCATGCTTTATGTGGGCTCGGTGATTGTTCTGGTTTTCATACTAATCTTCCATTTTGTGCCACGATGTGGGCAAACAAATGTGCTAGTTTTCACTGGCATTTGTTCATTGATGGGTTCTCTATCAGTAATGAGTGTTAAAGCCCTAGGAACTGCTCTAAAATTAACTTTTGAGGGAAAGAATCAGTTAATCTATCCAGAGACATGGTTTTTTATGTTGGTTGTAACTACATGTGTCATCACTCAGATGAACTATCTGAACAAGGCGCTTGATACATTCAACACAGCTGTCGTGTCCCCCATTTATTATGTCATGTTTACGACACTGGCAATTATCGCTAGTGTCATAATGTTTAAGGATTGGGATGACCAGAGTGGAGGAGCGATCATATCAGAAATATGTGGCTTTATTGTTGTATTATCTGGAACCATCTTATTGCATTCAACAAAAGAATTTGAGAGAAGCTCATCCTTTAAAGGTAGCTATATGTCTGTATCCCCTTCATTATCTGCACCTCTATGTAGTGGGAATGGAGACTCATTGAAACACGGTGAAAATGAAGAAGAGTCGTTTTCTGAGGAAATTTCATTAAGAAGACAAGAATTGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

350

Amino Acids

38.14

Weight (kDa)

6.65

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mg_trans_NIPA PF05653 6 - 298 6.9e-132 Magnesium transporter NIPA
EamA PF00892 9 - 124 1.9e-06 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 509
AciI CCGC 1 cut(s) 105
AclWI GGATC 1 cut(s) 364
AcsI RAATTY 3 cut(s) 208, 893, 1023
AdeI CACNNNGTG 1 cut(s) 509
AfaI GTAC 1 cut(s) 1049
AfiI CCNNNNNNNGG 1 cut(s) 509
AflIII ACRYGT 1 cut(s) 671
AgsI TTSAA 5 cut(s) 304, 413, 721, 885, 985
AluBI AGCT 8 cut(s) 41, 72, 110, 128, 440, 728, 906, 924
AluI AGCT 8 cut(s) 41, 72, 110, 128, 440, 728, 906, 924
Alw26I GTCTC 2 cut(s) 635, 969
AlwI GGATC 1 cut(s) 364
AoxI GGCC 2 cut(s) 28, 91
ApeKI GCWGC 2 cut(s) 107, 110
ApoI RAATTY 3 cut(s) 208, 893, 1023
AspA2I CCTAGG 1 cut(s) 586
AspLEI GCGC 1 cut(s) 709
AsuHPI GGTGA 2 cut(s) 475, 1004
AvrII CCTAGG 1 cut(s) 586
BanII GRGCYC 1 cut(s) 461
BbsI GAAGAC 1 cut(s) 1042
BbvI GCAGC 2 cut(s) 97, 119
BccI CCATC 2 cut(s) 547, 878
BciVI GTATCC 1 cut(s) 946
BcoDI GTCTC 2 cut(s) 635, 969
BfaI CTAG 5 cut(s) 38, 527, 587, 780, 1051
BfoI RGCGCY 1 cut(s) 710
BfuI GTATCC 1 cut(s) 946
BisI GCNGC 3 cut(s) 105, 108, 111
BlnI CCTAGG 1 cut(s) 586
BlsI GCNGC 3 cut(s) 106, 109, 112
BmiI GGNNCC 2 cut(s) 159, 868
BmsI GCATC 1 cut(s) 400
BpiI GAAGAC 1 cut(s) 1042
BplI GAGNNNNNCTC 2 cut(s) 890, 922
BpmI CTGGAG 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 586
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse1I ACTGG 3 cut(s) 323, 541, 771
Bse3DI GCAATG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 586
BseGI GGATG 3 cut(s) 391, 811, 908
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 698, 1008
BseNI ACTGG 3 cut(s) 323, 541, 771
BseRI GAGGAG 1 cut(s) 834
BseXI GCAGC 2 cut(s) 97, 119
BseYI CCCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 936
BshFI GGCC 2 cut(s) 30, 93
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 1 cut(s) 509
BsmAI GTCTC 2 cut(s) 635, 969
BsmFI GGGAC 1 cut(s) 721
BsmI GAATGC 1 cut(s) 880
BsnI GGCC 2 cut(s) 30, 93
Bsp1286I GDGCHC 1 cut(s) 461
Bsp143I GATC 2 cut(s) 356, 825
BspACI CCGC 1 cut(s) 105
BspANI GGCC 2 cut(s) 30, 93
BspCNI CTCAG 2 cut(s) 697, 1009
BspLI GGNNCC 2 cut(s) 159, 868
BspPI GGATC 1 cut(s) 364
BspQI GCTCTTC 1 cut(s) 94
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 3 cut(s) 323, 541, 771
BssECI CCNNGG 1 cut(s) 586
BssMI GATC 2 cut(s) 356, 825
BssT1I CCWWGG 1 cut(s) 586
Bst4CI ACNGT 1 cut(s) 992
Bst6I CTCTTC 2 cut(s) 94, 999
BstC8I GCNNGC 3 cut(s) 70, 130, 288
BstDEI CTNAG 2 cut(s) 684, 1017
BstF5I GGATG 3 cut(s) 391, 811, 908
BstH2I RGCGCY 1 cut(s) 710
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 2 cut(s) 359, 828
BstMAI GTCTC 2 cut(s) 635, 969
BstMBI GATC 2 cut(s) 356, 825
BstMWI GCNNNNNNNGC 3 cut(s) 110, 287, 776
BstNSI RCATGY 1 cut(s) 675
BstV1I GCAGC 2 cut(s) 97, 119
BstV2I GAAGAC 1 cut(s) 1042
BstXI CCANNNNNNTGG 1 cut(s) 645
BsuI GTATCC 1 cut(s) 946
BsuRI GGCC 2 cut(s) 30, 93
BtsCI GGATG 3 cut(s) 391, 811, 908
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 5 cut(s) 243, 283, 316, 534, 764
Cac8I GCNNGC 3 cut(s) 70, 130, 288
CfoI GCGC 1 cut(s) 709
Csp6I GTAC 1 cut(s) 1048
CspCI CAANNNNNGTGG 2 cut(s) 174, 209
CviAII CATG 5 cut(s) 377, 445, 645, 672, 754
CviQI GTAC 1 cut(s) 1048
DdeI CTNAG 2 cut(s) 684, 1017
DpnI GATC 2 cut(s) 358, 827
DpnII GATC 2 cut(s) 356, 825
DraI TTTAAA 1 cut(s) 916
DraIII CACNNNGTG 1 cut(s) 509
Eam1104I CTCTTC 2 cut(s) 94, 999
EarI CTCTTC 2 cut(s) 94, 999
Eco130I CCWWGG 1 cut(s) 586
Eco147I AGGCCT 2 cut(s) 30, 93
Eco24I GRGCYC 1 cut(s) 461
EcoT14I CCWWGG 1 cut(s) 586
EcoT22I ATGCAT 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 461
ErhI CCWWGG 1 cut(s) 586
FaeI CATG 5 cut(s) 380, 448, 648, 675, 757
FalI AAGNNNNNCTT 3 cut(s) 38, 18, 50
FaqI GGGAC 1 cut(s) 721
FatI CATG 5 cut(s) 376, 444, 644, 671, 753
FauNDI CATATG 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 105, 108, 111
FokI GGATG 3 cut(s) 378, 818, 895
FriOI GRGCYC 1 cut(s) 461
Fsp4HI GCNGC 3 cut(s) 105, 108, 111
FspBI CTAG 5 cut(s) 38, 527, 587, 780, 1051
GlaI GCGC 1 cut(s) 708
GluI GCNGC 3 cut(s) 105, 108, 111
GsaI CCCAGC 1 cut(s) 176
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 710
HaeIII GGCC 2 cut(s) 30, 93
HhaI GCGC 1 cut(s) 709
Hin1II CATG 5 cut(s) 380, 448, 648, 675, 757
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HindIII AAGCTT 1 cut(s) 70
HinfI GANTC 3 cut(s) 622, 977, 1007
HphI GGTGA 2 cut(s) 475, 1004
Hpy166II GTNNAC 1 cut(s) 759
Hpy188I TCNGA 6 cut(s) 98, 125, 687, 699, 835, 1018
Hpy188III TCNNGA 7 cut(s) 82, 301, 354, 400, 410, 638, 864
Hpy8I GTNNAC 1 cut(s) 759
HpyAV CCTTC 3 cut(s) 41, 298, 951
HpyCH4III ACNGT 1 cut(s) 992
HpyCH4V TGCA 8 cut(s) 218, 224, 260, 316, 348, 380, 880, 953
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 287, 776
HpyF3I CTNAG 2 cut(s) 684, 1017
Hsp92II CATG 5 cut(s) 380, 448, 648, 675, 757
HspAI GCGC 1 cut(s) 707
Kzo9I GATC 2 cut(s) 356, 825
LguI GCTCTTC 1 cut(s) 94
LmnI GCTCC 4 cut(s) 157, 235, 388, 821
Lsp1109I GCAGC 2 cut(s) 97, 119
LweI GCATC 1 cut(s) 400
MaeI CTAG 5 cut(s) 38, 527, 587, 780, 1051
MaeIII GTNAC 2 cut(s) 244, 664
MalI GATC 2 cut(s) 358, 827
MboI GATC 2 cut(s) 356, 825
MboII GAAGA 6 cut(s) 26, 111, 481, 1013, 1016, 1047
MhlI GDGCHC 1 cut(s) 461
MluCI AATT 8 cut(s) 208, 270, 366, 602, 771, 893, 1023, 1043
MlyI GAGTC 2 cut(s) 971, 1016
MnlI CCTC 9 cut(s) 104, 171, 193, 261, 303, 607, 812, 966, 1012
Mph1103I ATGCAT 1 cut(s) 226
MseI TTAA 8 cut(s) 24, 263, 579, 605, 629, 795, 915, 1031
MslI CAYNNNNRTG 2 cut(s) 686, 958
MspA1I CMGCKG 2 cut(s) 110, 728
Mva1269I GAATGC 1 cut(s) 880
MwoI GCNNNNNNNGC 3 cut(s) 110, 287, 776
NdeI CATATG 1 cut(s) 220
NdeII GATC 2 cut(s) 356, 825
NlaIII CATG 5 cut(s) 380, 448, 648, 675, 757
NlaIV GGNNCC 2 cut(s) 159, 868
NsiI ATGCAT 1 cut(s) 226
NspI RCATGY 1 cut(s) 675
PceI AGGCCT 2 cut(s) 30, 93
PciI ACATGT 1 cut(s) 671
PciSI GCTCTTC 1 cut(s) 94
PctI GAATGC 1 cut(s) 880
PfeI GAWTC 1 cut(s) 622
PflMI CCANNNNNTGG 1 cut(s) 509
PkrI GCNGC 3 cut(s) 106, 109, 112
PleI GAGTC 2 cut(s) 971, 1015
PpsI GAGTC 2 cut(s) 971, 1015
PscI ACATGT 1 cut(s) 671
PspFI CCCAGC 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 159, 868
PvuII CAGCTG 2 cut(s) 110, 728
RsaI GTAC 1 cut(s) 1049
RsaNI GTAC 1 cut(s) 1048
RseI CAYNNNNRTG 2 cut(s) 686, 958
SapI GCTCTTC 1 cut(s) 94
SaqAI TTAA 8 cut(s) 24, 263, 579, 605, 629, 795, 915, 1031
SatI GCNGC 3 cut(s) 105, 108, 111
Sau3AI GATC 2 cut(s) 356, 825
SchI GAGTC 2 cut(s) 971, 1016
SduI GDGCHC 1 cut(s) 461
SfaNI GCATC 1 cut(s) 400
SmiMI CAYNNNNRTG 2 cut(s) 686, 958
Sse9I AATT 8 cut(s) 208, 270, 366, 602, 771, 893, 1023, 1043
SseBI AGGCCT 2 cut(s) 30, 93
SsiI CCGC 1 cut(s) 105
SspMI CTAG 5 cut(s) 38, 527, 587, 780, 1051
StuI AGGCCT 2 cut(s) 30, 93
StyI CCWWGG 1 cut(s) 586
TaaI ACNGT 1 cut(s) 992
TaqII GACCGA 1 cut(s) 349
TasI AATT 8 cut(s) 208, 270, 366, 602, 771, 893, 1023, 1043
TatI WGTACW 1 cut(s) 1047
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 1 cut(s) 622
Tru1I TTAA 8 cut(s) 24, 263, 579, 605, 629, 795, 915, 1031
Tru9I TTAA 8 cut(s) 24, 263, 579, 605, 629, 795, 915, 1031
TscAI CASTG 5 cut(s) 243, 283, 323, 541, 771
TseI GCWGC 2 cut(s) 107, 110
TspRI CASTG 5 cut(s) 243, 283, 323, 541, 771
Van91I CCANNNNNTGG 1 cut(s) 509
XapI RAATTY 3 cut(s) 208, 893, 1023
XceI RCATGY 1 cut(s) 675
XmaJI CCTAGG 1 cut(s) 586
XspI CTAG 5 cut(s) 38, 527, 587, 780, 1051
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.