Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001288

Physical Location & Seq

Genomic Coordinates Reverse (-)

20118076 .. 20120275

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g17690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAGGAGTTCATACAAGGGCGCGAACTGGCAAGTCAACTTAGTAAGGCTTTTGATAATAGGTCACTTGTTAATGGTGAAGATTGGGGATCGGCTGAAGGTATTGTTAATAAGATTTTGGGGTCATTCGTTGGTACCCTCTTGATTATAAATGGGAAGGAGTCTGTTCAGGAGTTTGTTTCTGATCAGATTCAAGGAAATAGTAGTGATGTTAGTGGCGGTGGGAGTGGTGGTGGTAGTGGTGTTGGTGGCGGTGGTAGTGGTGTTGGTAGTGGTGTTGGTGACGGTGGTAGTGATGGTGGTGGTGGTGCTTATTCATCATCTGCGGATGCTAATCATGATCATGCAGCTGCTATGAAGTCTGAAGATTGTACTGAGGAGGAGACCAGTTGTAAGAGCACGTTAACCTTCAAGGATGGTAGAGGTTCTTACAAGAGAAGAAAGACTTCACATTCTTGGACTAGAGACACTCCTGCGTTGATTGCCGACGGTCATGCATGGAGAAAGTATGGACAAAAAATTATCCACAATGCCAAGCATCCAAGGAACTACTTTAGATGCACATACAAATACGATCAAGCTTGCAAAGCAACCAAGCACGTGCAACAAGTTCAATGGAGATCATCCACCAGTGTTTCGAACCGTATATTATGGCACCCACAAGTGCAGATACTACCTCAAAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

230

Amino Acids

24.52

Weight (kDa)

7.73

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22570
fragaria_vesca	FvH4_6g09650 FvH4_6g09710 FvH4_6g09710 FvH4_6g09730 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09750 FvH4_6g09760
malus_domestica	MD04G1175500.v1.1 MD04G1175600.v1.1 MD12G1189200.v1.1 MD12G1189400.v1.1 MD12G1189600.v1.1 MD12G1189700.v1.1 MD12G1189900.v1.1
prunus_persica	Prupe.6G294900_v2.0.a1 Prupe.6G295000_v2.0.a1 Prupe.6G295100_v2.0.a1
pyrus_communis	pycom04g15480 pycom04g15490 pycom12g17650 pycom12g17690 pycom12g17700 pycom12g17730
rosa_chinensis	RchiOBHm_Chr3g0460351 RchiOBHm_Chr3g0460361
rosa_laevigata	RLG00000025018 RLG00000025019 RLG00000025027 RLG00000025113
rosa_multiflora	Rmu_sc0000449.1_g000005 Rmu_sc0004267.1_g000019
rosa_roxburghii	Rroxscaffold_6G00419560 Rroxscaffold_6G00419590
rosa_rugosa	Rorug03G0033500 Rorug03G0033500 Rorug03G0041400 Rorug03G0041800 Rorug03G0042000
rosa_samantha	Rh3AG100000 Rh3AG100100 Rh3BG094800 Rh3BG103900 Rh3BG104000 Rh3CG105700 Rh3CG105800 Rh3DG105300 Rh3DG105400
rosa_wichuraiana	Rw3G008480 Rw3G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	2 cut(s)	134, 654
AccII	CGCG	1 cut(s)	24
AciI	CCGC	3 cut(s)	219, 252, 326
AclWI	GGATC	1 cut(s)	97
AcuI	CTGAAG	2 cut(s)	117, 384
AcvI	CACGTG	1 cut(s)	601
AfaI	GTAC	2 cut(s)	136, 373
AgsI	TTSAA	3 cut(s)	194, 412, 614
AluBI	AGCT	2 cut(s)	350, 581
AluI	AGCT	2 cut(s)	350, 581
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	2 cut(s)	377, 459
AlwI	GGATC	1 cut(s)	97
ApeKI	GCWGC	2 cut(s)	347, 350
Asp700I	GAANNNNTTC	1 cut(s)	445
Asp718I	GGTACC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	89, 293
AsuII	TTCGAA	1 cut(s)	638
BanI	GGYRCC	2 cut(s)	134, 654
BbrPI	CACGTG	1 cut(s)	601
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	337, 359
BccI	CCATC	2 cut(s)	290, 410
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BclI	TGATCA	2 cut(s)	184, 340
BcoDI	GTCTC	2 cut(s)	377, 459
BfaI	CTAG	1 cut(s)	462
BisI	GCNGC	2 cut(s)	348, 351
BlsI	GCNGC	2 cut(s)	349, 352
BmiI	GGNNCC	2 cut(s)	136, 656
BmsI	GCATC	3 cut(s)	319, 547, 548
Bpu14I	TTCGAA	1 cut(s)	638
BsaAI	YACGTR	1 cut(s)	601
BsaBI	GATNNNNATC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	542
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bse1I	ACTGG	3 cut(s)	33, 387, 630
Bse8I	GATNNNNATC	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	542
BseGI	GGATG	4 cut(s)	334, 421, 538, 623
BseJI	GATNNNNATC	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	3 cut(s)	33, 387, 630
BseRI	GAGGAG	3 cut(s)	20, 392, 395
BseXI	GCAGC	2 cut(s)	337, 359
BsgI	GTGCAG	1 cut(s)	686
Bsh1236I	CGCG	1 cut(s)	24
BshNI	GGYRCC	2 cut(s)	134, 654
BsiHKAI	GWGCWC	1 cut(s)	401
BsmAI	GTCTC	2 cut(s)	377, 459
Bso31I	GGTCTC	1 cut(s)	377
Bsp119I	TTCGAA	1 cut(s)	638
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	5 cut(s)	89, 184, 340, 574, 620
BspACI	CCGC	3 cut(s)	219, 252, 326
BspCNI	CTCAG	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	136, 656
BspPI	GGATC	1 cut(s)	97
BspT104I	TTCGAA	1 cut(s)	638
BspT107I	GGYRCC	2 cut(s)	134, 654
BspTNI	GGTCTC	1 cut(s)	377
BsrI	ACTGG	3 cut(s)	33, 387, 630
BssECI	CCNNGG	1 cut(s)	542
BssMI	GATC	5 cut(s)	89, 184, 340, 574, 620
BssT1I	CCWWGG	1 cut(s)	542
Bst4CI	ACNGT	3 cut(s)	287, 491, 644
BstBAI	YACGTR	1 cut(s)	601
BstBI	TTCGAA	1 cut(s)	638
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	2 cut(s)	41, 375
BstF5I	GGATG	4 cut(s)	334, 421, 538, 623
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	5 cut(s)	92, 187, 343, 577, 623
BstMAI	GTCTC	2 cut(s)	377, 459
BstMBI	GATC	5 cut(s)	89, 184, 340, 574, 620
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 587
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	337, 359
BtsCI	GGATG	4 cut(s)	334, 421, 538, 623
BtsIMutI	CAGTG	1 cut(s)	637
Cac8I	GCNNGC	1 cut(s)	583
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	135, 372
CviAII	CATG	4 cut(s)	338, 344, 494, 498
CviJI	RGCY	4 cut(s)	50, 95, 350, 581
CviKI_1	RGCY	4 cut(s)	50, 95, 350, 581
CviQI	GTAC	2 cut(s)	135, 372
DdeI	CTNAG	2 cut(s)	41, 375
DpnI	GATC	5 cut(s)	91, 186, 342, 576, 622
DpnII	GATC	5 cut(s)	89, 184, 340, 574, 620
Eco130I	CCWWGG	1 cut(s)	542
Eco31I	GGTCTC	1 cut(s)	377
Eco57I	CTGAAG	2 cut(s)	117, 384
Eco72I	CACGTG	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	542
EcoT22I	ATGCAT	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	4 cut(s)	341, 347, 497, 501
FalI	AAGNNNNNCTT	2 cut(s)	430, 462
FatI	CATG	4 cut(s)	337, 343, 493, 497
FbaI	TGATCA	2 cut(s)	184, 340
Fnu4HI	GCNGC	2 cut(s)	348, 351
FokI	GGATG	4 cut(s)	341, 428, 525, 610
Fsp4HI	GCNGC	2 cut(s)	348, 351
FspBI	CTAG	1 cut(s)	462
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	2 cut(s)	348, 351
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	4 cut(s)	341, 347, 497, 501
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HincII	GTYRAC	2 cut(s)	38, 405
HindII	GTYRAC	2 cut(s)	38, 405
HindIII	AAGCTT	1 cut(s)	579
HinfI	GANTC	2 cut(s)	161, 190
HpaI	GTTAAC	1 cut(s)	405
HphI	GGTGA	2 cut(s)	89, 293
Hpy166II	GTNNAC	2 cut(s)	38, 405
Hpy188I	TCNGA	4 cut(s)	184, 189, 364, 689
Hpy188III	TCNNGA	3 cut(s)	142, 170, 338
Hpy8I	GTNNAC	2 cut(s)	38, 405
Hpy99I	CGWCG	1 cut(s)	491
HpyAV	CCTTC	3 cut(s)	92, 151, 418
HpyCH4III	ACNGT	3 cut(s)	287, 491, 644
HpyCH4IV	ACGT	2 cut(s)	401, 600
HpyCH4V	TGCA	6 cut(s)	347, 497, 561, 585, 604, 667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 587
HpyF3I	CTNAG	2 cut(s)	41, 375
HpySE526I	ACGT	2 cut(s)	401, 600
Hsp92II	CATG	4 cut(s)	341, 347, 497, 501
HspAI	GCGC	1 cut(s)	22
KpnI	GGTACC	1 cut(s)	138
Ksp22I	TGATCA	2 cut(s)	184, 340
KspAI	GTTAAC	1 cut(s)	405
Kzo9I	GATC	5 cut(s)	89, 184, 340, 574, 620
LpnPI	CCDG	5 cut(s)	14, 155, 400, 486, 643
Lsp1109I	GCAGC	2 cut(s)	337, 359
LweI	GCATC	3 cut(s)	319, 547, 548
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	2 cut(s)	401, 600
MaeIII	GTNAC	2 cut(s)	63, 281
MalI	GATC	5 cut(s)	91, 186, 342, 576, 622
MboI	GATC	5 cut(s)	89, 184, 340, 574, 620
MboII	GAAGA	3 cut(s)	92, 377, 450
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	1 cut(s)	519
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	5 cut(s)	149, 370, 373, 416, 687
Mph1103I	ATGCAT	1 cut(s)	499
MroXI	GAANNNNTTC	1 cut(s)	445
MseI	TTAA	3 cut(s)	72, 108, 404
MslI	CAYNNNNRTG	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	350
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	482, 587
NdeII	GATC	5 cut(s)	89, 184, 340, 574, 620
NlaIII	CATG	4 cut(s)	341, 347, 497, 501
NlaIV	GGNNCC	2 cut(s)	136, 656
NmuCI	GTSAC	2 cut(s)	63, 281
NsiI	ATGCAT	1 cut(s)	499
NspV	TTCGAA	1 cut(s)	638
PagI	TCATGA	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	349, 352
PleI	GAGTC	1 cut(s)	169
PmaCI	CACGTG	1 cut(s)	601
PmlI	CACGTG	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	169
Ppu21I	YACGTR	1 cut(s)	601
PsiI	TTATAA	1 cut(s)	149
PspCI	CACGTG	1 cut(s)	601
PspN4I	GGNNCC	2 cut(s)	136, 656
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	2 cut(s)	136, 373
RsaNI	GTAC	2 cut(s)	135, 372
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	3 cut(s)	72, 108, 404
SatI	GCNGC	2 cut(s)	348, 351
Sau3AI	GATC	5 cut(s)	89, 184, 340, 574, 620
SchI	GAGTC	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	401
SetI	ASST	9 cut(s)	65, 103, 352, 404, 410, 427, 583, 603, 679
SfaNI	GCATC	3 cut(s)	319, 547, 548
SfuI	TTCGAA	1 cut(s)	638
SmiMI	CAYNNNNRTG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	519
SsiI	CCGC	3 cut(s)	219, 252, 326
SspMI	CTAG	1 cut(s)	462
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	3 cut(s)	287, 491, 644
TaiI	ACGT	2 cut(s)	404, 603
TaqI	TCGA	1 cut(s)	638
TasI	AATT	1 cut(s)	519
TatI	WGTACW	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	3 cut(s)	72, 108, 404
Tru9I	TTAA	3 cut(s)	72, 108, 404
TscAI	CASTG	1 cut(s)	637
TseFI	GTSAC	2 cut(s)	63, 281
TseI	GCWGC	2 cut(s)	347, 350
Tsp45I	GTSAC	2 cut(s)	63, 281
TspDTI	ATGAA	2 cut(s)	306, 371
TspRI	CASTG	1 cut(s)	637
XmnI	GAANNNNTTC	1 cut(s)	445
XspI	CTAG	1 cut(s)	462
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.