Rmu_sc0008812.1_g000003

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008812.1
OG0000984
Physical Location & Seq
Reverse (-)
12857 .. 18291
5435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008812.1_g000003.1.cds

Sequence Viewer

Length: 1125 bp
atgtcatcgagcaatttgaaagggttcatattggccgtggtctcaagcgccttcattggctccagcttcatcatcaagaagaagggtctccgcagagccggcaacaatggaactcgtgccagttctggaggatatgggtatctgcgggagcctctatggtggattggaatggtcacaatggttgttggagagatagcaaattttgtagcatacatatacgcacccgccgggcttgtcacgccgcttggtgctttgagtatcattgttagtgcggtgttagcgcatttcctgttaaaggagaaactccagaaaatgggaatgttgggctgccttttatgcatagtgggttcggttgtgattgtactccatgcacccgaagagcagactcttacttccgtccaacaaatctgggatttagcaatacaaccagctttccttttgtatacagcctcagtgatagctgtaacgctagtccttatcttgtattgttccccccgctatggccaaaccaatatactgatttatataggaatatgctcaattatcggatcattaactgtcatgagcataaaagccattggcattgcaataaaactcacaatagagggcacaaaccaggcagtatacttccaaacatggatttttgcaatggttgcagttacatgcatcatcactcaattaaattacctaaatatggcattggatactttcaacacagcagtcgtttctcccatctattatgctatgttcacatctttcacaatacttgcgagtgcaataatgtttaaggtattgctacgcaacacagcagtcgtttctcccatctattatgctatgttcacatctttcacaatacttgcgagtgcaataatgtttaaggattattctggtcaaagtgcaagcagcatagcttcagaattttgtggattcatcactgtgttatctgggactgctatattgcatagtacaagagaaccagatccacctttacttacagatttgtatacgccattatctcctaaagtatcatggtacatccaaagcaatggagaatggaagcagaaggatgaagacggttcagcccccaatttcatcacagtgcttcggccagactatttcaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mg_trans_NIPA

Protein Analysis

374

Amino Acids

40.77

Weight (kDa)

8.76

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 313
AccI GTMKAC 3 cut(s) 443, 624, 1004
AciI CCGC 6 cut(s) 91, 145, 225, 242, 272, 496
AclWI GGATC 2 cut(s) 556, 974
AcoI YGGCCR 3 cut(s) 33, 502, 1106
AcsI RAATTY 2 cut(s) 199, 917
AcuI CTGAAG 1 cut(s) 897
AfaI GTAC 3 cut(s) 363, 967, 1034
AfiI CCNNNNNNNGG 4 cut(s) 295, 313, 500, 694
AgsI TTSAA 3 cut(s) 19, 712, 1120
AjnI CCWGG 1 cut(s) 615
AluBI AGCT 4 cut(s) 66, 431, 461, 911
AluI AGCT 4 cut(s) 66, 431, 461, 911
Alw26I GTCTC 2 cut(s) 46, 92
AlwI GGATC 2 cut(s) 556, 974
AoxI GGCC 3 cut(s) 33, 502, 1106
ApeKI GCWGC 2 cut(s) 327, 903
ApoI RAATTY 2 cut(s) 199, 917
Asp700I GAANNNNTTC 1 cut(s) 23
AspLEI GCGC 2 cut(s) 50, 283
AsuC2I CCSGG 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 611
BalI TGGCCA 1 cut(s) 504
BauI CACGAG 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 1077
BbvI GCAGC 2 cut(s) 314, 915
BccI CCATC 2 cut(s) 740, 830
BceAI ACGGC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 617
BciVI GTATCC 1 cut(s) 697
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 46, 92
BfaI CTAG 1 cut(s) 470
BfoI RGCGCY 1 cut(s) 51
BfuI GTATCC 1 cut(s) 697
BisI GCNGC 3 cut(s) 242, 328, 904
BlsI GCNGC 3 cut(s) 243, 329, 905
Bme1390I CCNGG 2 cut(s) 229, 617
BmiI GGNNCC 2 cut(s) 61, 150
BmrFI CCNGG 2 cut(s) 229, 617
BmsI GCATC 1 cut(s) 675
BpiI GAAGAC 1 cut(s) 1077
BpmI CTGGAG 3 cut(s) 46, 147, 290
BpuEI CTTGAG 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 229
BsaI GGTCTC 2 cut(s) 46, 92
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 4 cut(s) 295, 313, 500, 694
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 120
Bse3DI GCAATG 3 cut(s) 582, 654, 1051
BseBI CCWGG 1 cut(s) 617
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 2 cut(s) 1035, 1072
BseLI CCNNNNNNNGG 4 cut(s) 295, 313, 500, 694
BseMI GCAATG 3 cut(s) 582, 654, 1051
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 1 cut(s) 120
BseSI GKGCMC 1 cut(s) 611
BseXI GCAGC 2 cut(s) 314, 915
BshFI GGCC 3 cut(s) 35, 504, 1108
BsiSI CCGG 2 cut(s) 99, 228
BslFI GGGAC 1 cut(s) 961
BslI CCNNNNNNNGG 4 cut(s) 295, 313, 500, 694
BsmAI GTCTC 2 cut(s) 46, 92
BsmFI GGGAC 1 cut(s) 961
BsnI GGCC 3 cut(s) 35, 504, 1108
Bso31I GGTCTC 2 cut(s) 46, 92
Bsp1286I GDGCHC 1 cut(s) 611
Bsp143I GATC 2 cut(s) 548, 979
BspACI CCGC 6 cut(s) 91, 145, 225, 242, 272, 496
BspANI GGCC 3 cut(s) 35, 504, 1108
BspCNI CTCAG 1 cut(s) 464
BspHI TCATGA 1 cut(s) 561
BspLI GGNNCC 2 cut(s) 61, 150
BspPI GGATC 2 cut(s) 556, 974
BspQI GCTCTTC 1 cut(s) 372
BspTNI GGTCTC 2 cut(s) 46, 92
BsrDI GCAATG 3 cut(s) 582, 654, 1051
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 2 cut(s) 548, 979
BssNAI GTATAC 3 cut(s) 444, 625, 1005
BssSI CACGAG 1 cut(s) 114
Bst1107I GTATAC 3 cut(s) 444, 625, 1005
Bst2BI CACGAG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 617
Bst4CI ACNGT 4 cut(s) 559, 937, 1076, 1099
Bst6I CTCTTC 1 cut(s) 372
BstAPI GCANNNNNTGC 1 cut(s) 653
BstC8I GCNNGC 2 cut(s) 100, 901
BstDEI CTNAG 1 cut(s) 451
BstDSI CCRYGG 1 cut(s) 36
BstENI CCTNNNNNAGG 1 cut(s) 293
BstF5I GGATG 2 cut(s) 1035, 1072
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 2 cut(s) 50, 283
BstKTI GATC 2 cut(s) 551, 982
BstMAI GTCTC 2 cut(s) 46, 92
BstMBI GATC 2 cut(s) 548, 979
BstMWI GCNNNNNNNGC 5 cut(s) 99, 238, 278, 336, 653
BstNI CCWGG 1 cut(s) 617
BstNSI RCATGY 1 cut(s) 666
BstSCI CCNGG 2 cut(s) 227, 615
BstSLI GKGCMC 1 cut(s) 611
BstV1I GCAGC 2 cut(s) 314, 915
BstV2I GAAGAC 1 cut(s) 1077
BstX2I RGATCY 1 cut(s) 979
BstXI CCANNNNNNTGG 1 cut(s) 1046
BstYI RGATCY 1 cut(s) 979
BstZ17I GTATAC 3 cut(s) 444, 625, 1005
BsuI GTATCC 1 cut(s) 697
BsuRI GGCC 3 cut(s) 35, 504, 1108
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 2 cut(s) 1035, 1072
BtsIMutI CAGTG 3 cut(s) 459, 933, 1104
Cac8I GCNNGC 2 cut(s) 100, 901
CciI TCATGA 1 cut(s) 561
CfoI GCGC 2 cut(s) 50, 283
Cfr10I RCCGGY 1 cut(s) 98
Csp6I GTAC 3 cut(s) 362, 966, 1033
CviAII CATG 5 cut(s) 368, 562, 636, 663, 1029
CviQI GTAC 3 cut(s) 362, 966, 1033
DdeI CTNAG 1 cut(s) 451
DpnI GATC 2 cut(s) 550, 981
DpnII GATC 2 cut(s) 548, 979
EaeI YGGCCR 3 cut(s) 33, 502, 1106
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco31I GGTCTC 2 cut(s) 46, 92
Eco57I CTGAAG 1 cut(s) 897
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 615
EcoT22I ATGCAT 2 cut(s) 341, 668
FaeI CATG 5 cut(s) 371, 565, 639, 666, 1032
FaqI GGGAC 1 cut(s) 961
FatI CATG 5 cut(s) 367, 561, 635, 662, 1028
FauI CCCGC 3 cut(s) 138, 232, 503
FblI GTMKAC 3 cut(s) 443, 624, 1004
Fnu4HI GCNGC 3 cut(s) 242, 328, 904
FokI GGATG 2 cut(s) 1022, 1079
Fsp4HI GCNGC 3 cut(s) 242, 328, 904
FspBI CTAG 1 cut(s) 470
GlaI GCGC 2 cut(s) 49, 282
GluI GCNGC 3 cut(s) 242, 328, 904
GsuI CTGGAG 3 cut(s) 46, 147, 290
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 3 cut(s) 35, 504, 1108
HapII CCGG 2 cut(s) 99, 228
HhaI GCGC 2 cut(s) 50, 283
Hin1II CATG 5 cut(s) 371, 565, 639, 666, 1032
Hin6I GCGC 2 cut(s) 48, 281
HinP1I GCGC 2 cut(s) 48, 281
HinfI GANTC 2 cut(s) 385, 927
HpaII CCGG 2 cut(s) 99, 228
Hpy166II GTNNAC 5 cut(s) 444, 625, 750, 840, 1005
Hpy188I TCNGA 2 cut(s) 548, 916
Hpy188III TCNNGA 4 cut(s) 76, 126, 307, 562
Hpy8I GTNNAC 5 cut(s) 444, 625, 750, 840, 1005
HpyAV CCTTC 3 cut(s) 61, 76, 1057
HpyCH4III ACNGT 4 cut(s) 559, 937, 1076, 1099
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 238, 278, 336, 653
HpyF3I CTNAG 1 cut(s) 451
Hsp92II CATG 5 cut(s) 371, 565, 639, 666, 1032
HspAI GCGC 2 cut(s) 48, 281
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
Kzo9I GATC 2 cut(s) 548, 979
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 2 cut(s) 65, 148
Lsp1109I GCAGC 2 cut(s) 314, 915
LweI GCATC 1 cut(s) 675
MaeI CTAG 1 cut(s) 470
MaeIII GTNAC 4 cut(s) 172, 235, 463, 658
MalI GATC 2 cut(s) 550, 981
MboI GATC 2 cut(s) 548, 979
MboII GAAGA 3 cut(s) 91, 389, 1082
MflI RGATCY 1 cut(s) 979
MhlI GDGCHC 1 cut(s) 611
MlsI TGGCCA 1 cut(s) 504
MluCI AATT 7 cut(s) 13, 199, 540, 677, 682, 917, 1087
MluNI TGGCCA 1 cut(s) 504
MlyI GAGTC 1 cut(s) 379
MmeI TCCRAC 2 cut(s) 166, 424
MnlI CCTC 4 cut(s) 122, 162, 460, 598
Mox20I TGGCCA 1 cut(s) 504
Mph1103I ATGCAT 2 cut(s) 341, 668
MroNI GCCGGC 1 cut(s) 98
MroXI GAANNNNTTC 1 cut(s) 23
MscI TGGCCA 1 cut(s) 504
MseI TTAA 5 cut(s) 293, 554, 680, 786, 876
MslI CAYNNNNRTG 2 cut(s) 935, 1097
Msp20I TGGCCA 1 cut(s) 504
MspI CCGG 2 cut(s) 99, 228
MspR9I CCNGG 2 cut(s) 229, 617
MvaI CCWGG 1 cut(s) 617
MwoI GCNNNNNNNGC 5 cut(s) 99, 238, 278, 336, 653
NaeI GCCGGC 1 cut(s) 100
NciI CCSGG 1 cut(s) 229
NdeII GATC 2 cut(s) 548, 979
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 5 cut(s) 371, 565, 639, 666, 1032
NlaIV GGNNCC 2 cut(s) 61, 150
NmuCI GTSAC 2 cut(s) 172, 235
NsiI ATGCAT 2 cut(s) 341, 668
NspI RCATGY 1 cut(s) 666
PagI TCATGA 1 cut(s) 561
PciSI GCTCTTC 1 cut(s) 372
PdiI GCCGGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 927
PflMI CCANNNNNTGG 1 cut(s) 313
PkrI GCNGC 3 cut(s) 243, 329, 905
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 615
PspGI CCWGG 1 cut(s) 615
PspN4I GGNNCC 2 cut(s) 61, 150
PsuI RGATCY 1 cut(s) 979
RsaI GTAC 3 cut(s) 363, 967, 1034
RsaNI GTAC 3 cut(s) 362, 966, 1033
RseI CAYNNNNRTG 2 cut(s) 935, 1097
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 5 cut(s) 293, 554, 680, 786, 876
SatI GCNGC 3 cut(s) 242, 328, 904
Sau3AI GATC 2 cut(s) 548, 979
SchI GAGTC 1 cut(s) 379
ScrFI CCNGG 2 cut(s) 229, 617
SduI GDGCHC 1 cut(s) 611
SetI ASST 7 cut(s) 68, 433, 463, 690, 792, 913, 988
SfaNI GCATC 1 cut(s) 675
SmiMI CAYNNNNRTG 2 cut(s) 935, 1097
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 7 cut(s) 13, 199, 540, 677, 682, 917, 1087
SsiI CCGC 6 cut(s) 91, 145, 225, 242, 272, 496
SspMI CTAG 1 cut(s) 470
StyD4I CCNGG 2 cut(s) 227, 615
TaaI ACNGT 4 cut(s) 559, 937, 1076, 1099
TaqI TCGA 1 cut(s) 8
TasI AATT 7 cut(s) 13, 199, 540, 677, 682, 917, 1087
TatI WGTACW 2 cut(s) 361, 965
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 1 cut(s) 927
Tru1I TTAA 5 cut(s) 293, 554, 680, 786, 876
Tru9I TTAA 5 cut(s) 293, 554, 680, 786, 876
TscAI CASTG 3 cut(s) 459, 940, 1104
TseFI GTSAC 2 cut(s) 172, 235
TseI GCWGC 2 cut(s) 327, 903
Tsp45I GTSAC 2 cut(s) 172, 235
TspDTI ATGAA 6 cut(s) 16, 43, 58, 919, 1081, 1083
TspGWI ACGGA 1 cut(s) 385
TspRI CASTG 3 cut(s) 459, 940, 1104
Van91I CCANNNNNTGG 1 cut(s) 313
XagI CCTNNNNNAGG 1 cut(s) 293
XapI RAATTY 2 cut(s) 199, 917
XceI RCATGY 1 cut(s) 666
XmiI GTMKAC 3 cut(s) 443, 624, 1004
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 1 cut(s) 470
Zsp2I ATGCAT 2 cut(s) 341, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.