Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001288

Physical Location & Seq

Genomic Coordinates Forward (+)

5754777 .. 5755949

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAAGGTTATCACAATGGAGTGCAGTGCTCTAGCTGAAAGTGTGTCTTTATGGAATCGGCAAAGGGTGGAGGAAGAACTGGTTCTAGGGCTAGAACTCGCGAGCCAACTTAGGAGGGTTCTTTCTAATGGGGATTGGAGATCGGCCGAAGGCCTCGTTACAAAGATCTTGTGCTCCTTCAAGAACAGCCTTTACTTCTTGAATGGAAGTAATCATGGGTCTGAGGAGGAGCTGAGTTCTCATATTCGAGCAAATGATATTGCTTTAGCTAGCGCTCTTCCTCCTCAAATTCTAGAATCGTCATCTTCGGATGCTCATAAGGCTGTTAAGAGAGGTGCTGCGTTCATGGATCACAGAGGTTCTTTCAAGAGGAGAAAGAAGATGACTTCATCACAAGCATGGTCAAGAGACGGTCCAGATTTCAATGACGATGGTCATGCATGGAGAAAGAGCTACTTTAGGTGCAGTCATAAGCACGATCAAGGCTGCAGCGCAACCAAGCAGGTGCAAAAACTCGACGATGATTCGCAGCTGTTCCGGACTACATACTATGGAAATCACACATGCACTAACAACAGCTTCCTCAAGGCTCCTGAATTTGTCTTGGATGCTACAAGCACTACTCCAACAGAAGTGTCTGATTCCAAGTTTACGATCATATATGATAACTCAAGCAGCAGCGTCACAAACAATCAAGAACAGCCTTGGTTCTCATCCACCCAAAACGAGCTCATCATCAAGTCTAGTCATACTACTGGCAACCAGTCATCATTATTATCATCTAGCGGTTATCTTGTGTCACCTGATACGGTGGTGTTCGAGCCCTCTGAACCCATCAGTGGTGGCATACCAGAGATTGAGCTTGATCTTGAGGATATGTTACTTGGGGCAGAGATAGGACACTTATTCGAAGAACTTTTGCCCTATGAACTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

313

Amino Acids

34.8

Weight (kDa)

5.23

Isoelectric Point (pI)

52.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	146 - 189	7.4e-11	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22570
fragaria_vesca	FvH4_6g09650 FvH4_6g09710 FvH4_6g09710 FvH4_6g09730 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09750 FvH4_6g09760
malus_domestica	MD04G1175500.v1.1 MD04G1175600.v1.1 MD12G1189200.v1.1 MD12G1189400.v1.1 MD12G1189600.v1.1 MD12G1189700.v1.1 MD12G1189900.v1.1
prunus_persica	Prupe.6G294900_v2.0.a1 Prupe.6G295000_v2.0.a1 Prupe.6G295100_v2.0.a1
pyrus_communis	pycom04g15480 pycom04g15490 pycom12g17650 pycom12g17690 pycom12g17700 pycom12g17730
rosa_chinensis	RchiOBHm_Chr3g0460351 RchiOBHm_Chr3g0460361
rosa_laevigata	RLG00000025018 RLG00000025019 RLG00000025027 RLG00000025113
rosa_multiflora	Rmu_sc0000449.1_g000005 Rmu_sc0004267.1_g000019
rosa_roxburghii	Rroxscaffold_6G00419560 Rroxscaffold_6G00419590
rosa_rugosa	Rorug03G0033500 Rorug03G0033500 Rorug03G0041400 Rorug03G0041800 Rorug03G0042000
rosa_samantha	Rh3AG100000 Rh3AG100100 Rh3BG094800 Rh3BG103900 Rh3BG104000 Rh3CG105700 Rh3CG105800 Rh3DG105300 Rh3DG105400
rosa_wichuraiana	Rw3G008480 Rw3G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	493
Acc36I	ACCTGC	1 cut(s)	493
AccII	CGCG	1 cut(s)	101
AccIII	TCCGGA	1 cut(s)	537
AciI	CCGC	1 cut(s)	786
AclWI	GGATC	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	2 cut(s)	288, 596
AfeI	AGCGCT	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	839
AgsI	TTSAA	4 cut(s)	181, 202, 367, 424
AluBI	AGCT	8 cut(s)	35, 232, 269, 453, 532, 579, 730, 862
AluI	AGCT	8 cut(s)	35, 232, 269, 453, 532, 579, 730, 862
Alw21I	GWGCWC	3 cut(s)	31, 176, 732
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	357
Aor13HI	TCCGGA	1 cut(s)	537
Aor51HI	AGCGCT	1 cut(s)	274
AoxI	GGCC	2 cut(s)	144, 151
ApeKI	GCWGC	6 cut(s)	338, 486, 489, 529, 675, 678
ApoI	RAATTY	2 cut(s)	288, 596
Asp700I	GAANNNNTTC	1 cut(s)	81
AspLEI	GCGC	2 cut(s)	275, 494
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	792
AsuII	TTCGAA	1 cut(s)	909
AsuNHI	GCTAGC	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	413
BaeI	ACNNNNGTAYC	2 cut(s)	798, 831
BanII	GRGCYC	2 cut(s)	732, 825
Bbv12I	GWGCWC	3 cut(s)	31, 176, 732
BbvI	GCAGC	6 cut(s)	325, 473, 501, 541, 687, 690
BccI	CCATC	2 cut(s)	425, 842
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	7 cut(s)	32, 86, 92, 270, 293, 744, 783
BfmI	CTRYAG	1 cut(s)	487
BfoI	RGCGCY	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	493
BglII	AGATCT	1 cut(s)	165
BisI	GCNGC	6 cut(s)	339, 487, 490, 530, 676, 679
BlsI	GCNGC	6 cut(s)	340, 488, 491, 531, 677, 680
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	591
BmsI	GCATC	2 cut(s)	301, 598
BmtI	GCTAGC	1 cut(s)	273
BoxI	GACNNNNGTC	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	909
BpuEI	CTTGAG	3 cut(s)	569, 655, 890
BsaJI	CCNNGG	1 cut(s)	704
BsaWI	WCCGGW	1 cut(s)	537
Bsc4I	CCNNNNNNNGG	1 cut(s)	839
Bse1I	ACTGG	3 cut(s)	84, 760, 763
BseAI	TCCGGA	1 cut(s)	537
BseDI	CCNNGG	1 cut(s)	704
BseGI	GGATG	3 cut(s)	316, 613, 713
BseLI	CCNNNNNNNGG	1 cut(s)	839
BseMII	CTCAG	2 cut(s)	213, 224
BseNI	ACTGG	3 cut(s)	84, 760, 763
BseRI	GAGGAG	4 cut(s)	239, 242, 273, 385
BseX3I	CGGCCG	1 cut(s)	144
BseXI	GCAGC	6 cut(s)	325, 473, 501, 541, 687, 690
BsgI	GTGCAG	2 cut(s)	43, 484
Bsh1236I	CGCG	1 cut(s)	101
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	146, 153
BsiEI	CGRYCG	1 cut(s)	147
BsiHKAI	GWGCWC	3 cut(s)	31, 176, 732
BsiSI	CCGG	1 cut(s)	538
BslI	CCNNNNNNNGG	1 cut(s)	839
BsmAI	GTCTC	1 cut(s)	402
BsmBI	CGTCTC	1 cut(s)	402
BsnI	GGCC	2 cut(s)	146, 153
Bsp119I	TTCGAA	1 cut(s)	909
Bsp1286I	GDGCHC	4 cut(s)	31, 176, 732, 825
Bsp13I	TCCGGA	1 cut(s)	537
Bsp143I	GATC	6 cut(s)	140, 165, 349, 478, 654, 865
Bsp68I	TCGCGA	1 cut(s)	101
BspACI	CCGC	1 cut(s)	786
BspANI	GGCC	2 cut(s)	146, 153
BspCNI	CTCAG	2 cut(s)	214, 225
BspEI	TCCGGA	1 cut(s)	537
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	1 cut(s)	591
BspMAI	CTGCAG	1 cut(s)	491
BspMI	ACCTGC	1 cut(s)	493
BspOI	GCTAGC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	357
BspQI	GCTCTTC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	909
BsrI	ACTGG	3 cut(s)	84, 760, 763
BssECI	CCNNGG	1 cut(s)	704
BssMI	GATC	6 cut(s)	140, 165, 349, 478, 654, 865
BssT1I	CCWWGG	1 cut(s)	704
Bst4CI	ACNGT	2 cut(s)	413, 811
Bst6I	CTCTTC	1 cut(s)	282
BstBI	TTCGAA	1 cut(s)	909
BstC8I	GCNNGC	2 cut(s)	103, 271
BstDEI	CTNAG	3 cut(s)	110, 222, 233
BstF5I	GGATG	3 cut(s)	316, 613, 713
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	2 cut(s)	275, 494
BstKTI	GATC	6 cut(s)	143, 168, 352, 481, 657, 868
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	6 cut(s)	140, 165, 349, 478, 654, 865
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	567
BstPAI	GACNNNNGTC	1 cut(s)	432
BstSFI	CTRYAG	1 cut(s)	487
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	6 cut(s)	325, 473, 501, 541, 687, 690
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BstZI	CGGCCG	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	146, 153
BtsCI	GGATG	3 cut(s)	316, 613, 713
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	31, 844
BtuMI	TCGCGA	1 cut(s)	101
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	2 cut(s)	103, 271
CfoI	GCGC	2 cut(s)	275, 494
Cfr13I	GGNCC	1 cut(s)	413
CseI	GACGC	1 cut(s)	670
CviAII	CATG	6 cut(s)	215, 346, 399, 437, 441, 564
DdeI	CTNAG	3 cut(s)	110, 222, 233
DpnI	GATC	6 cut(s)	142, 167, 351, 480, 656, 867
DpnII	GATC	6 cut(s)	140, 165, 349, 478, 654, 865
EaeI	YGGCCR	1 cut(s)	144
EagI	CGGCCG	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	730
EclXI	CGGCCG	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	704
Eco147I	AGGCCT	1 cut(s)	153
Eco24I	GRGCYC	2 cut(s)	732, 825
Eco47I	GGWCC	1 cut(s)	413
Eco47III	AGCGCT	1 cut(s)	274
Eco52I	CGGCCG	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	730
EcoICRI	GAGCTC	1 cut(s)	730
EcoT14I	CCWWGG	1 cut(s)	704
EcoT22I	ATGCAT	1 cut(s)	442
EcoT38I	GRGCYC	2 cut(s)	732, 825
ErhI	CCWWGG	1 cut(s)	704
Esp3I	CGTCTC	1 cut(s)	402
FaeI	CATG	6 cut(s)	218, 349, 402, 440, 444, 567
FalI	AAGNNNNNCTT	4 cut(s)	31, 63, 440, 472
FatI	CATG	6 cut(s)	214, 345, 398, 436, 440, 563
Fnu4HI	GCNGC	6 cut(s)	339, 487, 490, 530, 676, 679
FokI	GGATG	3 cut(s)	323, 620, 700
FriOI	GRGCYC	2 cut(s)	732, 825
Fsp4HI	GCNGC	6 cut(s)	339, 487, 490, 530, 676, 679
FspBI	CTAG	7 cut(s)	32, 86, 92, 270, 293, 744, 783
GlaI	GCGC	2 cut(s)	274, 493
GluI	GCNGC	6 cut(s)	339, 487, 490, 530, 676, 679
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	146, 153
HapII	CCGG	1 cut(s)	538
HgaI	GACGC	1 cut(s)	670
HhaI	GCGC	2 cut(s)	275, 494
Hin1II	CATG	6 cut(s)	218, 349, 402, 440, 444, 567
Hin6I	GCGC	2 cut(s)	273, 492
HinP1I	GCGC	2 cut(s)	273, 492
HinfI	GANTC	4 cut(s)	55, 296, 524, 641
HpaII	CCGG	1 cut(s)	538
HphI	GGTGA	1 cut(s)	792
Hpy166II	GTNNAC	1 cut(s)	651
Hpy188I	TCNGA	4 cut(s)	223, 310, 640, 829
Hpy8I	GTNNAC	1 cut(s)	651
Hpy99I	CGWCG	1 cut(s)	521
HpyAV	CCTTC	2 cut(s)	143, 187
HpyCH4III	ACNGT	2 cut(s)	413, 811
HpyCH4V	TGCA	6 cut(s)	24, 440, 465, 489, 508, 567
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	3 cut(s)	110, 222, 233
Hsp92II	CATG	6 cut(s)	218, 349, 402, 440, 444, 567
HspAI	GCGC	2 cut(s)	273, 492
Kpn2I	TCCGGA	1 cut(s)	537
Kzo9I	GATC	6 cut(s)	140, 165, 349, 478, 654, 865
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	3 cut(s)	179, 229, 595
LpnPI	CCDG	9 cut(s)	65, 429, 488, 551, 606, 741, 776, 816, 864
Lsp1109I	GCAGC	6 cut(s)	325, 473, 501, 541, 687, 690
LweI	GCATC	2 cut(s)	301, 598
MaeI	CTAG	7 cut(s)	32, 86, 92, 270, 293, 744, 783
MaeIII	GTNAC	4 cut(s)	157, 682, 798, 879
MalI	GATC	6 cut(s)	142, 167, 351, 480, 656, 867
MboI	GATC	6 cut(s)	140, 165, 349, 478, 654, 865
MboII	GAAGA	5 cut(s)	86, 269, 297, 391, 923
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	4 cut(s)	31, 176, 732, 825
MluCI	AATT	2 cut(s)	288, 596
MmeI	TCCRAC	1 cut(s)	650
Mph1103I	ATGCAT	1 cut(s)	442
MroI	TCCGGA	1 cut(s)	537
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	397
MspA1I	CMGCKG	1 cut(s)	532
MspI	CCGG	1 cut(s)	538
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeII	GATC	6 cut(s)	140, 165, 349, 478, 654, 865
NheI	GCTAGC	1 cut(s)	269
NlaIII	CATG	6 cut(s)	218, 349, 402, 440, 444, 567
NlaIV	GGNNCC	1 cut(s)	591
NmuCI	GTSAC	2 cut(s)	682, 798
NruI	TCGCGA	1 cut(s)	101
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	1 cut(s)	567
NspV	TTCGAA	1 cut(s)	909
PaqCI	CACCTGC	1 cut(s)	493
PceI	AGGCCT	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	4 cut(s)	55, 296, 524, 641
PkrI	GCNGC	6 cut(s)	340, 488, 491, 531, 677, 680
PshAI	GACNNNNGTC	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	732
PspN4I	GGNNCC	1 cut(s)	591
PspPI	GGNCC	1 cut(s)	413
PsrI	GAACNNNNNNTAC	2 cut(s)	176, 208
PstI	CTGCAG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	165
PvuII	CAGCTG	1 cut(s)	532
RruI	TCGCGA	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	397
SacI	GAGCTC	1 cut(s)	732
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	6 cut(s)	339, 487, 490, 530, 676, 679
Sau3AI	GATC	6 cut(s)	140, 165, 349, 478, 654, 865
Sau96I	GGNCC	1 cut(s)	413
SduI	GDGCHC	4 cut(s)	31, 176, 732, 825
SfaNI	GCATC	2 cut(s)	301, 598
SfcI	CTRYAG	1 cut(s)	487
SfuI	TTCGAA	1 cut(s)	909
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	397
SmlI	CTYRAG	3 cut(s)	584, 670, 869
SmoI	CTYRAG	3 cut(s)	584, 670, 869
Sse9I	AATT	2 cut(s)	288, 596
SseBI	AGGCCT	1 cut(s)	153
SsiI	CCGC	1 cut(s)	786
SspMI	CTAG	7 cut(s)	32, 86, 92, 270, 293, 744, 783
SstI	GAGCTC	1 cut(s)	732
StuI	AGGCCT	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	704
TaaI	ACNGT	2 cut(s)	413, 811
TaqI	TCGA	4 cut(s)	247, 516, 819, 909
TasI	AATT	2 cut(s)	288, 596
TfiI	GAWTC	4 cut(s)	55, 296, 524, 641
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	2 cut(s)	31, 844
TseFI	GTSAC	2 cut(s)	682, 798
TseI	GCWGC	6 cut(s)	338, 486, 489, 529, 675, 678
Tsp45I	GTSAC	2 cut(s)	682, 798
TspDTI	ATGAA	3 cut(s)	17, 334, 378
TspRI	CASTG	2 cut(s)	31, 844
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	2 cut(s)	288, 596
XbaI	TCTAGA	1 cut(s)	292
XceI	RCATGY	1 cut(s)	567
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	7 cut(s)	32, 86, 92, 270, 293, 744, 783
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.