Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000984

Physical Location & Seq

Genomic Coordinates Reverse (-)

3192176 .. 3197022

Gene Structure 4847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG021600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGGGTGTCAGAGAATTCGATAGGTCTGATACTAGCCATGGCCTCCAGCGCCTTCATAGGCTCCAGCTTCATCTTAAAGAAGAAAGGCCTCAAGCGCGCCGCCGCCGCCGGAACTCGAGCAGGAGTTGGGGGATATACTTATTTGTTAGAGCCATTATGGTGGGCGGGCATGATCACCATGATTGTTGGAGAGGTTGCGAATTTCATTGCTTATGTATATGCGCCGGCAGTTCTTGTAACTCCACTTGGTGCATTGAGTATAATAGTCAGTGCTGTCTTGGCGCACTTCTTGTTGAAGGAAAGGCTGCAGAAAATGGGGATTGTGGGATGTGTTACGTGCATTGTGGGATCAGTGGTTATTGTGATCCATGCGCCGCAGGAGCATACTCTGAGTTCTGTACTGGAAATATGGACTCTTGCGACTCAACCAGCCTTTCTAATTTACGTCGCAGCTACACTTTCCCTGGTCTTAGCTTTGGTTTTGCATTTTGAACCTCGCTATGGGCTAACAAACATACTAGTCTACTTGGGAATCTGTTCTTTGATGGGTTCACTTACGGTTGTAAGCATAAAGGCCATTGGAATTGCAATAAAGCTTACTCTTGAGGGAGTAAGTCAAATAGCTTATCCTCAGACTTGGTTTTTTCTGACTGTTGCAGTAATCTGCGTCGTTACACAGTTGAATTACCTCAACAAGGCTTTGGATACCTTCAGTGCAACTATTGTTGCTCCAGTATATTATGTGATGTTCACAACTCTGACCATTATTGCTAGTGTAATAATGTTCAAGGATTGGTCTGGTCAGGATGTGAGCAGCATAGCCTCTGAAATTTGTGGATTCATTACTGTACTGTCAGGAACCATTATACTCCATGCTACCAGAGATCAGGAACCACCTCCTCCGCAAGGAACTGTAACATGGTACATTAGTGGAGATTCAATGAAGGCTTCAGAAGATGAAGATTTGATTGCTTTACACAATTCAGATTTTCTTGAACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005783 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051607 GO:0051704 GO:0051707 GO:0070838 GO:0071944 GO:0072511 GO:0097708 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

334

Amino Acids

35.82

Weight (kDa)

5.65

Isoelectric Point (pI)

25.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	6 - 296	3.4e-136	Magnesium transporter NIPA
EamA	PF00892	8 - 122	9.7e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21120 AT4G38730
fragaria_vesca	FvH4_1g25650 FvH4_1g25650 FvH4_1g25650 FvH4_2g01760 FvH4_2g01760 FvH4_2g01760
malus_domestica	MD00G1128200.v1.1 MD03G1168400.v1.1 MD05G1116700.v1.1 MD10G1119800.v1.1 MD15G1139500.v1.1
prunus_persica	Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G259000_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.4G282600_v2.0.a1 Prupe.8G161200_v2.0.a1 Prupe.8G161200_v2.0.a1
pyrus_communis	pycom03g12470 pycom05g11100 pycom10g10320 pycom15g12590 pycom520g00770
rosa_chinensis	RchiOBHm_Chr2g0124131 RchiOBHm_Chr5g0050741 RchiOBHm_Chr6g0244791
rosa_laevigata	RLG00000015328 RLG00000018785 RLG00000034727
rosa_multiflora	Rmu_sc0002064.1_g000008 Rmu_sc0002117.1_g000013 Rmu_sc0008812.1_g000003 Rmu_sc0036275.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120110 Rroxscaffold_7G00215490
rosa_rugosa	Rorug05G0263300 Rorug05G0263400 Rorug05G0263500 Rorug05G0510800.1 Rorug05G0510900
rosa_samantha	Rh2AG307700 Rh2BG316700 Rh5BG344900 Rh5CG372800 Rh5DG358000 Rh6BG021600
rosa_wichuraiana	Rw2G024800 Rw5G031660 Rw6G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	525
AccII	CGCG	1 cut(s)	99
AciI	CCGC	6 cut(s)	102, 105, 108, 167, 377, 905
AclWI	GGATC	2 cut(s)	358, 361
AcsI	RAATTY	3 cut(s)	16, 202, 831
AcuI	CTGAAG	2 cut(s)	697, 936
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	3 cut(s)	402, 852, 926
AfiI	CCNNNNNNNGG	3 cut(s)	503, 697, 908
AgsI	TTSAA	6 cut(s)	298, 494, 685, 790, 942, 998
AhlI	ACTAGT	1 cut(s)	520
AjnI	CCWGG	1 cut(s)	465
AluBI	AGCT	5 cut(s)	69, 455, 476, 598, 626
AluI	AGCT	5 cut(s)	69, 455, 476, 598, 626
AlwI	GGATC	2 cut(s)	358, 361
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	3 cut(s)	42, 88, 576
ApeKI	GCWGC	3 cut(s)	307, 452, 816
ApoI	RAATTY	3 cut(s)	16, 202, 831
Asp700I	GAANNNNTTC	1 cut(s)	538
AspLEI	GCGC	6 cut(s)	53, 99, 101, 226, 286, 376
AsuHPI	GGTGA	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	117
BaeI	ACNNNNGTAYC	2 cut(s)	916, 949
BbvI	GCAGC	3 cut(s)	294, 464, 828
BccI	CCATC	1 cut(s)	541
BciT130I	CCWGG	1 cut(s)	467
BciVI	GTATCC	1 cut(s)	700
BclI	TGATCA	1 cut(s)	174
BcuI	ACTAGT	1 cut(s)	520
BfaI	CTAG	3 cut(s)	35, 521, 774
BfmI	CTRYAG	1 cut(s)	308
BfoI	RGCGCY	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	700
BisI	GCNGC	7 cut(s)	102, 105, 108, 308, 377, 453, 817
BlsI	GCNGC	7 cut(s)	103, 106, 109, 309, 378, 454, 818
Bme1390I	CCNGG	1 cut(s)	467
BmeT110I	CYCGRG	1 cut(s)	117
BmiI	GGNNCC	3 cut(s)	64, 862, 894
BmrFI	CCNGG	1 cut(s)	467
BpmI	CTGGAG	3 cut(s)	31, 49, 717
BpuEI	CTTGAG	2 cut(s)	77, 626
BsaAI	YACGTR	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	39, 465
Bsc4I	CCNNNNNNNGG	3 cut(s)	503, 697, 908
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	2 cut(s)	408, 734
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	2 cut(s)	39, 465
BseGI	GGATG	2 cut(s)	335, 814
BseLI	CCNNNNNNNGG	3 cut(s)	503, 697, 908
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	383, 647
BseNI	ACTGG	2 cut(s)	408, 734
BsePI	GCGCGC	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	891
BseXI	GCAGC	3 cut(s)	294, 464, 828
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	44, 90, 578
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	111, 227
BslI	CCNNNNNNNGG	3 cut(s)	503, 697, 908
BsnI	GGCC	3 cut(s)	44, 90, 578
BsoBI	CYCGRG	1 cut(s)	117
Bsp143I	GATC	4 cut(s)	174, 350, 366, 886
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	6 cut(s)	102, 105, 108, 167, 377, 905
BspANI	GGCC	3 cut(s)	44, 90, 578
BspCNI	CTCAG	2 cut(s)	384, 646
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	64, 862, 894
BspMAI	CTGCAG	1 cut(s)	312
BspPI	GGATC	2 cut(s)	358, 361
BsrDI	GCAATG	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	408, 734
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	2 cut(s)	39, 465
BssHII	GCGCGC	1 cut(s)	97
BssMI	GATC	4 cut(s)	174, 350, 366, 886
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	7 cut(s)	562, 655, 681, 850, 855, 916, 1002
BstBAI	YACGTR	1 cut(s)	339
BstC8I	GCNNGC	3 cut(s)	99, 169, 228
BstDEI	CTNAG	3 cut(s)	392, 472, 633
BstDSI	CCRYGG	1 cut(s)	39
BstENI	CCTNNNNNAGG	2 cut(s)	695, 906
BstF5I	GGATG	2 cut(s)	335, 814
BstFNI	CGCG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	6 cut(s)	53, 99, 101, 226, 286, 376
BstKTI	GATC	4 cut(s)	177, 353, 369, 889
BstMBI	GATC	4 cut(s)	174, 350, 366, 886
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 96, 107, 281, 382
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	465
BstSFI	CTRYAG	1 cut(s)	308
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	3 cut(s)	294, 464, 828
BstXI	CCANNNNNNTGG	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	700
BsuRI	GGCC	3 cut(s)	44, 90, 578
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	335, 814
BtsIMutI	CAGTG	3 cut(s)	277, 360, 721
Cac8I	GCNNGC	3 cut(s)	99, 169, 228
CfoI	GCGC	6 cut(s)	53, 99, 101, 226, 286, 376
Cfr10I	RCCGGY	1 cut(s)	226
CseI	GACGC	1 cut(s)	658
Csp6I	GTAC	3 cut(s)	401, 851, 925
CviAII	CATG	6 cut(s)	40, 172, 181, 371, 875, 921
CviQI	GTAC	3 cut(s)	401, 851, 925
DdeI	CTNAG	3 cut(s)	392, 472, 633
DpnI	GATC	4 cut(s)	176, 352, 368, 888
DpnII	GATC	4 cut(s)	174, 350, 366, 886
DraIII	CACNNNGTG	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	39
Eco147I	AGGCCT	1 cut(s)	90
Eco57I	CTGAAG	2 cut(s)	697, 936
Eco88I	CYCGRG	1 cut(s)	117
EcoNI	CCTNNNNNAGG	2 cut(s)	695, 906
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	6 cut(s)	43, 175, 184, 374, 878, 924
FatI	CATG	6 cut(s)	39, 171, 180, 370, 874, 920
FauI	CCCGC	1 cut(s)	160
FbaI	TGATCA	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	7 cut(s)	102, 105, 108, 308, 377, 453, 817
FokI	GGATG	2 cut(s)	342, 821
Fsp4HI	GCNGC	7 cut(s)	102, 105, 108, 308, 377, 453, 817
FspBI	CTAG	3 cut(s)	35, 521, 774
GlaI	GCGC	6 cut(s)	52, 98, 100, 225, 285, 375
GluI	GCNGC	7 cut(s)	102, 105, 108, 308, 377, 453, 817
GsuI	CTGGAG	3 cut(s)	31, 49, 717
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	3 cut(s)	44, 90, 578
HapII	CCGG	2 cut(s)	111, 227
HgaI	GACGC	1 cut(s)	658
HhaI	GCGC	6 cut(s)	53, 99, 101, 226, 286, 376
Hin1II	CATG	6 cut(s)	43, 175, 184, 374, 878, 924
Hin6I	GCGC	6 cut(s)	51, 97, 99, 224, 284, 374
HinP1I	GCGC	6 cut(s)	51, 97, 99, 224, 284, 374
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	5 cut(s)	415, 424, 534, 840, 938
HpaII	CCGG	2 cut(s)	111, 227
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	3 cut(s)	526, 554, 753
Hpy188I	TCNGA	9 cut(s)	13, 30, 393, 636, 651, 762, 829, 955, 988
Hpy188III	TCNNGA	5 cut(s)	605, 806, 858, 890, 995
Hpy8I	GTNNAC	3 cut(s)	526, 554, 753
Hpy99I	CGWCG	2 cut(s)	452, 674
HpyAV	CCTTC	4 cut(s)	64, 292, 721, 940
HpyCH4III	ACNGT	7 cut(s)	562, 655, 681, 850, 855, 916, 1002
HpyCH4IV	ACGT	2 cut(s)	338, 447
HpyCH4V	TGCA	7 cut(s)	254, 310, 342, 487, 590, 659, 719
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 96, 107, 281, 382
HpyF3I	CTNAG	3 cut(s)	392, 472, 633
HpySE526I	ACGT	2 cut(s)	338, 447
Hsp92II	CATG	6 cut(s)	43, 175, 184, 374, 878, 924
HspAI	GCGC	6 cut(s)	51, 97, 99, 224, 284, 374
KroI	GCCGGC	1 cut(s)	226
KroNI	GCCGGC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	174, 350, 366, 886
LmnI	GCTCC	3 cut(s)	68, 382, 736
Lsp1109I	GCAGC	3 cut(s)	294, 464, 828
MaeI	CTAG	3 cut(s)	35, 521, 774
MaeII	ACGT	2 cut(s)	338, 447
MaeIII	GTNAC	4 cut(s)	238, 334, 673, 916
MalI	GATC	4 cut(s)	176, 352, 368, 888
MboI	GATC	4 cut(s)	174, 350, 366, 886
MboII	GAAGA	3 cut(s)	94, 968, 974
MluCI	AATT	7 cut(s)	16, 202, 441, 585, 685, 831, 982
MlyI	GAGTC	2 cut(s)	409, 418
MmeI	TCCRAC	1 cut(s)	169
MroNI	GCCGGC	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	538
MseI	TTAA	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	160
MspI	CCGG	2 cut(s)	111, 227
MspR9I	CCNGG	1 cut(s)	467
MvaI	CCWGG	1 cut(s)	467
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	5 cut(s)	50, 96, 107, 281, 382
NaeI	GCCGGC	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	4 cut(s)	174, 350, 366, 886
NgoMIV	GCCGGC	1 cut(s)	226
NlaIII	CATG	6 cut(s)	43, 175, 184, 374, 878, 924
NlaIV	GGNNCC	3 cut(s)	64, 862, 894
PaeR7I	CTCGAG	1 cut(s)	117
PauI	GCGCGC	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	538
PfeI	GAWTC	3 cut(s)	534, 840, 938
PkrI	GCNGC	7 cut(s)	103, 106, 109, 309, 378, 454, 818
PleI	GAGTC	2 cut(s)	409, 418
PpsI	GAGTC	2 cut(s)	409, 418
Ppu21I	YACGTR	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	3 cut(s)	64, 862, 894
PspXI	VCTCGAGB	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	312
PteI	GCGCGC	1 cut(s)	97
RsaI	GTAC	3 cut(s)	402, 852, 926
RsaNI	GTAC	3 cut(s)	401, 851, 925
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	7 cut(s)	102, 105, 108, 308, 377, 453, 817
Sau3AI	GATC	4 cut(s)	174, 350, 366, 886
SchI	GAGTC	2 cut(s)	409, 418
ScrFI	CCNGG	1 cut(s)	467
SfcI	CTRYAG	1 cut(s)	308
Sfr274I	CTCGAG	1 cut(s)	117
SlaI	CTCGAG	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	160
SmlI	CTYRAG	3 cut(s)	92, 117, 605
SmoI	CTYRAG	3 cut(s)	92, 117, 605
SpeI	ACTAGT	1 cut(s)	520
Sse9I	AATT	7 cut(s)	16, 202, 441, 585, 685, 831, 982
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	6 cut(s)	102, 105, 108, 167, 377, 905
SspMI	CTAG	3 cut(s)	35, 521, 774
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	7 cut(s)	562, 655, 681, 850, 855, 916, 1002
TaiI	ACGT	2 cut(s)	341, 450
TaqI	TCGA	2 cut(s)	20, 118
TasI	AATT	7 cut(s)	16, 202, 441, 585, 685, 831, 982
TatI	WGTACW	2 cut(s)	400, 850
TauI	GCSGC	4 cut(s)	104, 107, 110, 379
TfiI	GAWTC	3 cut(s)	534, 840, 938
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	3 cut(s)	277, 360, 721
TseI	GCWGC	3 cut(s)	307, 452, 816
TspDTI	ATGAA	6 cut(s)	46, 61, 196, 832, 959, 975
TspRI	CASTG	3 cut(s)	277, 360, 721
XagI	CCTNNNNNAGG	2 cut(s)	695, 906
XapI	RAATTY	3 cut(s)	16, 202, 831
XhoI	CTCGAG	1 cut(s)	117
XmiI	GTMKAC	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	538
XspI	CTAG	3 cut(s)	35, 521, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.