Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000984

Physical Location & Seq

Genomic Coordinates Forward (+)

64643844 .. 64648372

Gene Structure 4529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015328

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGGGGTGTCAGAGAATTCGATAGGTCTGATACTAGCCATGGCCTCCAGCGCCTTCATAGGCTCCAGCTTCATCTTGAAGAAGAAAGGCCTCAAGCGCGCCGCCGCAGCCGGAACTCGAGCAGGCGTTGGGGGCTATACTTATTTGTTAGAGCCATTATGGTGGGCGGGCATGATCACCATGATTGTTGGAGAGGTTGCGAATTTCATTGCTTATGTATATGCGCCGGCAGTTCTTGTAACTCCACTTGGTGCATTGAGTATAATAGTCAGTGCTGTCTTGGCGCACTTCTTGTTGAAGGAAAGGCTGCAGAAAATGGGGATTGTGGGATGTGTTACGTGCATTGTGGGATCAGTGGTTATTGTGATCCATGCGCCTCAGGAGCATACTCTGAGTTCTGTACTGGAAATATGGACTCTTGCGACTCAACCAGGCGCTTTGTTCCTTTATGTATCATGTGTTGTTGTAAGCATAAAGGCCATTGGAATTGCAATAAAGCTTACTCTTGAGGGAGTAAGTCAAATAGCTTATCCTCAGACTTGGTTTTTTCTGACCGTTGCAGTAATCTGCGTCGTTACACAGTTGAATTACCTCAACAAGGCTTTGGATACCTTCAGTGCAACTATTGTTGCTCCAGTATATTATGTGATGTTCACAACTCTGACCATTATTGCTAGTGTAATAATGTTCAAGGATTGGTCTGGTCAGGACGCGAGCAGCATAGCCTCTGAAATTTGTGGATTCATTACTGTACTGTCAGGAACCATTATACTCCATGCCACCAGAGATCAGGAACCACCTCCTCCGCAAGGAACTGTAACATGGTACATTAGTGGAGATTCAATGAAAGCTTCAGAAGATGAAGATTTGATTGCTTTACACGATTCAGATTTTCTTGAACCTGGCGCAGAGACATTTGCTGTGATATTGGCAATGTCTAATCTGTCTATGACGACTATTGGTATATGCACATATGGATGCTTGCAGTTTTCAGGGACAGTTCTTGTTGATGTATCATCAGTCAATAGCGCGTTATTAGAACAGAACCAAGAGGCATACTGGCCAATTACTCCGCAGCTACCGCTTGGCATTGTACATCTTGTATTCAACTCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051607 GO:0051704 GO:0051707 GO:0070838 GO:0071944 GO:0072511 GO:0097708 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

373

Amino Acids

39.8

Weight (kDa)

4.97

Isoelectric Point (pI)

27.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	6 - 155	6e-65	Magnesium transporter NIPA
SLC35F	PF06027	40 - 123	2.3e-06	Solute carrier family 35
Mg_trans_NIPA	PF05653	152 - 263	9.6e-46	Magnesium transporter NIPA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21120 AT4G38730
fragaria_vesca	FvH4_1g25650 FvH4_1g25650 FvH4_1g25650 FvH4_2g01760 FvH4_2g01760 FvH4_2g01760
malus_domestica	MD00G1128200.v1.1 MD03G1168400.v1.1 MD05G1116700.v1.1 MD10G1119800.v1.1 MD15G1139500.v1.1
prunus_persica	Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.8G161200_v2.0.a1 Prupe.8G161200_v2.0.a1
pyrus_communis	pycom03g12470 pycom05g11100 pycom10g10320 pycom15g12590 pycom520g00770
rosa_chinensis	RchiOBHm_Chr2g0124131 RchiOBHm_Chr5g0050741 RchiOBHm_Chr6g0244791
rosa_laevigata	RLG00000015328 RLG00000018785 RLG00000034727
rosa_multiflora	Rmu_sc0002064.1_g000008 Rmu_sc0002117.1_g000013 Rmu_sc0008812.1_g000003 Rmu_sc0036275.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120110 Rroxscaffold_7G00215490
rosa_rugosa	Rorug05G0263300 Rorug05G0263400 Rorug05G0263500 Rorug05G0510800.1 Rorug05G0510900
rosa_samantha	Rh2AG307700 Rh2BG316700 Rh5BG344900 Rh5CG372800 Rh5DG358000 Rh6BG021600
rosa_wichuraiana	Rw2G024800 Rw5G031660 Rw6G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	99, 713, 1031
AciI	CCGC	6 cut(s)	102, 105, 167, 806, 1073, 1082
AclWI	GGATC	2 cut(s)	358, 361
AcoI	YGGCCR	1 cut(s)	1061
AcsI	RAATTY	3 cut(s)	16, 202, 732
AcuI	CTGAAG	2 cut(s)	598, 837
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	4 cut(s)	402, 753, 827, 1095
AfiI	CCNNNNNNNGG	2 cut(s)	598, 809
AgsI	TTSAA	7 cut(s)	79, 298, 586, 691, 843, 899, 1108
AjnI	CCWGG	2 cut(s)	430, 901
AluBI	AGCT	5 cut(s)	69, 499, 527, 851, 1078
AluI	AGCT	5 cut(s)	69, 499, 527, 851, 1078
Alw26I	GTCTC	1 cut(s)	905
AlwI	GGATC	2 cut(s)	358, 361
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	4 cut(s)	42, 88, 477, 1061
ApeKI	GCWGC	4 cut(s)	107, 307, 717, 1075
ApoI	RAATTY	3 cut(s)	16, 202, 732
AspLEI	GCGC	9 cut(s)	53, 99, 101, 226, 286, 376, 437, 908, 1031
AsuHPI	GGTGA	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	117
AxyI	CCTNAGG	1 cut(s)	378
BaeI	ACNNNNGTAYC	2 cut(s)	817, 850
BalI	TGGCCA	1 cut(s)	1063
BbvI	GCAGC	4 cut(s)	119, 294, 729, 1087
BciT130I	CCWGG	2 cut(s)	432, 903
BciVI	GTATCC	1 cut(s)	601
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	905
BfaI	CTAG	2 cut(s)	35, 675
BfmI	CTRYAG	1 cut(s)	308
BfoI	RGCGCY	2 cut(s)	54, 438
BfuI	GTATCC	1 cut(s)	601
BisI	GCNGC	6 cut(s)	102, 105, 108, 308, 718, 1076
BlsI	GCNGC	6 cut(s)	103, 106, 109, 309, 719, 1077
Bme1390I	CCNGG	2 cut(s)	432, 903
BmeT110I	CYCGRG	1 cut(s)	117
BmiI	GGNNCC	3 cut(s)	64, 763, 795
BmrFI	CCNGG	2 cut(s)	432, 903
BmsI	GCATC	1 cut(s)	968
BpmI	CTGGAG	3 cut(s)	31, 49, 618
BpuEI	CTTGAG	2 cut(s)	77, 527
BsaAI	YACGTR	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	2 cut(s)	598, 809
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	3 cut(s)	408, 635, 1064
Bse21I	CCTNAGG	1 cut(s)	378
Bse3DI	GCAATG	2 cut(s)	207, 939
BseBI	CCWGG	2 cut(s)	432, 903
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	2 cut(s)	335, 983
BseLI	CCNNNNNNNGG	2 cut(s)	598, 809
BseMI	GCAATG	2 cut(s)	207, 939
BseMII	CTCAG	3 cut(s)	383, 392, 548
BseNI	ACTGG	3 cut(s)	408, 635, 1064
BsePI	GCGCGC	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	792
BseXI	GCAGC	4 cut(s)	119, 294, 729, 1087
Bsh1236I	CGCG	3 cut(s)	99, 713, 1031
BshFI	GGCC	4 cut(s)	44, 90, 479, 1063
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	111, 227
BslFI	GGGAC	1 cut(s)	1009
BslI	CCNNNNNNNGG	2 cut(s)	598, 809
BsmAI	GTCTC	1 cut(s)	905
BsmFI	GGGAC	1 cut(s)	1009
BsnI	GGCC	4 cut(s)	44, 90, 479, 1063
BsoBI	CYCGRG	1 cut(s)	117
Bsp1407I	TGTACA	1 cut(s)	1093
Bsp143I	GATC	4 cut(s)	174, 350, 366, 787
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	6 cut(s)	102, 105, 167, 806, 1073, 1082
BspANI	GGCC	4 cut(s)	44, 90, 479, 1063
BspCNI	CTCAG	3 cut(s)	384, 391, 547
BspFNI	CGCG	3 cut(s)	99, 713, 1031
BspLI	GGNNCC	3 cut(s)	64, 763, 795
BspMAI	CTGCAG	1 cut(s)	312
BspPI	GGATC	2 cut(s)	358, 361
BsrDI	GCAATG	2 cut(s)	207, 939
BsrFI	RCCGGY	1 cut(s)	226
BsrGI	TGTACA	1 cut(s)	1093
BsrI	ACTGG	3 cut(s)	408, 635, 1064
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	39
BssHII	GCGCGC	1 cut(s)	97
BssMI	GATC	4 cut(s)	174, 350, 366, 787
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	432, 903
Bst4CI	ACNGT	6 cut(s)	556, 582, 751, 756, 817, 1000
BstAUI	TGTACA	1 cut(s)	1093
BstBAI	YACGTR	1 cut(s)	339
BstC8I	GCNNGC	6 cut(s)	99, 124, 169, 228, 715, 983
BstDEI	CTNAG	3 cut(s)	378, 392, 534
BstDSI	CCRYGG	1 cut(s)	39
BstENI	CCTNNNNNAGG	2 cut(s)	596, 807
BstF5I	GGATG	2 cut(s)	335, 983
BstFNI	CGCG	3 cut(s)	99, 713, 1031
BstH2I	RGCGCY	2 cut(s)	54, 438
BstHHI	GCGC	9 cut(s)	53, 99, 101, 226, 286, 376, 437, 908, 1031
BstKTI	GATC	4 cut(s)	177, 353, 369, 790
BstMAI	GTCTC	1 cut(s)	905
BstMBI	GATC	4 cut(s)	174, 350, 366, 787
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 96, 107, 132, 281, 382, 1081
BstNI	CCWGG	2 cut(s)	432, 903
BstSCI	CCNGG	2 cut(s)	430, 901
BstSFI	CTRYAG	1 cut(s)	308
BstUI	CGCG	3 cut(s)	99, 713, 1031
BstV1I	GCAGC	4 cut(s)	119, 294, 729, 1087
BstXI	CCANNNNNNTGG	1 cut(s)	162
Bsu36I	CCTNAGG	1 cut(s)	378
BsuI	GTATCC	1 cut(s)	601
BsuRI	GGCC	4 cut(s)	44, 90, 479, 1063
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	335, 983
BtsIMutI	CAGTG	3 cut(s)	277, 360, 622
Cac8I	GCNNGC	6 cut(s)	99, 124, 169, 228, 715, 983
CfoI	GCGC	9 cut(s)	53, 99, 101, 226, 286, 376, 437, 908, 1031
Cfr10I	RCCGGY	1 cut(s)	226
CseI	GACGC	2 cut(s)	559, 719
Csp6I	GTAC	4 cut(s)	401, 752, 826, 1094
CviAII	CATG	7 cut(s)	40, 172, 181, 371, 456, 776, 822
CviQI	GTAC	4 cut(s)	401, 752, 826, 1094
DdeI	CTNAG	3 cut(s)	378, 392, 534
DpnI	GATC	4 cut(s)	176, 352, 368, 789
DpnII	GATC	4 cut(s)	174, 350, 366, 787
DraIII	CACNNNGTG	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	1061
Eco130I	CCWWGG	1 cut(s)	39
Eco147I	AGGCCT	1 cut(s)	90
Eco57I	CTGAAG	2 cut(s)	598, 837
Eco81I	CCTNAGG	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	117
EcoNI	CCTNNNNNAGG	2 cut(s)	596, 807
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	430, 901
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	7 cut(s)	43, 175, 184, 374, 459, 779, 825
FaqI	GGGAC	1 cut(s)	1009
FatI	CATG	7 cut(s)	39, 171, 180, 370, 455, 775, 821
FauI	CCCGC	1 cut(s)	160
FauNDI	CATATG	1 cut(s)	973
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	6 cut(s)	102, 105, 108, 308, 718, 1076
FokI	GGATG	2 cut(s)	342, 990
Fsp4HI	GCNGC	6 cut(s)	102, 105, 108, 308, 718, 1076
FspBI	CTAG	2 cut(s)	35, 675
GlaI	GCGC	9 cut(s)	52, 98, 100, 225, 285, 375, 436, 907, 1030
GluI	GCNGC	6 cut(s)	102, 105, 108, 308, 718, 1076
GsuI	CTGGAG	3 cut(s)	31, 49, 618
HaeII	RGCGCY	2 cut(s)	54, 438
HaeIII	GGCC	4 cut(s)	44, 90, 479, 1063
HapII	CCGG	2 cut(s)	111, 227
HgaI	GACGC	2 cut(s)	559, 719
HhaI	GCGC	9 cut(s)	53, 99, 101, 226, 286, 376, 437, 908, 1031
Hin1II	CATG	7 cut(s)	43, 175, 184, 374, 459, 779, 825
Hin6I	GCGC	9 cut(s)	51, 97, 99, 224, 284, 374, 435, 906, 1029
HinP1I	GCGC	9 cut(s)	51, 97, 99, 224, 284, 374, 435, 906, 1029
HindIII	AAGCTT	2 cut(s)	497, 849
HinfI	GANTC	5 cut(s)	415, 424, 741, 839, 884
HpaII	CCGG	2 cut(s)	111, 227
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	654
Hpy188I	TCNGA	9 cut(s)	13, 30, 393, 537, 552, 663, 730, 856, 889
Hpy188III	TCNNGA	7 cut(s)	76, 380, 506, 707, 759, 791, 896
Hpy8I	GTNNAC	1 cut(s)	654
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	3 cut(s)	64, 292, 622
HpyCH4III	ACNGT	6 cut(s)	556, 582, 751, 756, 817, 1000
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	8 cut(s)	254, 310, 342, 491, 560, 620, 969, 985
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 96, 107, 132, 281, 382, 1081
HpyF3I	CTNAG	3 cut(s)	378, 392, 534
HpySE526I	ACGT	1 cut(s)	338
Hsp92II	CATG	7 cut(s)	43, 175, 184, 374, 459, 779, 825
HspAI	GCGC	9 cut(s)	51, 97, 99, 224, 284, 374, 435, 906, 1029
KroI	GCCGGC	1 cut(s)	226
KroNI	GCCGGC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	174, 350, 366, 787
LmnI	GCTCC	3 cut(s)	68, 382, 637
Lsp1109I	GCAGC	4 cut(s)	119, 294, 729, 1087
LweI	GCATC	1 cut(s)	968
MaeI	CTAG	2 cut(s)	35, 675
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	4 cut(s)	238, 334, 574, 817
MalI	GATC	4 cut(s)	176, 352, 368, 789
MboI	GATC	4 cut(s)	174, 350, 366, 787
MboII	GAAGA	4 cut(s)	91, 94, 869, 875
MlsI	TGGCCA	1 cut(s)	1063
MluCI	AATT	6 cut(s)	16, 202, 486, 586, 732, 1065
MluNI	TGGCCA	1 cut(s)	1063
MlyI	GAGTC	2 cut(s)	409, 418
MmeI	TCCRAC	1 cut(s)	169
Mox20I	TGGCCA	1 cut(s)	1063
MroNI	GCCGGC	1 cut(s)	226
MscI	TGGCCA	1 cut(s)	1063
MseI	TTAA	1 cut(s)	1117
MslI	CAYNNNNRTG	2 cut(s)	160, 976
Msp20I	TGGCCA	1 cut(s)	1063
MspI	CCGG	2 cut(s)	111, 227
MspR9I	CCNGG	2 cut(s)	432, 903
MvaI	CCWGG	2 cut(s)	432, 903
MvnI	CGCG	3 cut(s)	99, 713, 1031
MwoI	GCNNNNNNNGC	7 cut(s)	50, 96, 107, 132, 281, 382, 1081
NaeI	GCCGGC	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	973
NdeII	GATC	4 cut(s)	174, 350, 366, 787
NgoMIV	GCCGGC	1 cut(s)	226
NlaIII	CATG	7 cut(s)	43, 175, 184, 374, 459, 779, 825
NlaIV	GGNNCC	3 cut(s)	64, 763, 795
PaeR7I	CTCGAG	1 cut(s)	117
PauI	GCGCGC	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	228
PfeI	GAWTC	3 cut(s)	741, 839, 884
PkrI	GCNGC	6 cut(s)	103, 106, 109, 309, 719, 1077
PleI	GAGTC	2 cut(s)	409, 418
PpsI	GAGTC	2 cut(s)	409, 418
Ppu21I	YACGTR	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	430, 901
PspGI	CCWGG	2 cut(s)	430, 901
PspN4I	GGNNCC	3 cut(s)	64, 763, 795
PspXI	VCTCGAGB	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	312
PteI	GCGCGC	1 cut(s)	97
RsaI	GTAC	4 cut(s)	402, 753, 827, 1095
RsaNI	GTAC	4 cut(s)	401, 752, 826, 1094
RseI	CAYNNNNRTG	2 cut(s)	160, 976
SaqAI	TTAA	1 cut(s)	1117
SatI	GCNGC	6 cut(s)	102, 105, 108, 308, 718, 1076
Sau3AI	GATC	4 cut(s)	174, 350, 366, 787
SchI	GAGTC	2 cut(s)	409, 418
ScrFI	CCNGG	2 cut(s)	432, 903
SfaNI	GCATC	1 cut(s)	968
SfcI	CTRYAG	1 cut(s)	308
Sfr274I	CTCGAG	1 cut(s)	117
SlaI	CTCGAG	1 cut(s)	117
SmiMI	CAYNNNNRTG	2 cut(s)	160, 976
SmlI	CTYRAG	3 cut(s)	92, 117, 506
SmoI	CTYRAG	3 cut(s)	92, 117, 506
Sse9I	AATT	6 cut(s)	16, 202, 486, 586, 732, 1065
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	6 cut(s)	102, 105, 167, 806, 1073, 1082
SspMI	CTAG	2 cut(s)	35, 675
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	430, 901
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	6 cut(s)	556, 582, 751, 756, 817, 1000
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	2 cut(s)	20, 118
TasI	AATT	6 cut(s)	16, 202, 486, 586, 732, 1065
TatI	WGTACW	3 cut(s)	400, 751, 1093
TauI	GCSGC	2 cut(s)	104, 107
TfiI	GAWTC	3 cut(s)	741, 839, 884
Tru1I	TTAA	1 cut(s)	1117
Tru9I	TTAA	1 cut(s)	1117
TscAI	CASTG	3 cut(s)	277, 360, 622
TseI	GCWGC	4 cut(s)	107, 307, 717, 1075
TspDTI	ATGAA	6 cut(s)	46, 61, 196, 733, 860, 876
TspRI	CASTG	3 cut(s)	277, 360, 622
XagI	CCTNNNNNAGG	2 cut(s)	596, 807
XapI	RAATTY	3 cut(s)	16, 202, 732
XhoI	CTCGAG	1 cut(s)	117
XspI	CTAG	2 cut(s)	35, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.