Rorug05G0510900

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
69464728 .. 69466786
2059 bp
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UTR
Exon/CDS
Intron
Rorug05G0510900.1

Sequence Viewer

Length: 387 bp
ATGATATTAGCTCTAACGGCAACATGGGCAGCAGCAGCAGCACCTCATCACAAATTTCCAGCCATGTCATCAGCACCTGCCATGGCTCCTAATAATCAAGATGAGATTCTGTTCTTGGATGATAAGCACTATGCTTTGCATGGAGAGATCATGTTGGTGGTGCTTATTGTTCTCTTCATCGCTTTCGTCTCCTGCCTTGCCGTGGTCACTCGTATCCGGCGAGCTAGGGCAGTCGAGGAGGACTTGGTTTCGAAGAACCTGTGCAACTGTTTTGGACTATGCAGTTTGGTGAGGAAGAAGAGGAACAGAGGAGATGAGGATGCTGCACCAGAAGCTCCACTGAGGGCCAGTAATGAGATACCAGAAAGTCTACCTCATGAGAAGTAG

Protein Analysis

128

Amino Acids

14.07

Weight (kDa)

6.5

Isoelectric Point (pI)

61.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 85
Acc36I ACCTGC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 370
AcsI RAATTY 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 202
AluBI AGCT 3 cut(s) 11, 224, 335
AluI AGCT 3 cut(s) 11, 224, 335
Alw26I GTCTC 1 cut(s) 193
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 5 cut(s) 29, 32, 35, 38, 323
ApoI RAATTY 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 345
AsuHPI GGTGA 1 cut(s) 301
AsuII TTCGAA 1 cut(s) 251
BbvI GCAGC 5 cut(s) 41, 44, 47, 50, 310
BceAI ACGGC 2 cut(s) 33, 185
BciVI GTATCC 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 85
BfuI GTATCC 1 cut(s) 224
BisI GCNGC 5 cut(s) 30, 33, 36, 39, 324
BlsI GCNGC 5 cut(s) 31, 34, 37, 40, 325
BmgT120I GGNCC 1 cut(s) 345
BmiI GGNNCC 1 cut(s) 87
BmsI GCATC 1 cut(s) 310
Bpu14I TTCGAA 1 cut(s) 251
BsaJI CCNNGG 2 cut(s) 81, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse1I ACTGG 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 81, 201
BseGI GGATG 2 cut(s) 124, 325
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMII CTCAG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 348
BseRI GAGGAG 2 cut(s) 251, 324
BseXI GCAGC 5 cut(s) 41, 44, 47, 50, 310
BsgI GTGCAG 1 cut(s) 309
BshFI GGCC 1 cut(s) 347
BsiSI CCGG 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 193
BsmBI CGTCTC 1 cut(s) 193
BsnI GGCC 1 cut(s) 347
Bsp119I TTCGAA 1 cut(s) 251
Bsp143I GATC 1 cut(s) 147
Bsp19I CCATGG 1 cut(s) 81
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 1 cut(s) 333
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 251
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 2 cut(s) 81, 201
BssMI GATC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 2 cut(s) 179, 293
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 341
BstDSI CCRYGG 2 cut(s) 81, 201
BstF5I GGATG 2 cut(s) 124, 325
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 5 cut(s) 17, 26, 35, 38, 332
BstV1I GCAGC 5 cut(s) 41, 44, 47, 50, 310
BsuI GTATCC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 347
BtgI CCRYGG 2 cut(s) 81, 201
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 2 cut(s) 124, 325
BtsIMutI CAGTG 1 cut(s) 338
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 222
CaiI CAGNNNCTG 1 cut(s) 77
CciI TCATGA 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 345
CviAII CATG 6 cut(s) 24, 64, 82, 140, 151, 377
CviJI RGCY 6 cut(s) 11, 62, 86, 224, 335, 347
CviKI_1 RGCY 6 cut(s) 11, 62, 86, 224, 335, 347
DdeI CTNAG 1 cut(s) 341
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eam1104I CTCTTC 2 cut(s) 179, 293
EarI CTCTTC 2 cut(s) 179, 293
Eco130I CCWWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 6 cut(s) 27, 67, 85, 143, 154, 380
FaiI YATR 8 cut(s) 25, 65, 83, 132, 141, 152, 280, 378
FatI CATG 6 cut(s) 23, 63, 81, 139, 150, 376
FblI GTMKAC 1 cut(s) 370
Fnu4HI GCNGC 5 cut(s) 30, 33, 36, 39, 324
FokI GGATG 2 cut(s) 131, 332
Fsp4HI GCNGC 5 cut(s) 30, 33, 36, 39, 324
FspBI CTAG 1 cut(s) 225
GluI GCNGC 5 cut(s) 30, 33, 36, 39, 324
HaeIII GGCC 1 cut(s) 347
HapII CCGG 1 cut(s) 217
Hin1II CATG 6 cut(s) 27, 67, 85, 143, 154, 380
HinfI GANTC 1 cut(s) 106
HpaII CCGG 1 cut(s) 217
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 371
Hpy188III TCNNGA 2 cut(s) 98, 377
Hpy8I GTNNAC 1 cut(s) 371
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 4 cut(s) 139, 264, 282, 326
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 26, 35, 38, 332
HpyF3I CTNAG 1 cut(s) 341
Hsp92II CATG 6 cut(s) 27, 67, 85, 143, 154, 380
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 2 cut(s) 91, 340
LpnPI CCDG 8 cut(s) 72, 90, 205, 230, 272, 342, 361, 375
Lsp1109I GCAGC 5 cut(s) 41, 44, 47, 50, 310
LweI GCATC 1 cut(s) 310
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 4 cut(s) 166, 265, 307, 310
MluCI AATT 1 cut(s) 53
MnlI CCTC 9 cut(s) 54, 229, 232, 285, 294, 302, 310, 336, 384
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 1 cut(s) 217
MwoI GCNNNNNNNGC 5 cut(s) 17, 26, 35, 38, 332
NcoI CCATGG 1 cut(s) 81
NdeII GATC 1 cut(s) 147
NlaIII CATG 6 cut(s) 27, 67, 85, 143, 154, 380
NlaIV GGNNCC 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 205
NspV TTCGAA 1 cut(s) 251
PagI TCATGA 1 cut(s) 376
PaqCI CACCTGC 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 5 cut(s) 31, 34, 37, 40, 325
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 345
PstNI CAGNNNCTG 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 155
SatI GCNGC 5 cut(s) 30, 33, 36, 39, 324
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 345
SetI ASST 7 cut(s) 13, 46, 79, 226, 261, 337, 376
SfaNI GCATC 1 cut(s) 310
SfuI TTCGAA 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 1 cut(s) 53
SspMI CTAG 1 cut(s) 225
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 2 cut(s) 234, 251
TasI AATT 1 cut(s) 53
TfiI GAWTC 1 cut(s) 106
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 5 cut(s) 29, 32, 35, 38, 323
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 166
TspRI CASTG 1 cut(s) 345
XapI RAATTY 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 370
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.