Rorug05G0263400

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
29900844 .. 29902666
1823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0263400.1

Sequence Viewer

Length: 327 bp
ATGATCAAGTGTGCATATGACAGAGGAGTAACGTTCTTCGATACATCTGATGTTTATGGAGCACATGCTAATGAAGTTTTGATTGAAAAGGTCATGGAGCAAGCCACTGATGTAGAGAAAGCAACGGTTGTGTTTGAGTTTCTTGATTTCAAGCGCAGGAACAAGGCACTCATTGGTCTTATAAATGCTCTAAGGCAGTGGTTTGGAAAGGCATATCTAATATTGATACTTGCAATTGGAAGCATGTTATACCACACTATATTGCAGCACGTGGCCATTCAAGCAATAAAGAGCTTATTTGAGCAAGTGAGCTGCAACATGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.34

Weight (kDa)

7.8

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 182
AclI AACGTT 1 cut(s) 32
AcoI YGGCCR 1 cut(s) 273
AcvI CACGTG 1 cut(s) 271
AgsI TTSAA 3 cut(s) 86, 151, 281
AluBI AGCT 2 cut(s) 294, 312
AluI AGCT 2 cut(s) 294, 312
Alw21I GWGCWC 1 cut(s) 64
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 2 cut(s) 265, 312
AspLEI GCGC 1 cut(s) 156
BalI TGGCCA 1 cut(s) 275
BbrPI CACGTG 1 cut(s) 271
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 2 cut(s) 277, 299
BclI TGATCA 1 cut(s) 3
BisI GCNGC 2 cut(s) 266, 313
BlsI GCNGC 2 cut(s) 267, 314
BsaAI YACGTR 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 277, 299
BshFI GGCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 64
BsnI GGCC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 3
BspANI GGCC 1 cut(s) 275
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 1 cut(s) 127
BstBAI YACGTR 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 191
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNSI RCATGY 2 cut(s) 68, 247
BstV1I GCAGC 2 cut(s) 277, 299
BsuRI GGCC 1 cut(s) 275
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 2 cut(s) 105, 203
Cac8I GCNNGC 1 cut(s) 102
CfoI GCGC 1 cut(s) 156
CviAII CATG 4 cut(s) 65, 94, 244, 319
CviJI RGCY 4 cut(s) 104, 275, 294, 312
CviKI_1 RGCY 4 cut(s) 104, 275, 294, 312
DdeI CTNAG 1 cut(s) 191
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 1 cut(s) 273
Eco72I CACGTG 1 cut(s) 271
FaeI CATG 4 cut(s) 68, 97, 247, 322
FatI CATG 4 cut(s) 64, 93, 243, 318
FauNDI CATATG 1 cut(s) 16
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 266, 313
Fsp4HI GCNGC 2 cut(s) 266, 313
GlaI GCGC 1 cut(s) 155
GluI GCNGC 2 cut(s) 266, 313
HaeIII GGCC 1 cut(s) 275
HhaI GCGC 1 cut(s) 156
Hin1II CATG 4 cut(s) 68, 97, 247, 322
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 2 cut(s) 32, 270
HpyCH4V TGCA 4 cut(s) 14, 233, 265, 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 191
HpySE526I ACGT 2 cut(s) 32, 270
Hsp92II CATG 4 cut(s) 68, 97, 247, 322
HspAI GCGC 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 59, 97
LpnPI CCDG 1 cut(s) 142
Lsp1109I GCAGC 2 cut(s) 277, 299
MaeII ACGT 2 cut(s) 32, 270
MaeIII GTNAC 1 cut(s) 28
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 28
MfeI CAATTG 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 64
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 1 cut(s) 234
MluNI TGGCCA 1 cut(s) 275
MnlI CCTC 1 cut(s) 17
Mox20I TGGCCA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 275
MslI CAYNNNNRTG 1 cut(s) 69
Msp20I TGGCCA 1 cut(s) 275
MunI CAATTG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeI CATATG 1 cut(s) 16
NdeII GATC 1 cut(s) 3
NlaIII CATG 4 cut(s) 68, 97, 247, 322
NspI RCATGY 2 cut(s) 68, 247
PkrI GCNGC 2 cut(s) 267, 314
PmaCI CACGTG 1 cut(s) 271
PmlI CACGTG 1 cut(s) 271
Ppu21I YACGTR 1 cut(s) 271
PsiI TTATAA 1 cut(s) 182
Psp1406I AACGTT 1 cut(s) 32
PspCI CACGTG 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 69
SatI GCNGC 2 cut(s) 266, 313
Sau3AI GATC 1 cut(s) 3
SduI GDGCHC 1 cut(s) 64
SetI ASST 5 cut(s) 35, 93, 273, 296, 314
SmiMI CAYNNNNRTG 1 cut(s) 69
Sse9I AATT 1 cut(s) 234
SspI AATATT 1 cut(s) 222
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 2 cut(s) 35, 273
TaqI TCGA 1 cut(s) 39
TasI AATT 1 cut(s) 234
TscAI CASTG 2 cut(s) 112, 203
TseI GCWGC 2 cut(s) 265, 312
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 2 cut(s) 112, 203
XceI RCATGY 2 cut(s) 68, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.