FvH4_6g09760
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
5816699 .. 5818477
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09760.t1

Sequence Viewer

Length: 1020 bp
ATGGAGCAGTGGACTTGGCCGGAGAGTGTGTCGTCCAACCAGAAGAGGGTGATGGAGGAGCTGGTTCAAGGCCGGGAGATGGCTAATCAGCTTCGGGGGGTTCTCAGAAGTGACGTCAGATCGGCGGAGGGTCTTGTGACGAAGATCTTGGGGTCGCTCACCAACACCCTTCTTATCTTGAATGGCAGTCAAGTGGATGCTAAGGAGGAGCTCATTTCTCAGGTTCATGCCAATAGTAATACTGGTGCTGTTACTGCTTCTGCTTCTGGTTCTGGTTCTGCTACTGCTGGCCTTGTTTCATCGTCTTGGGATGTGGTTCATGACGATGCTATGATGAAGTCGGAGGATTCGAATGAAGAGAGTTGCAAGAGTACCGAAACGTTCAAGGATCGCAGGGGTTCTTACAAGAGAAAAAAAACTTCACATTCATGGACCAAAGACACTCTGGATTTAGTGGACGATGGTCATGCATGGAGAAAGTACGGACAAAAGATGATCCAAAATAACAAACATCCAAGGAACTACTTCAGATGCACTCATAAGTTTGATCAAGGCTGCAAAGCAACCAAACACGTTCAAAGGATTAAAGATGAACCCCAACTCTTTCGGACCACATACTATGGCAATCACACATGCGCAGACTATCTCAGAGCTCCGGAACTCATCTTAGATTGTTCAAGTCGCGAAGACTCTTCCCAGAAAATGATCCGATTCAACAGCACCGATAACGATGAACATCCTTTTTTCTCAGCCTTCACATCGACCAAAAACGAGGGCGTCAAGGAAGAAGAGATGATCAAACCATTCAAACCAATTAGTGACCACGATCACGTGACCTACCACAACCAGTCACCGTCGTCCTCTGCTTATATCATGTCGCCGGGTCCATGTGTGCTTGAGTCGTCCGGCGGGACTTTGAATGGTTTCTCATCGACTATCGCAAATGATCACGATGATGTGATTTCTAGTATGATGATTGAATACTTTGATAATGAAATAGATTTTCCATATGAGTTTTGA

Protein Analysis

340

Amino Acids

38.21

Weight (kDa)

5.64

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 153 - 212 6.2e-25 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 117
Acc16I TGCGCA 1 cut(s) 637
AccII CGCG 1 cut(s) 684
AccIII TCCGGA 1 cut(s) 655
AciI CCGC 2 cut(s) 125, 909
AclI AACGTT 1 cut(s) 380
AclWI GGATC 3 cut(s) 396, 490, 700
AcoI YGGCCR 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 511
AcvI CACGTG 1 cut(s) 832
AcyI GRCGYC 2 cut(s) 114, 777
AfaI GTAC 2 cut(s) 373, 482
AfiI CCNNNNNNNGG 2 cut(s) 46, 79
AflIII ACRYGT 1 cut(s) 571
AgsI TTSAA 9 cut(s) 68, 181, 385, 578, 678, 715, 808, 919, 980
AluBI AGCT 4 cut(s) 61, 91, 211, 653
AluI AGCT 4 cut(s) 61, 91, 211, 653
Alw21I GWGCWC 2 cut(s) 213, 655
AlwI GGATC 3 cut(s) 396, 490, 700
Aor13HI TCCGGA 1 cut(s) 655
AoxI GGCC 3 cut(s) 17, 70, 289
ApeKI GCWGC 1 cut(s) 555
Asp700I GAANNNNTTC 2 cut(s) 524, 923
AspLEI GCGC 1 cut(s) 638
AspS9I GGNCC 3 cut(s) 432, 609, 884
AsuC2I CCSGG 2 cut(s) 74, 882
AsuHPI GGTGA 3 cut(s) 61, 151, 843
AsuII TTCGAA 1 cut(s) 350
AvaII GGWCC 3 cut(s) 432, 609, 884
BanII GRGCYC 2 cut(s) 213, 655
BbrPI CACGTG 1 cut(s) 832
BbsI GAAGAC 1 cut(s) 693
Bbv12I GWGCWC 2 cut(s) 213, 655
BbvI GCAGC 1 cut(s) 542
BccI CCATC 3 cut(s) 46, 73, 455
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BclI TGATCA 3 cut(s) 547, 795, 946
BcnI CCSGG 2 cut(s) 74, 882
BfaI CTAG 1 cut(s) 966
BglII AGATCT 1 cut(s) 144
BisI GCNGC 1 cut(s) 556
BlsI GCNGC 1 cut(s) 557
Bme1390I CCNGG 2 cut(s) 74, 882
Bme18I GGWCC 3 cut(s) 432, 609, 884
BmgT120I GGNCC 3 cut(s) 432, 609, 884
BmiI GGNNCC 1 cut(s) 885
BmrFI CCNGG 2 cut(s) 74, 882
BmsI GCATC 3 cut(s) 187, 316, 521
BoxI GACNNNNGTC 1 cut(s) 462
BpiI GAAGAC 1 cut(s) 693
Bpu10I CCTNAGC 1 cut(s) 201
Bpu14I TTCGAA 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 917
BpuMI CCSGG 2 cut(s) 74, 882
BsaAI YACGTR 1 cut(s) 832
BsaBI GATNNNNATC 1 cut(s) 735
BsaHI GRCGYC 2 cut(s) 114, 777
BsaJI CCNNGG 1 cut(s) 515
BsaWI WCCGGW 1 cut(s) 655
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 79
Bse1I ACTGG 2 cut(s) 247, 847
Bse8I GATNNNNATC 1 cut(s) 735
BseAI TCCGGA 1 cut(s) 655
BseDI CCNNGG 1 cut(s) 515
BseGI GGATG 4 cut(s) 202, 316, 511, 736
BseJI GATNNNNATC 1 cut(s) 735
BseLI CCNNNNNNNGG 2 cut(s) 46, 79
BseMII CTCAG 4 cut(s) 118, 233, 661, 762
BseNI ACTGG 2 cut(s) 247, 847
BseRI GAGGAG 2 cut(s) 71, 221
BseXI GCAGC 1 cut(s) 542
Bsh1236I CGCG 1 cut(s) 684
BshFI GGCC 3 cut(s) 19, 72, 291
BsiHKAI GWGCWC 2 cut(s) 213, 655
BsiSI CCGG 5 cut(s) 20, 73, 656, 881, 906
BslFI GGGAC 1 cut(s) 925
BslI CCNNNNNNNGG 2 cut(s) 46, 79
BsmFI GGGAC 1 cut(s) 925
BsnI GGCC 3 cut(s) 19, 72, 291
Bsp119I TTCGAA 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 213, 655
Bsp13I TCCGGA 1 cut(s) 655
Bsp143I GATC 9 cut(s) 119, 144, 388, 495, 547, 705, 795, 826, 946
Bsp68I TCGCGA 1 cut(s) 684
BspACI CCGC 2 cut(s) 125, 909
BspANI GGCC 3 cut(s) 19, 72, 291
BspCNI CTCAG 4 cut(s) 117, 232, 660, 761
BspEI TCCGGA 1 cut(s) 655
BspFNI CGCG 1 cut(s) 684
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 885
BspPI GGATC 3 cut(s) 396, 490, 700
BspT104I TTCGAA 1 cut(s) 350
BsrI ACTGG 2 cut(s) 247, 847
BssECI CCNNGG 1 cut(s) 515
BssMI GATC 9 cut(s) 119, 144, 388, 495, 547, 705, 795, 826, 946
BssNI GRCGYC 2 cut(s) 114, 777
BssT1I CCWWGG 1 cut(s) 515
Bst4CI ACNGT 1 cut(s) 855
Bst6I CTCTTC 4 cut(s) 38, 351, 697, 783
BstACI GRCGYC 2 cut(s) 114, 777
BstBAI YACGTR 1 cut(s) 832
BstBI TTCGAA 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 6 cut(s) 104, 201, 219, 647, 667, 748
BstF5I GGATG 4 cut(s) 202, 316, 511, 736
BstFNI CGCG 1 cut(s) 684
BstHHI GCGC 1 cut(s) 638
BstKTI GATC 9 cut(s) 122, 147, 391, 498, 550, 708, 798, 829, 949
BstMBI GATC 9 cut(s) 119, 144, 388, 495, 547, 705, 795, 826, 946
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 636
BstPAI GACNNNNGTC 1 cut(s) 462
BstSCI CCNGG 2 cut(s) 72, 880
BstUI CGCG 1 cut(s) 684
BstV1I GCAGC 1 cut(s) 542
BstV2I GAAGAC 1 cut(s) 693
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BsuRI GGCC 3 cut(s) 19, 72, 291
BtsCI GGATG 4 cut(s) 202, 316, 511, 736
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 14
BtuMI TCGCGA 1 cut(s) 684
Cac8I GCNNGC 1 cut(s) 289
CciI TCATGA 1 cut(s) 319
CfoI GCGC 1 cut(s) 638
Cfr13I GGNCC 3 cut(s) 432, 609, 884
CseI GACGC 1 cut(s) 766
Csp6I GTAC 2 cut(s) 372, 481
CviAII CATG 8 cut(s) 227, 320, 429, 467, 471, 633, 874, 888
CviQI GTAC 2 cut(s) 372, 481
DdeI CTNAG 6 cut(s) 104, 201, 219, 647, 667, 748
DpnI GATC 9 cut(s) 121, 146, 390, 497, 549, 707, 797, 828, 948
DpnII GATC 9 cut(s) 119, 144, 388, 495, 547, 705, 795, 826, 946
EaeI YGGCCR 1 cut(s) 17
Eam1104I CTCTTC 4 cut(s) 38, 351, 697, 783
EarI CTCTTC 4 cut(s) 38, 351, 697, 783
EciI GGCGGA 1 cut(s) 140
Ecl136II GAGCTC 2 cut(s) 211, 653
Eco130I CCWWGG 1 cut(s) 515
Eco24I GRGCYC 2 cut(s) 213, 655
Eco47I GGWCC 3 cut(s) 432, 609, 884
Eco53kI GAGCTC 2 cut(s) 211, 653
Eco57I CTGAAG 1 cut(s) 511
Eco72I CACGTG 1 cut(s) 832
EcoICRI GAGCTC 2 cut(s) 211, 653
EcoT14I CCWWGG 1 cut(s) 515
EcoT22I ATGCAT 1 cut(s) 472
EcoT38I GRGCYC 2 cut(s) 213, 655
ErhI CCWWGG 1 cut(s) 515
FaeI CATG 8 cut(s) 230, 323, 432, 470, 474, 636, 877, 891
FaqI GGGAC 1 cut(s) 925
FatI CATG 8 cut(s) 226, 319, 428, 466, 470, 632, 873, 887
FauI CCCGC 1 cut(s) 902
FauNDI CATATG 1 cut(s) 1009
FbaI TGATCA 3 cut(s) 547, 795, 946
Fnu4HI GCNGC 1 cut(s) 556
FokI GGATG 4 cut(s) 209, 323, 498, 723
FriOI GRGCYC 2 cut(s) 213, 655
Fsp4HI GCNGC 1 cut(s) 556
FspBI CTAG 1 cut(s) 966
FspI TGCGCA 1 cut(s) 637
GlaI GCGC 1 cut(s) 637
GluI GCNGC 1 cut(s) 556
HaeIII GGCC 3 cut(s) 19, 72, 291
HapII CCGG 5 cut(s) 20, 73, 656, 881, 906
HgaI GACGC 1 cut(s) 766
HhaI GCGC 1 cut(s) 638
Hin1I GRCGYC 2 cut(s) 114, 777
Hin1II CATG 8 cut(s) 230, 323, 432, 470, 474, 636, 877, 891
Hin6I GCGC 1 cut(s) 636
HinP1I GCGC 1 cut(s) 636
HinfI GANTC 4 cut(s) 347, 689, 711, 899
HpaII CCGG 5 cut(s) 20, 73, 656, 881, 906
HphI GGTGA 3 cut(s) 61, 151, 843
Hpy166II GTNNAC 2 cut(s) 12, 457
Hpy188I TCNGA 7 cut(s) 107, 119, 343, 530, 609, 650, 710
Hpy188III TCNNGA 6 cut(s) 178, 320, 446, 656, 683, 950
Hpy8I GTNNAC 2 cut(s) 12, 457
Hpy99I CGWCG 1 cut(s) 859
HpyAV CCTTC 2 cut(s) 179, 763
HpyCH4III ACNGT 1 cut(s) 855
HpyCH4IV ACGT 4 cut(s) 114, 380, 573, 831
HpyCH4V TGCA 4 cut(s) 366, 470, 534, 558
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 6 cut(s) 104, 201, 219, 647, 667, 748
HpySE526I ACGT 4 cut(s) 114, 380, 573, 831
Hsp92I GRCGYC 2 cut(s) 114, 777
Hsp92II CATG 8 cut(s) 230, 323, 432, 470, 474, 636, 877, 891
HspAI GCGC 1 cut(s) 636
Kpn2I TCCGGA 1 cut(s) 655
Ksp22I TGATCA 3 cut(s) 547, 795, 946
Kzo9I GATC 9 cut(s) 119, 144, 388, 495, 547, 705, 795, 826, 946
LmnI GCTCC 4 cut(s) 4, 58, 208, 658
Lsp1109I GCAGC 1 cut(s) 542
LweI GCATC 3 cut(s) 187, 316, 521
MaeI CTAG 1 cut(s) 966
MaeII ACGT 4 cut(s) 114, 380, 573, 831
MaeIII GTNAC 6 cut(s) 110, 136, 250, 818, 832, 849
MalI GATC 9 cut(s) 121, 146, 390, 497, 549, 707, 797, 828, 948
MboI GATC 9 cut(s) 119, 144, 388, 495, 547, 705, 795, 826, 946
MboII GAAGA 7 cut(s) 55, 154, 368, 684, 698, 797, 800
MflI RGATCY 1 cut(s) 144
MhlI GDGCHC 2 cut(s) 213, 655
MluCI AATT 1 cut(s) 813
MlyI GAGTC 2 cut(s) 683, 908
MmeI TCCRAC 2 cut(s) 60, 321
MnlI CCTC 7 cut(s) 39, 49, 121, 199, 337, 766, 871
Mph1103I ATGCAT 1 cut(s) 472
MroI TCCGGA 1 cut(s) 655
MroXI GAANNNNTTC 2 cut(s) 524, 923
MseI TTAA 1 cut(s) 585
MslI CAYNNNNRTG 3 cut(s) 324, 427, 954
MspI CCGG 5 cut(s) 20, 73, 656, 881, 906
MspR9I CCNGG 2 cut(s) 74, 882
MvnI CGCG 1 cut(s) 684
MwoI GCNNNNNNNGC 1 cut(s) 254
NciI CCSGG 2 cut(s) 74, 882
NdeI CATATG 1 cut(s) 1009
NdeII GATC 9 cut(s) 119, 144, 388, 495, 547, 705, 795, 826, 946
NlaIII CATG 8 cut(s) 230, 323, 432, 470, 474, 636, 877, 891
NlaIV GGNNCC 1 cut(s) 885
NmuCI GTSAC 5 cut(s) 110, 136, 818, 832, 849
NruI TCGCGA 1 cut(s) 684
NsbI TGCGCA 1 cut(s) 637
NsiI ATGCAT 1 cut(s) 472
NspI RCATGY 1 cut(s) 636
NspV TTCGAA 1 cut(s) 350
PagI TCATGA 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 347
PdmI GAANNNNTTC 2 cut(s) 524, 923
PfeI GAWTC 2 cut(s) 347, 711
PkrI GCNGC 1 cut(s) 557
PleI GAGTC 2 cut(s) 683, 907
PmaCI CACGTG 1 cut(s) 832
PmlI CACGTG 1 cut(s) 832
PpsI GAGTC 2 cut(s) 683, 907
Ppu21I YACGTR 1 cut(s) 832
PshAI GACNNNNGTC 1 cut(s) 462
Psp124BI GAGCTC 2 cut(s) 213, 655
Psp1406I AACGTT 1 cut(s) 380
PspCI CACGTG 1 cut(s) 832
PspN4I GGNNCC 1 cut(s) 885
PspPI GGNCC 3 cut(s) 432, 609, 884
PsuI RGATCY 1 cut(s) 144
RruI TCGCGA 1 cut(s) 684
RsaI GTAC 2 cut(s) 373, 482
RsaNI GTAC 2 cut(s) 372, 481
RseI CAYNNNNRTG 3 cut(s) 324, 427, 954
SacI GAGCTC 2 cut(s) 213, 655
SaqAI TTAA 1 cut(s) 585
SatI GCNGC 1 cut(s) 556
Sau3AI GATC 9 cut(s) 119, 144, 388, 495, 547, 705, 795, 826, 946
Sau96I GGNCC 3 cut(s) 432, 609, 884
SchI GAGTC 2 cut(s) 683, 908
ScrFI CCNGG 2 cut(s) 74, 882
SduI GDGCHC 2 cut(s) 213, 655
SfaNI GCATC 3 cut(s) 187, 316, 521
SfuI TTCGAA 1 cut(s) 350
SinI GGWCC 3 cut(s) 432, 609, 884
SmiMI CAYNNNNRTG 3 cut(s) 324, 427, 954
SmlI CTYRAG 1 cut(s) 896
SmoI CTYRAG 1 cut(s) 896
Sse9I AATT 1 cut(s) 813
SsiI CCGC 2 cut(s) 125, 909
SspMI CTAG 1 cut(s) 966
SstI GAGCTC 2 cut(s) 213, 655
StyD4I CCNGG 2 cut(s) 72, 880
StyI CCWWGG 1 cut(s) 515
TaaI ACNGT 1 cut(s) 855
TaiI ACGT 4 cut(s) 117, 383, 576, 834
TaqI TCGA 3 cut(s) 350, 761, 932
TasI AATT 1 cut(s) 813
TfiI GAWTC 2 cut(s) 347, 711
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TscAI CASTG 1 cut(s) 14
TseFI GTSAC 5 cut(s) 110, 136, 818, 832, 849
TseI GCWGC 1 cut(s) 555
Tsp45I GTSAC 5 cut(s) 110, 136, 818, 832, 849
TspDTI ATGAA 9 cut(s) 215, 288, 308, 350, 369, 417, 606, 747, 1008
TspGWI ACGGA 1 cut(s) 498
TspRI CASTG 1 cut(s) 14
VpaK11BI GGWCC 3 cut(s) 432, 609, 884
XceI RCATGY 1 cut(s) 636
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
XmnI GAANNNNTTC 2 cut(s) 524, 923
XspI CTAG 1 cut(s) 966
ZraI GACGTC 1 cut(s) 115
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.