Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001288

Physical Location & Seq

Genomic Coordinates Reverse (-)

20146549 .. 20148266

Gene Structure 1718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g17730.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAGTGGTCATGGCCGGAGAGTGTGCTATCAAATAGGGAGAGGATGGTGGAGGAGTTGATCCAAGGGCGTGAACTGGCAAGTCAACTTAGTAGGGGTTTCGATAATAGGCCAATCCTTGTTAATGGTGTTGATGGTGGATCGGATGAGGGTACTGTTAATAAGATTTTGGGGTCTTTTGTGAATGCCCTACTGATTTTAAATGGGAAGGAGTCTGATCAGGAGTTTATTTCTGATCAGATTCAAGGAAATAGTAATGATGTTAGTGGCGGTGGTGGTGCAGATTCATCATCTTGGGATGGTAATCATGATCATGCAGCTGCTATTAAGTCTGAAGATTATACTGAGGAGGAGATCAGTTGTAAGAGCACTTCAACCTTCAAGGATCGTAGAGGTTCTTACAAGAGAAGAAAGACTTCACACTCTTGGACAAGAGACATTCCTGCTTTGATTGCCGACGGTCATGCGTGGAGAAAGTATGGACAAAAAAATATCCACAATGCCAAGCATCCAAGGAATTACTTTAGATGCACTAACAAATACGATCAGGCGTGCAAAGCAACCAAGCACGTGCAACAAGTTCAAGATCATCCACCAGTGTTTCGAACAACATATTATGGCACCCACAGTTGCAGAGACTACCTCAAAACTTCTGAATTGGTCTTGGATTGCACAAATCCTAGAGATTCTTCAAAGTTTATTAGTTTTGACAACGCCAATTGTTTTACAAACAAACAAGAGCACCCATTTCCCGCATCCTTCACTTCATCATCAGTTAAAAAAGAACTAATCGTCAAGGCAACAAGTGATCATACGGAGACAAGCCACCACAACCATTCGCTACCCAGTGATTATCTCGTGTTGCATGATGATCTGATGGAATTCGCGTCCTCTGAGCCCATGGGCGGGTTTTCATCAAGCATTGATCAGTATGATCACGACGATGTGTTTTTGAGGATGATTGCCGAGTCTTACTTTGATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

329

Amino Acids

37.08

Weight (kDa)

5.71

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22570
fragaria_vesca	FvH4_6g09650 FvH4_6g09710 FvH4_6g09710 FvH4_6g09730 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09750 FvH4_6g09760
malus_domestica	MD04G1175500.v1.1 MD04G1175600.v1.1 MD12G1189200.v1.1 MD12G1189400.v1.1 MD12G1189600.v1.1 MD12G1189700.v1.1 MD12G1189900.v1.1
prunus_persica	Prupe.6G294900_v2.0.a1 Prupe.6G295000_v2.0.a1 Prupe.6G295100_v2.0.a1
pyrus_communis	pycom04g15480 pycom04g15490 pycom12g17650 pycom12g17690 pycom12g17700 pycom12g17730
rosa_chinensis	RchiOBHm_Chr3g0460351 RchiOBHm_Chr3g0460361
rosa_laevigata	RLG00000025018 RLG00000025019 RLG00000025027 RLG00000025113
rosa_multiflora	Rmu_sc0000449.1_g000005 Rmu_sc0004267.1_g000019
rosa_roxburghii	Rroxscaffold_6G00419560 Rroxscaffold_6G00419590
rosa_rugosa	Rorug03G0033500 Rorug03G0033500 Rorug03G0041400 Rorug03G0041800 Rorug03G0042000
rosa_samantha	Rh3AG100000 Rh3AG100100 Rh3BG094800 Rh3BG103900 Rh3BG104000 Rh3CG105700 Rh3CG105800 Rh3DG105300 Rh3DG105400
rosa_wichuraiana	Rw3G008480 Rw3G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	620
AccII	CGCG	1 cut(s)	887
AciI	CCGC	3 cut(s)	270, 753, 906
AclWI	GGATC	3 cut(s)	55, 148, 393
AcoI	YGGCCR	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	881
AcuI	CTGAAG	1 cut(s)	354
AcvI	CACGTG	1 cut(s)	571
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	2 cut(s)	905, 906
AgsI	TTSAA	5 cut(s)	245, 375, 382, 584, 693
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
Alw21I	GWGCWC	2 cut(s)	371, 744
Alw26I	GTCTC	3 cut(s)	429, 630, 812
AlwI	GGATC	3 cut(s)	55, 148, 393
AoxI	GGCC	2 cut(s)	14, 110
ApeKI	GCWGC	2 cut(s)	317, 320
ApoI	RAATTY	1 cut(s)	881
Asp700I	GAANNNNTTC	1 cut(s)	415
AsuII	TTCGAA	1 cut(s)	604
BanI	GGYRCC	1 cut(s)	620
BanII	GRGCYC	1 cut(s)	900
BarI	GAAGNNNNNNTAC	2 cut(s)	355, 387
BauI	CACGAG	1 cut(s)	857
BbrPI	CACGTG	1 cut(s)	571
Bbv12I	GWGCWC	2 cut(s)	371, 744
BbvI	GCAGC	2 cut(s)	307, 329
BccI	CCATC	4 cut(s)	40, 128, 293, 871
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BclI	TGATCA	6 cut(s)	217, 235, 310, 808, 925, 934
BcoDI	GTCTC	3 cut(s)	429, 630, 812
BfaI	CTAG	1 cut(s)	681
BisI	GCNGC	2 cut(s)	318, 321
BlsI	GCNGC	2 cut(s)	319, 322
BmiI	GGNNCC	1 cut(s)	622
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	3 cut(s)	517, 518, 764
BmuI	ACTGGG	1 cut(s)	840
BplI	GAGNNNNNCTC	2 cut(s)	627, 659
Bpu14I	TTCGAA	1 cut(s)	604
BsaAI	YACGTR	1 cut(s)	571
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	3 cut(s)	64, 512, 900
Bsc4I	CCNNNNNNNGG	2 cut(s)	905, 906
Bse1I	ACTGG	3 cut(s)	81, 596, 846
Bse8I	GATNNNNATC	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	64, 512, 900
BseGI	GGATG	7 cut(s)	51, 151, 304, 508, 589, 755, 963
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	905, 906
BseMII	CTCAG	2 cut(s)	336, 885
BseNI	ACTGG	3 cut(s)	81, 596, 846
BseRI	GAGGAG	3 cut(s)	68, 362, 365
BseXI	GCAGC	2 cut(s)	307, 329
BsgI	GTGCAG	1 cut(s)	300
Bsh1236I	CGCG	1 cut(s)	887
BshFI	GGCC	2 cut(s)	16, 112
BshNI	GGYRCC	1 cut(s)	620
BsiHKAI	GWGCWC	2 cut(s)	371, 744
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	905, 906
BsmAI	GTCTC	3 cut(s)	429, 630, 812
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	16, 112
Bsp119I	TTCGAA	1 cut(s)	604
Bsp1286I	GDGCHC	3 cut(s)	371, 744, 900
Bsp19I	CCATGG	1 cut(s)	900
BspACI	CCGC	3 cut(s)	270, 753, 906
BspANI	GGCC	2 cut(s)	16, 112
BspCNI	CTCAG	2 cut(s)	337, 886
BspFNI	CGCG	1 cut(s)	887
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	622
BspPI	GGATC	3 cut(s)	55, 148, 393
BspT104I	TTCGAA	1 cut(s)	604
BspT107I	GGYRCC	1 cut(s)	620
BsrI	ACTGG	3 cut(s)	81, 596, 846
BssECI	CCNNGG	3 cut(s)	64, 512, 900
BssSI	CACGAG	1 cut(s)	857
BssT1I	CCWWGG	3 cut(s)	64, 512, 900
Bst2BI	CACGAG	1 cut(s)	857
Bst4CI	ACNGT	3 cut(s)	157, 461, 629
BstBAI	YACGTR	1 cut(s)	571
BstBI	TTCGAA	1 cut(s)	604
BstC8I	GCNNGC	1 cut(s)	553
BstDEI	CTNAG	3 cut(s)	89, 345, 894
BstDSI	CCRYGG	1 cut(s)	900
BstF5I	GGATG	7 cut(s)	51, 151, 304, 508, 589, 755, 963
BstFNI	CGCG	1 cut(s)	887
BstMAI	GTCTC	3 cut(s)	429, 630, 812
BstMWI	GCNNNNNNNGC	2 cut(s)	452, 557
BstUI	CGCG	1 cut(s)	887
BstV1I	GCAGC	2 cut(s)	307, 329
BsuRI	GGCC	2 cut(s)	16, 112
BtgI	CCRYGG	1 cut(s)	900
BtsCI	GGATG	7 cut(s)	51, 151, 304, 508, 589, 755, 963
BtsIMutI	CAGTG	2 cut(s)	603, 853
Cac8I	GCNNGC	1 cut(s)	553
CciI	TCATGA	1 cut(s)	307
CseI	GACGC	1 cut(s)	876
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	6 cut(s)	12, 308, 314, 464, 866, 901
CviJI	RGCY	5 cut(s)	16, 112, 320, 825, 898
CviKI_1	RGCY	5 cut(s)	16, 112, 320, 825, 898
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	3 cut(s)	89, 345, 894
DraI	TTTAAA	1 cut(s)	201
EaeI	YGGCCR	1 cut(s)	14
Eco130I	CCWWGG	3 cut(s)	64, 512, 900
Eco24I	GRGCYC	1 cut(s)	900
Eco57I	CTGAAG	1 cut(s)	354
Eco72I	CACGTG	1 cut(s)	571
EcoRI	GAATTC	1 cut(s)	881
EcoT14I	CCWWGG	3 cut(s)	64, 512, 900
EcoT38I	GRGCYC	1 cut(s)	900
ErhI	CCWWGG	3 cut(s)	64, 512, 900
FaeI	CATG	6 cut(s)	15, 311, 317, 467, 869, 904
FalI	AAGNNNNNCTT	2 cut(s)	400, 432
FatI	CATG	6 cut(s)	11, 307, 313, 463, 865, 900
FauI	CCCGC	2 cut(s)	760, 899
FbaI	TGATCA	6 cut(s)	217, 235, 310, 808, 925, 934
Fnu4HI	GCNGC	2 cut(s)	318, 321
FokI	GGATG	7 cut(s)	58, 158, 311, 495, 576, 742, 970
FriOI	GRGCYC	1 cut(s)	900
Fsp4HI	GCNGC	2 cut(s)	318, 321
FspBI	CTAG	1 cut(s)	681
GluI	GCNGC	2 cut(s)	318, 321
HaeIII	GGCC	2 cut(s)	16, 112
HapII	CCGG	1 cut(s)	17
HgaI	GACGC	1 cut(s)	876
Hin1II	CATG	6 cut(s)	15, 311, 317, 467, 869, 904
HincII	GTYRAC	1 cut(s)	86
HindII	GTYRAC	1 cut(s)	86
HinfI	GANTC	5 cut(s)	212, 241, 284, 686, 968
HpaII	CCGG	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	74, 86
Hpy188I	TCNGA	8 cut(s)	145, 217, 235, 240, 334, 655, 876, 895
Hpy188III	TCNNGA	4 cut(s)	221, 308, 584, 938
Hpy8I	GTNNAC	2 cut(s)	74, 86
Hpy99I	CGWCG	2 cut(s)	461, 944
HpyAV	CCTTC	3 cut(s)	202, 388, 769
HpyCH4III	ACNGT	3 cut(s)	157, 461, 629
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	8 cut(s)	281, 317, 531, 555, 574, 633, 672, 865
HpyF10VI	GCNNNNNNNGC	2 cut(s)	452, 557
HpyF3I	CTNAG	3 cut(s)	89, 345, 894
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	6 cut(s)	15, 311, 317, 467, 869, 904
Ksp22I	TGATCA	6 cut(s)	217, 235, 310, 808, 925, 934
LpnPI	CCDG	7 cut(s)	30, 62, 206, 456, 533, 609, 859
Lsp1109I	GCAGC	2 cut(s)	307, 329
LweI	GCATC	3 cut(s)	517, 518, 764
MaeI	CTAG	1 cut(s)	681
MaeII	ACGT	1 cut(s)	570
MboII	GAAGA	3 cut(s)	347, 420, 681
MfeI	CAATTG	1 cut(s)	718
MhlI	GDGCHC	3 cut(s)	371, 744, 900
MluCI	AATT	4 cut(s)	517, 656, 718, 881
MlyI	GAGTC	2 cut(s)	221, 977
MnlI	CCTC	9 cut(s)	36, 46, 142, 340, 343, 386, 653, 901, 948
MroXI	GAANNNNTTC	1 cut(s)	415
MseI	TTAA	5 cut(s)	123, 159, 200, 327, 777
MslI	CAYNNNNRTG	2 cut(s)	312, 942
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	718
Mva1269I	GAATGC	1 cut(s)	190
MvnI	CGCG	1 cut(s)	887
MwoI	GCNNNNNNNGC	2 cut(s)	452, 557
NcoI	CCATGG	1 cut(s)	900
NlaIII	CATG	6 cut(s)	15, 311, 317, 467, 869, 904
NlaIV	GGNNCC	1 cut(s)	622
NspV	TTCGAA	1 cut(s)	604
PagI	TCATGA	1 cut(s)	307
PctI	GAATGC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	415
PfeI	GAWTC	3 cut(s)	241, 284, 686
PkrI	GCNGC	2 cut(s)	319, 322
PleI	GAGTC	2 cut(s)	220, 976
PmaCI	CACGTG	1 cut(s)	571
PmlI	CACGTG	1 cut(s)	571
PpsI	GAGTC	2 cut(s)	220, 976
Ppu21I	YACGTR	1 cut(s)	571
PspCI	CACGTG	1 cut(s)	571
PspN4I	GGNNCC	1 cut(s)	622
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	2 cut(s)	312, 942
SaqAI	TTAA	5 cut(s)	123, 159, 200, 327, 777
SatI	GCNGC	2 cut(s)	318, 321
SchI	GAGTC	2 cut(s)	221, 977
SduI	GDGCHC	3 cut(s)	371, 744, 900
SetI	ASST	5 cut(s)	322, 380, 397, 573, 645
SfaNI	GCATC	3 cut(s)	517, 518, 764
SfuI	TTCGAA	1 cut(s)	604
SmiMI	CAYNNNNRTG	2 cut(s)	312, 942
Sse9I	AATT	4 cut(s)	517, 656, 718, 881
SsiI	CCGC	3 cut(s)	270, 753, 906
SspMI	CTAG	1 cut(s)	681
StyI	CCWWGG	3 cut(s)	64, 512, 900
TaaI	ACNGT	3 cut(s)	157, 461, 629
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	2 cut(s)	102, 604
TasI	AATT	4 cut(s)	517, 656, 718, 881
TfiI	GAWTC	3 cut(s)	241, 284, 686
Tru1I	TTAA	5 cut(s)	123, 159, 200, 327, 777
Tru9I	TTAA	5 cut(s)	123, 159, 200, 327, 777
TscAI	CASTG	2 cut(s)	603, 853
TseI	GCWGC	2 cut(s)	317, 320
TspDTI	ATGAA	3 cut(s)	276, 756, 903
TspGWI	ACGGA	1 cut(s)	830
TspRI	CASTG	2 cut(s)	603, 853
XapI	RAATTY	1 cut(s)	881
XmnI	GAANNNNTTC	1 cut(s)	415
XspI	CTAG	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.