Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001288

Physical Location & Seq

Genomic Coordinates Reverse (-)

7495455 .. 7496990

Gene Structure 1536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G22570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGAAATGAACTCCCCACACGAAAAGGCGGTGCAAGCTATCCGTTATGGCCATAGCTGCGCCATGCGGTTGAAGAGGCGGCTCAACCATCCAATGGCTGATGGTGGACCGCTTTCAAGTTATGATCTTGCTAAATCGATCGTTGAAAGTTTTTCCAATGCCATTTCAATCTTATCTGCTAAACCAGAAACCGAAGATGATCAGTTTTCTGATTTATCTTCTAGGGATTCTTCTCCTCCTCCACAGGGGAGCCCCTCCAAGAAAAGAAAGATTGATAGTACAAATTCAAGTGAGAATTGGAGGGACGATTCACCGGATCCGATTTACTACGACGGGTATCTTTGGAGGAAATATGGTCAAAAGAGTATAAAAAAATCTAATCACCAAAGGAGTTACTATAGATGTTCTTACAACAAAGATCATAACTGCGAAGCAAGAAAGCATGAACAAAAGATCAAAGACAATCCTCCGGTTTACCGAACCACTTACTTTGGCCACCACACTTGCAAAACCGAACATAATCTAGATGCCATTTTTATTGCCGGACAAGATCCCCTAGATGACTTTAAAAGTACCCAAATGATCCGATTCGGAAAAGATCAGGATCAGGAGAAGGAAAGCCGCTCGAACGGTTTCTCCTTATCGGTTAAGCATGAAGAAGATATCATCAAAGAGCAAGCTATAGATCAGTACCGTGAGATAACCAGTAATGACCAAGATTGTCAAGATGTTATAGAAGAATATCTATCATCACCATCAGGCTCTTATCCTCCTTCATCGTCATCTGGCAGTGAAAGTGCTGACTTTAATTCTGATTTGTTATTTGACAACCCAGACTCGTGGGATCGTTATGATCAGTTTTACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

289

Amino Acids

33.27

Weight (kDa)

5.4

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	111 - 170	2.3e-20	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22570
fragaria_vesca	FvH4_6g09650 FvH4_6g09710 FvH4_6g09710 FvH4_6g09730 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09750 FvH4_6g09760
malus_domestica	MD04G1175500.v1.1 MD04G1175600.v1.1 MD12G1189200.v1.1 MD12G1189400.v1.1 MD12G1189600.v1.1 MD12G1189700.v1.1 MD12G1189900.v1.1
prunus_persica	Prupe.6G294900_v2.0.a1 Prupe.6G295000_v2.0.a1 Prupe.6G295100_v2.0.a1
pyrus_communis	pycom04g15480 pycom04g15490 pycom12g17650 pycom12g17690 pycom12g17700 pycom12g17730
rosa_chinensis	RchiOBHm_Chr3g0460351 RchiOBHm_Chr3g0460361
rosa_laevigata	RLG00000025018 RLG00000025019 RLG00000025027 RLG00000025113
rosa_multiflora	Rmu_sc0000449.1_g000005 Rmu_sc0004267.1_g000019
rosa_roxburghii	Rroxscaffold_6G00419560 Rroxscaffold_6G00419590
rosa_rugosa	Rorug03G0033500 Rorug03G0033500 Rorug03G0041400 Rorug03G0041800 Rorug03G0042000
rosa_samantha	Rh3AG100000 Rh3AG100100 Rh3BG094800 Rh3BG103900 Rh3BG104000 Rh3CG105700 Rh3CG105800 Rh3DG105300 Rh3DG105400
rosa_wichuraiana	Rw3G008480 Rw3G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	624
AciI	CCGC	5 cut(s)	29, 67, 79, 110, 622
AclWI	GGATC	6 cut(s)	311, 324, 545, 577, 612, 852
AcoI	YGGCCR	2 cut(s)	49, 493
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	3 cut(s)	280, 574, 692
AfiI	CCNNNNNNNGG	2 cut(s)	94, 245
AgsI	TTSAA	5 cut(s)	73, 117, 146, 168, 288
AloI	GAACNNNNNNTCC	2 cut(s)	620, 652
AluBI	AGCT	3 cut(s)	38, 57, 680
AluI	AGCT	3 cut(s)	38, 57, 680
AlwI	GGATC	6 cut(s)	311, 324, 545, 577, 612, 852
AoxI	GGCC	2 cut(s)	49, 493
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	283
Asp700I	GAANNNNTTC	1 cut(s)	632
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	107
AsuHPI	GGTGA	3 cut(s)	303, 374, 744
AvaII	GGWCC	1 cut(s)	107
BalI	TGGCCA	2 cut(s)	51, 495
BamHI	GGATCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	254
BauI	CACGAG	1 cut(s)	838
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	3 cut(s)	95, 96, 763
BclI	TGATCA	2 cut(s)	199, 853
BfaI	CTAG	3 cut(s)	222, 524, 557
BfmI	CTRYAG	2 cut(s)	397, 681
BisI	GCNGC	3 cut(s)	58, 80, 622
BlsI	GCNGC	3 cut(s)	59, 81, 623
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	251, 318
BmsI	GCATC	1 cut(s)	517
Bsa29I	ATCGAT	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	603
BsaWI	WCCGGW	2 cut(s)	313, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 245
Bse1I	ACTGG	1 cut(s)	705
Bse8I	GATNNNNATC	1 cut(s)	603
BseCI	ATCGAT	1 cut(s)	137
BseGI	GGATG	1 cut(s)	88
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	2 cut(s)	94, 245
BseNI	ACTGG	1 cut(s)	705
BseRI	GAGGAG	2 cut(s)	225, 228
BseXI	GCAGC	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	51, 495
BshVI	ATCGAT	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	141
BsiSI	CCGG	3 cut(s)	314, 470, 543
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	2 cut(s)	94, 245
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	51, 495
Bsp1286I	GDGCHC	1 cut(s)	254
BspACI	CCGC	5 cut(s)	29, 67, 79, 110, 622
BspANI	GGCC	2 cut(s)	51, 495
BspDI	ATCGAT	1 cut(s)	137
BspLI	GGNNCC	2 cut(s)	251, 318
BspPI	GGATC	6 cut(s)	311, 324, 545, 577, 612, 852
BsrBI	CCGCTC	1 cut(s)	624
BsrI	ACTGG	1 cut(s)	705
BssSI	CACGAG	1 cut(s)	838
Bst2BI	CACGAG	1 cut(s)	838
Bst4CI	ACNGT	2 cut(s)	632, 695
Bst6I	CTCTTC	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	36, 678
BstF5I	GGATG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	62
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 57
BstSFI	CTRYAG	2 cut(s)	397, 681
BstV1I	GCAGC	1 cut(s)	44
BstX2I	RGATCY	2 cut(s)	316, 550
BstXI	CCANNNNNNTGG	1 cut(s)	840
BstYI	RGATCY	2 cut(s)	316, 550
Bsu15I	ATCGAT	1 cut(s)	137
BsuRI	GGCC	2 cut(s)	51, 495
BsuTUI	ATCGAT	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	1 cut(s)	796
BtsIMutI	CAGTG	1 cut(s)	796
Cac8I	GCNNGC	2 cut(s)	36, 678
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	107
ClaI	ATCGAT	1 cut(s)	137
Csp6I	GTAC	3 cut(s)	279, 573, 691
CspCI	CAANNNNNGTGG	4 cut(s)	472, 485, 507, 520
CviAII	CATG	3 cut(s)	64, 443, 653
CviQI	GTAC	3 cut(s)	279, 573, 691
DraI	TTTAAA	1 cut(s)	568
EaeI	YGGCCR	2 cut(s)	49, 493
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	254
Eco32I	GATATC	1 cut(s)	664
Eco47I	GGWCC	1 cut(s)	107
EcoRV	GATATC	1 cut(s)	664
EcoT38I	GRGCYC	1 cut(s)	254
FaeI	CATG	3 cut(s)	67, 446, 656
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	3 cut(s)	63, 442, 652
FbaI	TGATCA	2 cut(s)	199, 853
Fnu4HI	GCNGC	3 cut(s)	58, 80, 622
FokI	GGATG	1 cut(s)	75
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	3 cut(s)	58, 80, 622
FspBI	CTAG	3 cut(s)	222, 524, 557
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	3 cut(s)	58, 80, 622
HaeIII	GGCC	2 cut(s)	51, 495
HapII	CCGG	3 cut(s)	314, 470, 543
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	67, 446, 656
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	4 cut(s)	227, 308, 588, 836
HpaII	CCGG	3 cut(s)	314, 470, 543
HphI	GGTGA	3 cut(s)	303, 374, 744
Hpy166II	GTNNAC	2 cut(s)	107, 475
Hpy188I	TCNGA	5 cut(s)	211, 321, 587, 593, 814
Hpy188III	TCNNGA	4 cut(s)	524, 602, 608, 725
Hpy8I	GTNNAC	2 cut(s)	107, 475
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	2 cut(s)	607, 783
HpyCH4III	ACNGT	2 cut(s)	632, 695
HpyCH4V	TGCA	2 cut(s)	34, 507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 57
Hsp92II	CATG	3 cut(s)	67, 446, 656
HspAI	GCGC	1 cut(s)	60
Ksp22I	TGATCA	2 cut(s)	199, 853
LmnI	GCTCC	1 cut(s)	249
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	3 cut(s)	222, 524, 557
MaeIII	GTNAC	1 cut(s)	392
MbiI	CCGCTC	1 cut(s)	624
MboII	GAAGA	7 cut(s)	85, 206, 210, 222, 668, 671, 749
MflI	RGATCY	2 cut(s)	316, 550
MhlI	GDGCHC	1 cut(s)	254
MlsI	TGGCCA	2 cut(s)	51, 495
MluCI	AATT	3 cut(s)	283, 295, 808
MluNI	TGGCCA	2 cut(s)	51, 495
MlyI	GAGTC	1 cut(s)	830
MnlI	CCTC	8 cut(s)	69, 246, 249, 265, 294, 339, 477, 780
Mox20I	TGGCCA	2 cut(s)	51, 495
MroXI	GAANNNNTTC	1 cut(s)	632
MscI	TGGCCA	2 cut(s)	51, 495
MseI	TTAA	3 cut(s)	567, 648, 807
Msp20I	TGGCCA	2 cut(s)	51, 495
MspI	CCGG	3 cut(s)	314, 470, 543
MwoI	GCNNNNNNNGC	2 cut(s)	35, 57
NlaIII	CATG	3 cut(s)	67, 446, 656
NlaIV	GGNNCC	2 cut(s)	251, 318
PdmI	GAANNNNTTC	1 cut(s)	632
PfeI	GAWTC	3 cut(s)	227, 308, 588
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	3 cut(s)	59, 81, 623
Ple19I	CGATCG	1 cut(s)	141
PleI	GAGTC	1 cut(s)	830
PpsI	GAGTC	1 cut(s)	830
PspN4I	GGNNCC	2 cut(s)	251, 318
PspPI	GGNCC	1 cut(s)	107
PsuI	RGATCY	2 cut(s)	316, 550
PvuI	CGATCG	1 cut(s)	141
RsaI	GTAC	3 cut(s)	280, 574, 692
RsaNI	GTAC	3 cut(s)	279, 573, 691
SaqAI	TTAA	3 cut(s)	567, 648, 807
SatI	GCNGC	3 cut(s)	58, 80, 622
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	1 cut(s)	830
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	3 cut(s)	40, 59, 682
SfaNI	GCATC	1 cut(s)	517
SfcI	CTRYAG	2 cut(s)	397, 681
SinI	GGWCC	1 cut(s)	107
Sse9I	AATT	3 cut(s)	283, 295, 808
SsiI	CCGC	5 cut(s)	29, 67, 79, 110, 622
SspMI	CTAG	3 cut(s)	222, 524, 557
TaaI	ACNGT	2 cut(s)	632, 695
TaqI	TCGA	2 cut(s)	137, 626
TasI	AATT	3 cut(s)	283, 295, 808
TatI	WGTACW	1 cut(s)	278
TauI	GCSGC	2 cut(s)	82, 624
TfiI	GAWTC	3 cut(s)	227, 308, 588
Tru1I	TTAA	3 cut(s)	567, 648, 807
Tru9I	TTAA	3 cut(s)	567, 648, 807
TscAI	CASTG	1 cut(s)	796
TseI	GCWGC	1 cut(s)	57
TspDTI	ATGAA	4 cut(s)	23, 459, 669, 765
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	796
Van91I	CCANNNNNTGG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	107
XapI	RAATTY	1 cut(s)	283
XbaI	TCTAGA	1 cut(s)	523
XmnI	GAANNNNTTC	1 cut(s)	632
XspI	CTAG	3 cut(s)	222, 524, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.