Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001288

Physical Location & Seq

Genomic Coordinates Forward (+)

5802595 .. 5805282

Gene Structure 2688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAGTGTACTTGGCCAGCTTCACGGAAACTTCAGGAAAAGGTAAAGGAAGAACTGCTCCGAGGGCATGAACTTGCAAATCAGCTTCGCTCGGTAGTCGGTAATAGTGATGGTGGATTGTTGGCCAAAGGTTTTGTTAAGAAGATTGTGTTCTCGTTCACGACTAGCCTTTCCCTCTTAACTGGGAATCATGAGTCTAAGGGGGAGCATATTCAAGTCAGTACTGGTAGTAGTACTTTTGCTCTTCCTACTATAGTAGAATCATCTTCCAGCTGGGATGCTCTCAAGACGATCAAGAGTAGGGAAACGTTTACGGATAGTAGTAGTTCTTCCAAGAAAAGAAAAATTTCACACTCATGGAGTAGAGACGCTCCTGATTTCAATGATGATGGTCATGCATGGAGAAAGTACGGCCAGAAACAGATCCTTAATGCCTGGCACCCAAGGAGCTACTTCAGGTGCAGTCATAAGTATGAACAAGGCTGCAAGGCGACCAAGCAGGTGCAGAAAGTTGAAGATGATCCATCGTTGTTTCGGACTACATATTTCGGAAATCACACATGCAAACATAGCTTACTCAAATCTCCTGAACTCATCCTTGATAACATAATCGGTGGTAGTCCCATAGAAGAGTCTAATTCCACGTTTATGATCACATTTGAGAACAGGGGCGGATCCAAGCCTAGGGTTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

232

Amino Acids

25.95

Weight (kDa)

9.32

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	129 - 189	2.9e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22570
fragaria_vesca	FvH4_6g09650 FvH4_6g09710 FvH4_6g09710 FvH4_6g09730 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09750 FvH4_6g09760
malus_domestica	MD04G1175500.v1.1 MD04G1175600.v1.1 MD12G1189200.v1.1 MD12G1189400.v1.1 MD12G1189600.v1.1 MD12G1189700.v1.1 MD12G1189900.v1.1
prunus_persica	Prupe.6G294900_v2.0.a1 Prupe.6G295000_v2.0.a1 Prupe.6G295100_v2.0.a1
pyrus_communis	pycom04g15480 pycom04g15490 pycom12g17650 pycom12g17690 pycom12g17700 pycom12g17730
rosa_chinensis	RchiOBHm_Chr3g0460351 RchiOBHm_Chr3g0460361
rosa_laevigata	RLG00000025018 RLG00000025019 RLG00000025027 RLG00000025113
rosa_multiflora	Rmu_sc0000449.1_g000005 Rmu_sc0004267.1_g000019
rosa_roxburghii	Rroxscaffold_6G00419560 Rroxscaffold_6G00419590
rosa_rugosa	Rorug03G0033500 Rorug03G0033500 Rorug03G0041400 Rorug03G0041800 Rorug03G0042000
rosa_samantha	Rh3AG100000 Rh3AG100100 Rh3BG094800 Rh3BG103900 Rh3BG104000 Rh3CG105700 Rh3CG105800 Rh3DG105300 Rh3DG105400
rosa_wichuraiana	Rw3G008480 Rw3G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	490
Acc36I	ACCTGC	1 cut(s)	490
AccB1I	GGYRCC	1 cut(s)	438
AciI	CCGC	1 cut(s)	672
AclI	AACGTT	1 cut(s)	308
AclWI	GGATC	4 cut(s)	418, 515, 669, 682
AcoI	YGGCCR	3 cut(s)	14, 123, 412
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	2 cut(s)	17, 439
AfaI	GTAC	4 cut(s)	10, 223, 235, 410
AfiI	CCNNNNNNNGG	1 cut(s)	684
AgsI	TTSAA	3 cut(s)	215, 382, 515
AjnI	CCWGG	1 cut(s)	434
AluBI	AGCT	5 cut(s)	20, 85, 273, 450, 573
AluI	AGCT	5 cut(s)	20, 85, 273, 450, 573
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	4 cut(s)	418, 515, 669, 682
AoxI	GGCC	3 cut(s)	14, 123, 412
ApeKI	GCWGC	1 cut(s)	483
ApoI	RAATTY	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	346
AspA2I	CCTAGG	1 cut(s)	683
AvrII	CCTAGG	1 cut(s)	683
BalI	TGGCCA	2 cut(s)	16, 125
BamHI	GGATCC	1 cut(s)	674
BanI	GGYRCC	1 cut(s)	438
BarI	GAAGNNNNNNTAC	2 cut(s)	313, 345
BbvI	GCAGC	1 cut(s)	470
BccI	CCATC	3 cut(s)	104, 383, 532
BceAI	ACGGC	1 cut(s)	427
BciT130I	CCWGG	1 cut(s)	436
BclI	TGATCA	1 cut(s)	651
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	3 cut(s)	165, 684, 694
BfmI	CTRYAG	1 cut(s)	252
BfuAI	ACCTGC	1 cut(s)	490
BisI	GCNGC	1 cut(s)	484
BlnI	CCTAGG	1 cut(s)	683
BlsI	GCNGC	1 cut(s)	485
BmcAI	AGTACT	2 cut(s)	223, 235
Bme1390I	CCNGG	1 cut(s)	436
BmiI	GGNNCC	2 cut(s)	440, 676
BmrFI	CCNGG	1 cut(s)	436
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	1 cut(s)	268
BmuI	ACTGGG	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	61, 443, 683
Bsc4I	CCNNNNNNNGG	1 cut(s)	684
Bse1I	ACTGG	2 cut(s)	187, 229
BseBI	CCWGG	1 cut(s)	436
BseDI	CCNNGG	3 cut(s)	61, 443, 683
BseGI	GGATG	2 cut(s)	283, 594
BseLI	CCNNNNNNNGG	1 cut(s)	684
BseNI	ACTGG	2 cut(s)	187, 229
BseXI	GCAGC	1 cut(s)	470
BseYI	CCCAGC	1 cut(s)	273
BsgI	GTGCAG	2 cut(s)	481, 524
BshFI	GGCC	3 cut(s)	16, 125, 414
BshNI	GGYRCC	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	606
BslI	CCNNNNNNNGG	1 cut(s)	684
BsmAI	GTCTC	1 cut(s)	360
BsmBI	CGTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	606
BsnI	GGCC	3 cut(s)	16, 125, 414
Bsp143I	GATC	5 cut(s)	291, 423, 520, 651, 674
BspACI	CCGC	1 cut(s)	672
BspANI	GGCC	3 cut(s)	16, 125, 414
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	440, 676
BspMI	ACCTGC	1 cut(s)	490
BspPI	GGATC	4 cut(s)	418, 515, 669, 682
BspQI	GCTCTTC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	438
BsrI	ACTGG	2 cut(s)	187, 229
BssECI	CCNNGG	3 cut(s)	61, 443, 683
BssMI	GATC	5 cut(s)	291, 423, 520, 651, 674
BssT1I	CCWWGG	2 cut(s)	443, 683
Bst2UI	CCWGG	1 cut(s)	436
Bst6I	CTCTTC	2 cut(s)	249, 624
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	283, 594
BstKTI	GATC	5 cut(s)	294, 426, 523, 654, 677
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	5 cut(s)	291, 423, 520, 651, 674
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 570
BstNI	CCWGG	1 cut(s)	436
BstNSI	RCATGY	1 cut(s)	564
BstSCI	CCNGG	1 cut(s)	434
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	470
BstX2I	RGATCY	2 cut(s)	423, 674
BstYI	RGATCY	2 cut(s)	423, 674
BsuRI	GGCC	3 cut(s)	16, 125, 414
BtsCI	GGATG	2 cut(s)	283, 594
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	1 cut(s)	18
CciI	TCATGA	1 cut(s)	190
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	4 cut(s)	9, 222, 234, 409
CviAII	CATG	6 cut(s)	68, 191, 357, 395, 399, 561
CviQI	GTAC	4 cut(s)	9, 222, 234, 409
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	5 cut(s)	293, 425, 522, 653, 676
DpnII	GATC	5 cut(s)	291, 423, 520, 651, 674
EaeI	YGGCCR	3 cut(s)	14, 123, 412
Eam1104I	CTCTTC	2 cut(s)	249, 624
EarI	CTCTTC	2 cut(s)	249, 624
EciI	GGCGGA	1 cut(s)	687
Eco130I	CCWWGG	2 cut(s)	443, 683
Eco57I	CTGAAG	2 cut(s)	17, 439
EcoRII	CCWGG	1 cut(s)	434
EcoT14I	CCWWGG	2 cut(s)	443, 683
EcoT22I	ATGCAT	1 cut(s)	400
ErhI	CCWWGG	2 cut(s)	443, 683
Esp3I	CGTCTC	1 cut(s)	360
FaeI	CATG	6 cut(s)	71, 194, 360, 398, 402, 564
FaqI	GGGAC	1 cut(s)	606
FatI	CATG	6 cut(s)	67, 190, 356, 394, 398, 560
FbaI	TGATCA	1 cut(s)	651
Fnu4HI	GCNGC	1 cut(s)	484
FokI	GGATG	2 cut(s)	290, 581
Fsp4HI	GCNGC	1 cut(s)	484
FspBI	CTAG	3 cut(s)	165, 684, 694
GluI	GCNGC	1 cut(s)	484
GsaI	CCCAGC	1 cut(s)	277
HaeIII	GGCC	3 cut(s)	16, 125, 414
HgaI	GACGC	1 cut(s)	377
Hin1II	CATG	6 cut(s)	71, 194, 360, 398, 402, 564
HinfI	GANTC	4 cut(s)	187, 194, 260, 632
Hpy166II	GTNNAC	3 cut(s)	9, 159, 312
Hpy188I	TCNGA	3 cut(s)	62, 537, 551
Hpy188III	TCNNGA	7 cut(s)	35, 160, 191, 286, 295, 374, 587
Hpy8I	GTNNAC	3 cut(s)	9, 159, 312
HpyCH4IV	ACGT	2 cut(s)	308, 644
HpyCH4V	TGCA	6 cut(s)	77, 398, 462, 486, 505, 564
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 570
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	2 cut(s)	308, 644
Hsp92II	CATG	6 cut(s)	71, 194, 360, 398, 402, 564
Ksp22I	TGATCA	1 cut(s)	651
Kzo9I	GATC	5 cut(s)	291, 423, 520, 651, 674
LguI	GCTCTTC	1 cut(s)	249
LmnI	GCTCC	4 cut(s)	63, 205, 376, 447
Lsp1109I	GCAGC	1 cut(s)	470
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	3 cut(s)	165, 684, 694
MaeII	ACGT	2 cut(s)	308, 644
MalI	GATC	5 cut(s)	293, 425, 522, 653, 676
MboI	GATC	5 cut(s)	291, 423, 520, 651, 674
MboII	GAAGA	7 cut(s)	62, 154, 236, 258, 321, 527, 641
MflI	RGATCY	2 cut(s)	423, 674
MlsI	TGGCCA	2 cut(s)	16, 125
MluCI	AATT	2 cut(s)	345, 637
MluNI	TGGCCA	2 cut(s)	16, 125
MlyI	GAGTC	2 cut(s)	203, 641
MnlI	CCTC	2 cut(s)	56, 185
Mox20I	TGGCCA	2 cut(s)	16, 125
Mph1103I	ATGCAT	1 cut(s)	400
MroXI	GAANNNNTTC	1 cut(s)	346
MscI	TGGCCA	2 cut(s)	16, 125
MseI	TTAA	3 cut(s)	138, 179, 429
MslI	CAYNNNNRTG	3 cut(s)	355, 471, 647
Msp20I	TGGCCA	2 cut(s)	16, 125
MspA1I	CMGCKG	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	436
MwoI	GCNNNNNNNGC	2 cut(s)	64, 570
NdeII	GATC	5 cut(s)	291, 423, 520, 651, 674
NlaIII	CATG	6 cut(s)	71, 194, 360, 398, 402, 564
NlaIV	GGNNCC	2 cut(s)	440, 676
NsiI	ATGCAT	1 cut(s)	400
NspI	RCATGY	1 cut(s)	564
PagI	TCATGA	1 cut(s)	190
PaqCI	CACCTGC	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	346
PfeI	GAWTC	2 cut(s)	187, 260
PkrI	GCNGC	1 cut(s)	485
PleI	GAGTC	2 cut(s)	202, 640
PpsI	GAGTC	2 cut(s)	202, 640
Psp1406I	AACGTT	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	434
PspFI	CCCAGC	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	2 cut(s)	440, 676
PsuI	RGATCY	2 cut(s)	423, 674
PvuII	CAGCTG	1 cut(s)	273
RsaI	GTAC	4 cut(s)	10, 223, 235, 410
RsaNI	GTAC	4 cut(s)	9, 222, 234, 409
RseI	CAYNNNNRTG	3 cut(s)	355, 471, 647
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	3 cut(s)	138, 179, 429
SatI	GCNGC	1 cut(s)	484
Sau3AI	GATC	5 cut(s)	291, 423, 520, 651, 674
ScaI	AGTACT	2 cut(s)	223, 235
SchI	GAGTC	2 cut(s)	203, 641
ScrFI	CCNGG	1 cut(s)	436
SfaNI	GCATC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	3 cut(s)	355, 471, 647
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	345, 637
SsiI	CCGC	1 cut(s)	672
SspMI	CTAG	3 cut(s)	165, 684, 694
StyD4I	CCNGG	1 cut(s)	434
StyI	CCWWGG	2 cut(s)	443, 683
TaiI	ACGT	2 cut(s)	311, 647
TasI	AATT	2 cut(s)	345, 637
TatI	WGTACW	3 cut(s)	8, 221, 233
TfiI	GAWTC	2 cut(s)	187, 260
Tru1I	TTAA	3 cut(s)	138, 179, 429
Tru9I	TTAA	3 cut(s)	138, 179, 429
TseI	GCWGC	1 cut(s)	483
TspDTI	ATGAA	2 cut(s)	84, 489
TspGWI	ACGGA	2 cut(s)	40, 329
XapI	RAATTY	1 cut(s)	345
XceI	RCATGY	1 cut(s)	564
XmaJI	CCTAGG	1 cut(s)	683
XmnI	GAANNNNTTC	1 cut(s)	346
XspI	CTAG	3 cut(s)	165, 684, 694
ZrmI	AGTACT	2 cut(s)	223, 235
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.