Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001288

Physical Location & Seq

Genomic Coordinates Reverse (-)

20047325 .. 20050417

Gene Structure 3093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g17650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGAGTGGTCGTGGCCGGAGGGTCTGCTTTCAAATAGGGGGAGGGTGATGGAGGAGTTGATCCAAGGGCGTGAGCTGGCAAGTCAACTTAGTAGGGCTTTTGATAATAGGTCACTTGTCGTTAATGGTCATGATGGGAGATCGGCTGAAGGTATTGTTAACAAGATTTTGGGGTCATTTGCGAATACCCTTTTGTTTTTAAATGGGAAGGAGTCTGATCAAGAGTTTGTTTCCGATCAGATTCAAGGAAATAGTAGAGGTGTTGGTGGTGGTGGTAGTGGTGTTAGTGACGGTGGTAGTAGTGGTGGTGGTGGTGCATATTCGTCATCTTGGGGTGCTAATCATGGTCATGCAGCTGCTATTAAGCCTGAAGACTATACTGAGGAGGAGAACAGTTGTAGAAGCAGTTCAACCTTCAAGGATCGAAGAGGTTCTTACACGAGAAGGAAGACTTCACACTCTTGGACTAGAGACACTCCTGCTTTGATTGATGACGGCCATGCATGGAGAAAGTATGGACAAAAAAATATCCACAATGCCAAGCATCCAAGGAACTACTTTAGATGCACTCACAAACACGATCAAGTGTGCAAAGCAACCAAGCGCGTTCAACAAGTTCAACATCATCCACCAGTGTTCCGAACCACATATTATGGCACCCACACGTGCAGAGACTACCTCAAAACTTCTGAACAAGTCTTGGATTGCACAAGTCCTAGAGATTCTTCAAAGTTCATTAGTTTTGAAAACGCCAACTGGTTGACAAACAAACAAGAGCACCCATTTTTCGCATCCTTCGCTTCATCATCAGTTAAAGAAGAAGTGTTCGCTAAAGAAGATATTGCAACAATTGATCACTCAGTGACAAGCGACCACAACCATTCAGTACGGCATGATCATCTTGTGTCGCATGATCTGACGTTCGAGTCCTCTGGACCCATGGTTGGGTTTTCATCAAGCATCGACCAGTATGAAGATGACGACGTGTTTTGGAAGACTGTCGAGTCTTTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

339

Amino Acids

37.84

Weight (kDa)

6.34

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	164 - 223	3.3e-22	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22570
fragaria_vesca	FvH4_6g09650 FvH4_6g09710 FvH4_6g09710 FvH4_6g09730 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09750 FvH4_6g09760
malus_domestica	MD04G1175500.v1.1 MD04G1175600.v1.1 MD12G1189200.v1.1 MD12G1189400.v1.1 MD12G1189600.v1.1 MD12G1189700.v1.1 MD12G1189900.v1.1
prunus_persica	Prupe.6G294900_v2.0.a1 Prupe.6G295000_v2.0.a1 Prupe.6G295100_v2.0.a1
pyrus_communis	pycom04g15480 pycom04g15490 pycom12g17650 pycom12g17690 pycom12g17700 pycom12g17730
rosa_chinensis	RchiOBHm_Chr3g0460351 RchiOBHm_Chr3g0460361
rosa_laevigata	RLG00000025018 RLG00000025019 RLG00000025027 RLG00000025113
rosa_multiflora	Rmu_sc0000449.1_g000005 Rmu_sc0004267.1_g000019
rosa_roxburghii	Rroxscaffold_6G00419560 Rroxscaffold_6G00419590
rosa_rugosa	Rorug03G0033500 Rorug03G0033500 Rorug03G0041400 Rorug03G0041800 Rorug03G0042000
rosa_samantha	Rh3AG100000 Rh3AG100100 Rh3BG094800 Rh3BG103900 Rh3BG104000 Rh3CG105700 Rh3CG105800 Rh3DG105300 Rh3DG105400
rosa_wichuraiana	Rw3G008480 Rw3G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	925, 1003
AccB1I	GGYRCC	1 cut(s)	656
AccII	CGCG	1 cut(s)	606
AclWI	GGATC	2 cut(s)	55, 429
AcoI	YGGCCR	2 cut(s)	14, 496
AcuI	CTGAAG	2 cut(s)	168, 390
AcvI	CACGTG	1 cut(s)	666
AdeI	CACNNNGTG	1 cut(s)	862
AfaI	GTAC	1 cut(s)	888
AfiI	CCNNNNNNNGG	2 cut(s)	944, 945
AflIII	ACRYGT	2 cut(s)	663, 984
AgsI	TTSAA	8 cut(s)	33, 245, 411, 418, 611, 620, 729, 746
AjiI	CACGTC	1 cut(s)	985
AluBI	AGCT	2 cut(s)	76, 356
AluI	AGCT	2 cut(s)	76, 356
Alw21I	GWGCWC	1 cut(s)	780
Alw26I	GTCTC	2 cut(s)	465, 666
AlwI	GGATC	2 cut(s)	55, 429
AoxI	GGCC	2 cut(s)	14, 496
ApeKI	GCWGC	2 cut(s)	353, 356
Asp700I	GAANNNNTTC	2 cut(s)	406, 430
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	1 cut(s)	935
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	935
BanI	GGYRCC	1 cut(s)	656
BauI	CACGAG	1 cut(s)	439
BbrPI	CACGTG	1 cut(s)	666
BbsI	GAAGAC	3 cut(s)	378, 455, 1001
Bbv12I	GWGCWC	1 cut(s)	780
BbvI	GCAGC	2 cut(s)	343, 365
BccI	CCATC	2 cut(s)	43, 128
BceAI	ACGGC	2 cut(s)	511, 905
BclI	TGATCA	3 cut(s)	217, 853, 895
BcoDI	GTCTC	2 cut(s)	465, 666
BfaI	CTAG	2 cut(s)	468, 717
BisI	GCNGC	2 cut(s)	354, 357
BlsI	GCNGC	2 cut(s)	355, 358
Bme18I	GGWCC	1 cut(s)	935
BmgBI	CACGTC	1 cut(s)	985
BmgT120I	GGNCC	1 cut(s)	935
BmiI	GGNNCC	2 cut(s)	658, 937
BmsI	GCATC	4 cut(s)	553, 554, 800, 969
BpiI	GAAGAC	3 cut(s)	378, 455, 1001
BplI	GAGNNNNNCTC	2 cut(s)	663, 695
BsaAI	YACGTR	1 cut(s)	666
BsaJI	CCNNGG	3 cut(s)	64, 548, 939
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	944, 945
Bse1I	ACTGG	3 cut(s)	632, 761, 967
BseDI	CCNNGG	3 cut(s)	64, 548, 939
BseGI	GGATG	3 cut(s)	544, 625, 791
BseLI	CCNNNNNNNGG	2 cut(s)	944, 945
BseMII	CTCAG	2 cut(s)	372, 873
BseNI	ACTGG	3 cut(s)	632, 761, 967
BseRI	GAGGAG	3 cut(s)	68, 398, 401
BseXI	GCAGC	2 cut(s)	343, 365
BsgI	GTGCAG	1 cut(s)	688
Bsh1236I	CGCG	1 cut(s)	606
BshFI	GGCC	2 cut(s)	16, 498
BshNI	GGYRCC	1 cut(s)	656
BsiHKAI	GWGCWC	1 cut(s)	780
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	944, 945
BsmAI	GTCTC	2 cut(s)	465, 666
BsnI	GGCC	2 cut(s)	16, 498
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp143I	GATC	9 cut(s)	60, 140, 217, 235, 421, 580, 853, 895, 913
Bsp19I	CCATGG	1 cut(s)	939
BspANI	GGCC	2 cut(s)	16, 498
BspCNI	CTCAG	2 cut(s)	373, 872
BspFNI	CGCG	1 cut(s)	606
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	658, 937
BspPI	GGATC	2 cut(s)	55, 429
BspT107I	GGYRCC	1 cut(s)	656
BsrI	ACTGG	3 cut(s)	632, 761, 967
BssECI	CCNNGG	3 cut(s)	64, 548, 939
BssMI	GATC	9 cut(s)	60, 140, 217, 235, 421, 580, 853, 895, 913
BssSI	CACGAG	1 cut(s)	439
BssT1I	CCWWGG	3 cut(s)	64, 548, 939
Bst2BI	CACGAG	1 cut(s)	439
Bst4CI	ACNGT	3 cut(s)	293, 395, 1000
Bst6I	CTCTTC	1 cut(s)	421
BstBAI	YACGTR	1 cut(s)	666
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	3 cut(s)	89, 381, 859
BstDSI	CCRYGG	1 cut(s)	939
BstF5I	GGATG	3 cut(s)	544, 625, 791
BstFNI	CGCG	1 cut(s)	606
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	9 cut(s)	63, 143, 220, 238, 424, 583, 856, 898, 916
BstMAI	GTCTC	2 cut(s)	465, 666
BstMBI	GATC	9 cut(s)	60, 140, 217, 235, 421, 580, 853, 895, 913
BstMWI	GCNNNNNNNGC	1 cut(s)	797
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	2 cut(s)	343, 365
BstV2I	GAAGAC	3 cut(s)	378, 455, 1001
BsuRI	GGCC	2 cut(s)	16, 498
BtgI	CCRYGG	1 cut(s)	939
BtrI	CACGTC	1 cut(s)	985
BtsCI	GGATG	3 cut(s)	544, 625, 791
BtsIMutI	CAGTG	2 cut(s)	639, 867
Cac8I	GCNNGC	1 cut(s)	78
CciI	TCATGA	1 cut(s)	130
CfoI	GCGC	1 cut(s)	606
Cfr13I	GGNCC	1 cut(s)	935
Csp6I	GTAC	1 cut(s)	887
CviAII	CATG	8 cut(s)	131, 344, 350, 500, 504, 893, 911, 940
CviJI	RGCY	7 cut(s)	16, 76, 98, 146, 356, 367, 498
CviKI_1	RGCY	7 cut(s)	16, 76, 98, 146, 356, 367, 498
CviQI	GTAC	1 cut(s)	887
DdeI	CTNAG	3 cut(s)	89, 381, 859
DpnI	GATC	9 cut(s)	62, 142, 219, 237, 423, 582, 855, 897, 915
DpnII	GATC	9 cut(s)	60, 140, 217, 235, 421, 580, 853, 895, 913
DraI	TTTAAA	1 cut(s)	201
DraIII	CACNNNGTG	1 cut(s)	862
DrdI	GACNNNNNNGTC	2 cut(s)	925, 1003
DseDI	GACNNNNNNGTC	2 cut(s)	925, 1003
EaeI	YGGCCR	2 cut(s)	14, 496
Eam1104I	CTCTTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	421
Eco130I	CCWWGG	3 cut(s)	64, 548, 939
Eco47I	GGWCC	1 cut(s)	935
Eco57I	CTGAAG	2 cut(s)	168, 390
Eco72I	CACGTG	1 cut(s)	666
EcoT14I	CCWWGG	3 cut(s)	64, 548, 939
EcoT22I	ATGCAT	1 cut(s)	505
ErhI	CCWWGG	3 cut(s)	64, 548, 939
FaeI	CATG	8 cut(s)	134, 347, 353, 503, 507, 896, 914, 943
FalI	AAGNNNNNCTT	4 cut(s)	418, 450, 436, 468
FatI	CATG	8 cut(s)	130, 343, 349, 499, 503, 892, 910, 939
FbaI	TGATCA	3 cut(s)	217, 853, 895
Fnu4HI	GCNGC	2 cut(s)	354, 357
FokI	GGATG	3 cut(s)	531, 612, 778
Fsp4HI	GCNGC	2 cut(s)	354, 357
FspBI	CTAG	2 cut(s)	468, 717
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	2 cut(s)	354, 357
HaeIII	GGCC	2 cut(s)	16, 498
HapII	CCGG	1 cut(s)	17
HhaI	GCGC	1 cut(s)	606
Hin1II	CATG	8 cut(s)	134, 347, 353, 503, 507, 896, 914, 943
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HincII	GTYRAC	3 cut(s)	86, 160, 762
HindII	GTYRAC	3 cut(s)	86, 160, 762
HinfI	GANTC	5 cut(s)	212, 241, 722, 926, 1004
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	3 cut(s)	86, 160, 762
Hpy188I	TCNGA	6 cut(s)	217, 235, 240, 641, 691, 918
Hpy188III	TCNNGA	3 cut(s)	131, 221, 933
Hpy8I	GTNNAC	3 cut(s)	86, 160, 762
Hpy99I	CGWCG	1 cut(s)	986
HpyAV	CCTTC	5 cut(s)	143, 202, 424, 438, 805
HpyCH4III	ACNGT	3 cut(s)	293, 395, 1000
HpyCH4IV	ACGT	3 cut(s)	665, 920, 984
HpyCH4V	TGCA	8 cut(s)	317, 353, 503, 567, 591, 669, 708, 845
HpyF10VI	GCNNNNNNNGC	1 cut(s)	797
HpyF3I	CTNAG	3 cut(s)	89, 381, 859
HpySE526I	ACGT	3 cut(s)	665, 920, 984
Hsp92II	CATG	8 cut(s)	134, 347, 353, 503, 507, 896, 914, 943
HspAI	GCGC	1 cut(s)	604
Ksp22I	TGATCA	3 cut(s)	217, 853, 895
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	9 cut(s)	60, 140, 217, 235, 421, 580, 853, 895, 913
LpnPI	CCDG	8 cut(s)	30, 62, 381, 492, 645, 742, 918, 980
Lsp1109I	GCAGC	2 cut(s)	343, 365
LweI	GCATC	4 cut(s)	553, 554, 800, 969
MaeI	CTAG	2 cut(s)	468, 717
MaeII	ACGT	3 cut(s)	665, 920, 984
MaeIII	GTNAC	3 cut(s)	111, 287, 862
MalI	GATC	9 cut(s)	62, 142, 219, 237, 423, 582, 855, 897, 915
MboI	GATC	9 cut(s)	60, 140, 217, 235, 421, 580, 853, 895, 913
MboII	GAAGA	8 cut(s)	383, 438, 460, 717, 830, 848, 986, 1006
MfeI	CAATTG	1 cut(s)	849
MhlI	GDGCHC	1 cut(s)	780
MluCI	AATT	1 cut(s)	849
MlyI	GAGTC	3 cut(s)	221, 935, 1013
MnlI	CCTC	9 cut(s)	13, 36, 46, 251, 376, 379, 422, 689, 940
Mph1103I	ATGCAT	1 cut(s)	505
MroXI	GAANNNNTTC	2 cut(s)	406, 430
MseI	TTAA	5 cut(s)	123, 159, 200, 363, 813
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	849
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	1 cut(s)	797
NcoI	CCATGG	1 cut(s)	939
NdeII	GATC	9 cut(s)	60, 140, 217, 235, 421, 580, 853, 895, 913
NlaIII	CATG	8 cut(s)	134, 347, 353, 503, 507, 896, 914, 943
NlaIV	GGNNCC	2 cut(s)	658, 937
NmuCI	GTSAC	3 cut(s)	111, 287, 862
NsiI	ATGCAT	1 cut(s)	505
PagI	TCATGA	1 cut(s)	130
PdmI	GAANNNNTTC	2 cut(s)	406, 430
PfeI	GAWTC	2 cut(s)	241, 722
PkrI	GCNGC	2 cut(s)	355, 358
PleI	GAGTC	3 cut(s)	220, 934, 1012
PmaCI	CACGTG	1 cut(s)	666
PmlI	CACGTG	1 cut(s)	666
PpsI	GAGTC	3 cut(s)	220, 934, 1012
Ppu21I	YACGTR	1 cut(s)	666
PspCI	CACGTG	1 cut(s)	666
PspN4I	GGNNCC	2 cut(s)	658, 937
PspPI	GGNCC	1 cut(s)	935
PsrI	GAACNNNNNNTAC	2 cut(s)	391, 423
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	1 cut(s)	888
RsaNI	GTAC	1 cut(s)	887
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	5 cut(s)	123, 159, 200, 363, 813
SatI	GCNGC	2 cut(s)	354, 357
Sau3AI	GATC	9 cut(s)	60, 140, 217, 235, 421, 580, 853, 895, 913
Sau96I	GGNCC	1 cut(s)	935
SchI	GAGTC	3 cut(s)	221, 935, 1013
SduI	GDGCHC	1 cut(s)	780
SfaNI	GCATC	4 cut(s)	553, 554, 800, 969
SinI	GGWCC	1 cut(s)	935
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	1 cut(s)	849
SspMI	CTAG	2 cut(s)	468, 717
StyI	CCWWGG	3 cut(s)	64, 548, 939
TaaI	ACNGT	3 cut(s)	293, 395, 1000
TaiI	ACGT	3 cut(s)	668, 923, 987
TaqI	TCGA	4 cut(s)	424, 924, 963, 1002
TasI	AATT	1 cut(s)	849
TfiI	GAWTC	2 cut(s)	241, 722
Tru1I	TTAA	5 cut(s)	123, 159, 200, 363, 813
Tru9I	TTAA	5 cut(s)	123, 159, 200, 363, 813
TscAI	CASTG	2 cut(s)	639, 867
TseFI	GTSAC	3 cut(s)	111, 287, 862
TseI	GCWGC	2 cut(s)	353, 356
Tsp45I	GTSAC	3 cut(s)	111, 287, 862
TspDTI	ATGAA	4 cut(s)	724, 792, 942, 987
TspRI	CASTG	2 cut(s)	639, 867
VpaK11BI	GGWCC	1 cut(s)	935
XmnI	GAANNNNTTC	2 cut(s)	406, 430
XspI	CTAG	2 cut(s)	468, 717
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.