pycom05g11100

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
14569916 .. 14572667
2752 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g11100.4

Sequence Viewer

Length: 1011 bp
ATGGGGGTTCCGGAGAATACGAAGGGGTTGATACTGGCGATGGGGTCGAGTGCGTTCATCGGCGCGAGCTTCATCCTGAAAAAGAAGGGTCTCAAGCGCGCCGGGGCCGCCGGCACCCGAGCAGGAGTTGGTGGATATACATACTTATTAGAACCACTCTGGTGGGCTGGCATGATCACTATGATTGTTGGGGAAGTTGCCAATTTCGTGGCCTATGTATATGCTCCGGCAGTTCTTGTAACCCCACTTGGTGCACTGAGTATAATTGTCAGTGCTGTTTTGGCTCACTTCTTGTTGAAGGAACGAATAACGAAAATGGGTATCGTGGGATGTGTTACCTGCATTGTGGGATCAGTCGTGATCGTGATCCATGCACCTCAGGAACATACTCTAAATTCTGTAGAGGAAATCTGGGTCCTGGCTATCCAAACAGCCTTTCTGGTTTATGTTGTAGCTACAATTTCCCTGGTGTTAGTTTTGGTCTTGCATTTTGAACCACATTATGGGCAAACGAATCTACTAGTCTACTTGGGAATCTGTTCCTTGATGGGTTCACTTACGGTTGTAAGCATAAAGGCAATTGGAATTGCAATAAAGCTAACTCTTGAGGGAGTAAGTCAGATTGCTTATCCTCAGACGTGGTTTTTTCTGACAGTTGCTATAATCTGTGTTGTTACACAGTTAAATTATCTTAACAAGGCTTTGGATACATTCAATGCAGCAATTGTTGCCCCAGTATATTATGTGATGTTTACAACTCTGACCATAATTGCTAGTGTAATAATGTTCAAGGATTGGTCTGGTCAGAATGTAAGCAGCATAGCCTCTGAAATATGTGGATTCATTACTGTGCTGTCAGGAACCATCATACTCCATGCAACAAGCGATCAGGAACCATCTGCTCCACAACCACAAGGAACTGTTACATGGTACATTAGAGGAGATTCAGTGAAGAGTTCTGAAGATGAACGTTTGCTCACTTTACAGAATTCAGATTATCCAGAACCGTGA

Protein Analysis

337

Amino Acids

36.12

Weight (kDa)

6.06

Isoelectric Point (pI)

23.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 113
AccB7I CCANNNNNTGG 1 cut(s) 503
AccI GTMKAC 1 cut(s) 525
AccII CGCG 2 cut(s) 65, 99
AccIII TCCGGA 1 cut(s) 10
AciI CCGC 1 cut(s) 108
AclI AACGTT 1 cut(s) 970
AclWI GGATC 2 cut(s) 358, 361
AcsI RAATTY 2 cut(s) 394, 988
AcuI CTGAAG 1 cut(s) 981
AdeI CACNNNGTG 1 cut(s) 251
AfaI GTAC 1 cut(s) 932
AfiI CCNNNNNNNGG 1 cut(s) 503
AgsI TTSAA 4 cut(s) 298, 494, 715, 790
AhlI ACTAGT 1 cut(s) 520
AjiI CACGTC 1 cut(s) 639
AjnI CCWGG 2 cut(s) 417, 465
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
AleI CACNNNNGTG 1 cut(s) 160
AluBI AGCT 3 cut(s) 69, 455, 598
AluI AGCT 3 cut(s) 69, 455, 598
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 95
Alw44I GTGCAC 1 cut(s) 252
AlwI GGATC 2 cut(s) 358, 361
Ama87I CYCGRG 1 cut(s) 117
Aor13HI TCCGGA 1 cut(s) 10
AoxI GGCC 2 cut(s) 105, 210
ApaLI GTGCAC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 719, 816
ApoI RAATTY 2 cut(s) 394, 988
Asp700I GAANNNNTTC 1 cut(s) 538
AspLEI GCGC 3 cut(s) 65, 99, 101
AspS9I GGNCC 2 cut(s) 105, 415
AsuC2I CCSGG 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 117
AvaII GGWCC 1 cut(s) 415
AxyI CCTNAGG 1 cut(s) 378
BaeGI GKGCMC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 2 cut(s) 731, 828
BccI CCATC 4 cut(s) 34, 541, 872, 904
BciT130I CCWGG 2 cut(s) 419, 467
BciVI GTATCC 1 cut(s) 700
BclI TGATCA 1 cut(s) 174
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 95
BcuI ACTAGT 1 cut(s) 520
BfaI CTAG 2 cut(s) 521, 774
BfmI CTRYAG 1 cut(s) 399
BfuAI ACCTGC 1 cut(s) 347
BfuI GTATCC 1 cut(s) 700
BisI GCNGC 3 cut(s) 108, 720, 817
BlsI GCNGC 3 cut(s) 109, 721, 818
Bme1390I CCNGG 3 cut(s) 103, 419, 467
Bme18I GGWCC 1 cut(s) 415
BmeT110I CYCGRG 1 cut(s) 117
BmgBI CACGTC 1 cut(s) 639
BmgT120I GGNCC 2 cut(s) 105, 415
BmiI GGNNCC 6 cut(s) 9, 106, 115, 416, 862, 894
BmrFI CCNGG 3 cut(s) 103, 419, 467
BmrI ACTGGG 1 cut(s) 728
BmuI ACTGGG 1 cut(s) 728
BpuEI CTTGAG 2 cut(s) 77, 626
BpuMI CCSGG 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 365
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 102, 465
BsaWI WCCGGW 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 933, 963
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 2 cut(s) 39, 734
Bse21I CCTNAGG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 365
BseAI TCCGGA 1 cut(s) 10
BseBI CCWGG 2 cut(s) 419, 467
BseDI CCNNGG 2 cut(s) 102, 465
BseGI GGATG 2 cut(s) 72, 335
BseJI GATNNNNATC 1 cut(s) 365
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMII CTCAG 3 cut(s) 248, 392, 647
BseNI ACTGG 2 cut(s) 39, 734
BsePI GCGCGC 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 954
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 2 cut(s) 731, 828
Bsh1236I CGCG 2 cut(s) 65, 99
BshFI GGCC 2 cut(s) 107, 212
BshNI GGYRCC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 256
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 4 cut(s) 11, 102, 111, 227
BslI CCNNNNNNNGG 1 cut(s) 503
BsmAI GTCTC 1 cut(s) 95
BsnI GGCC 2 cut(s) 107, 212
Bso31I GGTCTC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 256
Bsp13I TCCGGA 1 cut(s) 10
Bsp143I GATC 5 cut(s) 174, 350, 360, 366, 886
BspACI CCGC 1 cut(s) 108
BspANI GGCC 2 cut(s) 107, 212
BspCNI CTCAG 3 cut(s) 249, 391, 646
BspEI TCCGGA 1 cut(s) 10
BspFNI CGCG 2 cut(s) 65, 99
BspLI GGNNCC 6 cut(s) 9, 106, 115, 416, 862, 894
BspMI ACCTGC 1 cut(s) 347
BspPI GGATC 2 cut(s) 358, 361
BspT107I GGYRCC 1 cut(s) 113
BspTNI GGTCTC 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 2 cut(s) 39, 734
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 102, 465
BssHII GCGCGC 1 cut(s) 97
BssMI GATC 5 cut(s) 174, 350, 360, 366, 886
Bst2UI CCWGG 2 cut(s) 419, 467
Bst4CI ACNGT 6 cut(s) 562, 655, 681, 850, 922, 1008
Bst6I CTCTTC 1 cut(s) 947
BstAPI GCANNNNNTGC 1 cut(s) 728
BstC8I GCNNGC 4 cut(s) 67, 99, 112, 169
BstDEI CTNAG 3 cut(s) 257, 378, 633
BstF5I GGATG 2 cut(s) 72, 335
BstFNI CGCG 2 cut(s) 65, 99
BstHHI GCGC 3 cut(s) 65, 99, 101
BstKTI GATC 5 cut(s) 177, 353, 363, 369, 889
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 5 cut(s) 174, 350, 360, 366, 886
BstMWI GCNNNNNNNGC 3 cut(s) 107, 281, 728
BstNI CCWGG 2 cut(s) 419, 467
BstSCI CCNGG 3 cut(s) 101, 417, 465
BstSFI CTRYAG 1 cut(s) 399
BstSLI GKGCMC 1 cut(s) 256
BstUI CGCG 2 cut(s) 65, 99
BstV1I GCAGC 2 cut(s) 731, 828
BstXI CCANNNNNNTGG 2 cut(s) 162, 208
Bsu36I CCTNAGG 1 cut(s) 378
BsuI GTATCC 1 cut(s) 700
BsuRI GGCC 2 cut(s) 107, 212
BtgZI GCGATG 1 cut(s) 53
BtrI CACGTC 1 cut(s) 639
BtsCI GGATG 2 cut(s) 72, 335
BtsIMutI CAGTG 3 cut(s) 254, 277, 954
BveI ACCTGC 1 cut(s) 347
Cac8I GCNNGC 4 cut(s) 67, 99, 112, 169
CfoI GCGC 3 cut(s) 65, 99, 101
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 2 cut(s) 105, 415
Csp6I GTAC 1 cut(s) 931
CviAII CATG 4 cut(s) 172, 371, 875, 927
CviQI GTAC 1 cut(s) 931
DdeI CTNAG 3 cut(s) 257, 378, 633
DpnI GATC 5 cut(s) 176, 352, 362, 368, 888
DpnII GATC 5 cut(s) 174, 350, 360, 366, 886
DraIII CACNNNGTG 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 947
EarI CTCTTC 1 cut(s) 947
Eco31I GGTCTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 981
Eco81I CCTNAGG 1 cut(s) 378
Eco88I CYCGRG 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 415
EcoRI GAATTC 1 cut(s) 988
EcoRII CCWGG 2 cut(s) 417, 465
FaeI CATG 4 cut(s) 175, 374, 878, 930
FatI CATG 4 cut(s) 171, 370, 874, 926
FbaI TGATCA 1 cut(s) 174
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 3 cut(s) 108, 720, 817
FokI GGATG 2 cut(s) 59, 342
Fsp4HI GCNGC 3 cut(s) 108, 720, 817
FspBI CTAG 2 cut(s) 521, 774
GlaI GCGC 3 cut(s) 64, 98, 100
GluI GCNGC 3 cut(s) 108, 720, 817
HaeIII GGCC 2 cut(s) 107, 212
HapII CCGG 4 cut(s) 11, 102, 111, 227
HhaI GCGC 3 cut(s) 65, 99, 101
Hin1II CATG 4 cut(s) 175, 374, 878, 930
Hin6I GCGC 3 cut(s) 63, 97, 99
HinP1I GCGC 3 cut(s) 63, 97, 99
HinfI GANTC 4 cut(s) 514, 534, 840, 944
HpaII CCGG 4 cut(s) 11, 102, 111, 227
Hpy166II GTNNAC 4 cut(s) 254, 526, 554, 753
Hpy188I TCNGA 8 cut(s) 621, 636, 651, 762, 807, 829, 961, 994
Hpy188III TCNNGA 9 cut(s) 11, 76, 358, 364, 380, 605, 858, 890, 1001
Hpy8I GTNNAC 4 cut(s) 254, 526, 554, 753
HpyAV CCTTC 3 cut(s) 16, 79, 292
HpyCH4III ACNGT 6 cut(s) 562, 655, 681, 850, 922, 1008
HpyCH4IV ACGT 2 cut(s) 638, 970
HpyCH4V TGCA 7 cut(s) 254, 342, 374, 487, 590, 719, 878
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 281, 728
HpyF3I CTNAG 3 cut(s) 257, 378, 633
HpySE526I ACGT 2 cut(s) 638, 970
Hsp92II CATG 4 cut(s) 175, 374, 878, 930
HspAI GCGC 3 cut(s) 63, 97, 99
Kpn2I TCCGGA 1 cut(s) 10
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 174
Kzo9I GATC 5 cut(s) 174, 350, 360, 366, 886
LmnI GCTCC 2 cut(s) 229, 907
Lsp1109I GCAGC 2 cut(s) 731, 828
MaeI CTAG 2 cut(s) 521, 774
MaeII ACGT 2 cut(s) 638, 970
MaeIII GTNAC 4 cut(s) 238, 334, 673, 922
MalI GATC 5 cut(s) 176, 352, 362, 368, 888
MboI GATC 5 cut(s) 174, 350, 360, 366, 886
MboII GAAGA 2 cut(s) 964, 974
MfeI CAATTG 2 cut(s) 579, 723
MhlI GDGCHC 1 cut(s) 256
MnlI CCTC 6 cut(s) 387, 397, 601, 642, 835, 932
MroI TCCGGA 1 cut(s) 10
MroNI GCCGGC 1 cut(s) 110
MroXI GAANNNNTTC 1 cut(s) 538
MseI TTAA 2 cut(s) 683, 693
MslI CAYNNNNRTG 2 cut(s) 160, 848
MspI CCGG 4 cut(s) 11, 102, 111, 227
MspR9I CCNGG 3 cut(s) 103, 419, 467
MunI CAATTG 2 cut(s) 579, 723
MvaI CCWGG 2 cut(s) 419, 467
MvnI CGCG 2 cut(s) 65, 99
MwoI GCNNNNNNNGC 3 cut(s) 107, 281, 728
NaeI GCCGGC 1 cut(s) 112
NciI CCSGG 1 cut(s) 103
NdeII GATC 5 cut(s) 174, 350, 360, 366, 886
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 4 cut(s) 175, 374, 878, 930
NlaIV GGNNCC 6 cut(s) 9, 106, 115, 416, 862, 894
OliI CACNNNNGTG 1 cut(s) 160
PauI GCGCGC 1 cut(s) 97
PdiI GCCGGC 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 538
PfeI GAWTC 4 cut(s) 514, 534, 840, 944
PflMI CCANNNNNTGG 1 cut(s) 503
PkrI GCNGC 3 cut(s) 109, 721, 818
PpuMI RGGWCCY 1 cut(s) 415
Psp1406I AACGTT 1 cut(s) 970
Psp5II RGGWCCY 1 cut(s) 415
Psp6I CCWGG 2 cut(s) 417, 465
PspGI CCWGG 2 cut(s) 417, 465
PspN4I GGNNCC 6 cut(s) 9, 106, 115, 416, 862, 894
PspPI GGNCC 2 cut(s) 105, 415
PspPPI RGGWCCY 1 cut(s) 415
PteI GCGCGC 1 cut(s) 97
RsaI GTAC 1 cut(s) 932
RsaNI GTAC 1 cut(s) 931
RseI CAYNNNNRTG 2 cut(s) 160, 848
SaqAI TTAA 2 cut(s) 683, 693
SatI GCNGC 3 cut(s) 108, 720, 817
Sau3AI GATC 5 cut(s) 174, 350, 360, 366, 886
Sau96I GGNCC 2 cut(s) 105, 415
ScrFI CCNGG 3 cut(s) 103, 419, 467
SduI GDGCHC 1 cut(s) 256
SetI ASST 7 cut(s) 71, 341, 379, 457, 600, 641, 973
SfcI CTRYAG 1 cut(s) 399
SinI GGWCC 1 cut(s) 415
SmiMI CAYNNNNRTG 2 cut(s) 160, 848
SmlI CTYRAG 2 cut(s) 92, 605
SmoI CTYRAG 2 cut(s) 92, 605
SpeI ACTAGT 1 cut(s) 520
SsiI CCGC 1 cut(s) 108
SspMI CTAG 2 cut(s) 521, 774
StyD4I CCNGG 3 cut(s) 101, 417, 465
TaaI ACNGT 6 cut(s) 562, 655, 681, 850, 922, 1008
TaiI ACGT 2 cut(s) 641, 973
TaqI TCGA 1 cut(s) 47
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 4 cut(s) 514, 534, 840, 944
Tru1I TTAA 2 cut(s) 683, 693
Tru9I TTAA 2 cut(s) 683, 693
TscAI CASTG 3 cut(s) 261, 277, 954
TseI GCWGC 2 cut(s) 719, 816
TspDTI ATGAA 4 cut(s) 46, 61, 832, 981
TspRI CASTG 3 cut(s) 261, 277, 954
Van91I CCANNNNNTGG 1 cut(s) 503
VneI GTGCAC 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 415
XapI RAATTY 2 cut(s) 394, 988
XmiI GTMKAC 1 cut(s) 525
XmnI GAANNNNTTC 1 cut(s) 538
XspI CTAG 2 cut(s) 521, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.