Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001288

Physical Location & Seq

Genomic Coordinates Forward (+)

5808487 .. 5810496

Gene Structure 2010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGAGTGGACTTGGCCGAAGAGTGTGTCGTCGAACCGGCAGAGGGTGATGGAGGAGCTGGTTCAAGGTCGGGAGATGGCTAACCAGCTTCGGGGGGTTCTCAGTGGTGACGTCAGATCCGCGGAGGGTCTTGTTACGAAGATCTTGGGGTCGCTCACCAACACCCTTCTTATCTTGAGTGGGAGTCAAGAGCCTAAGGAGGAGCTCATTTATTCTCAGATTCAAGCCAATAGTAGTAATATAAGTGCTGTTACTGCTTCTGGTTCTGCTACTGCTGGCCCTGATTCATCGTCTTGGGATTTAGTTCATGACGATGCTATGAAGTCGGAGGATTCCAATGAAGAGAGTTGCAAGAGTACCGAAACGTTTAAGGATCGCAGGGGTTCTTACAAGAGAAGAAAAACTTTACATTCGTGGACCAAAGACACTCTGGATTTAGTGGACGATGGTCATGCATGGAGAAAGTACGGACAAAAGACGATTCTAAATACCACACATCCAAGAAACTACTTCAGGTGCACTCATAAGTTTGATCAAGGCTGCAAGGCAACCAAACACGTTCAGAGGATTAAAGACGAACCCCAACTCTTTCGGACCACATACATTGGCAATCACACTTGCACCGGCTCTCTTAGAGATCCTGAGCTCATCTTGGATTGTTCAAGTCGTCAAGAGACTTCCCAGAATATGATCAGATTCGACAGCACCGACAACGCTTTGTCCTGCAAACAAGAACATCCCTTTTTCTCAGCCTTCACGTCGATCAAAAAAGAGAGCGTCAAGGAAGAAGAGATGATCAAACCAATTAGTGATCACGATCACATGACCAACCACAACCGATCTTCGTCGTCGTCTGATTATCTCATGTCGTCGGGTCTAGGTGTGTTTGAGTCCTCCGGCGACCTCAACAGTGAGTTCTCCGGCGACCTCAACAGTGAGTTCTCTTCAACGGCCGTGTACGATCACGATGATGTGATTTCTAGGATAATGGGGGGATGCTTCGACATTGAAGTTGATTTTTCATATGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

345

Amino Acids

38.76

Weight (kDa)

5.41

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	148 - 207	6.5e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22570
fragaria_vesca	FvH4_6g09650 FvH4_6g09710 FvH4_6g09710 FvH4_6g09730 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09750 FvH4_6g09760
malus_domestica	MD04G1175500.v1.1 MD04G1175600.v1.1 MD12G1189200.v1.1 MD12G1189400.v1.1 MD12G1189600.v1.1 MD12G1189700.v1.1 MD12G1189900.v1.1
prunus_persica	Prupe.6G294900_v2.0.a1 Prupe.6G295000_v2.0.a1 Prupe.6G295100_v2.0.a1
pyrus_communis	pycom04g15480 pycom04g15490 pycom12g17650 pycom12g17690 pycom12g17700 pycom12g17730
rosa_chinensis	RchiOBHm_Chr3g0460351 RchiOBHm_Chr3g0460361
rosa_laevigata	RLG00000025018 RLG00000025019 RLG00000025027 RLG00000025113
rosa_multiflora	Rmu_sc0000449.1_g000005 Rmu_sc0004267.1_g000019
rosa_roxburghii	Rroxscaffold_6G00419560 Rroxscaffold_6G00419590
rosa_rugosa	Rorug03G0033500 Rorug03G0033500 Rorug03G0041400 Rorug03G0041800 Rorug03G0042000
rosa_samantha	Rh3AG100000 Rh3AG100100 Rh3BG094800 Rh3BG103900 Rh3BG104000 Rh3CG105700 Rh3CG105800 Rh3DG105300 Rh3DG105400
rosa_wichuraiana	Rw3G008480 Rw3G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccII	CGCG	1 cut(s)	122
AciI	CCGC	2 cut(s)	120, 122
AclI	AACGTT	1 cut(s)	365
AclWI	GGATC	3 cut(s)	111, 381, 632
AcoI	YGGCCR	2 cut(s)	14, 951
AcsI	RAATTY	1 cut(s)	1028
AcuI	CTGAAG	1 cut(s)	496
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	3 cut(s)	358, 467, 959
AfiI	CCNNNNNNNGG	2 cut(s)	43, 91
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	5 cut(s)	65, 224, 663, 948, 1010
AjiI	CACGTC	1 cut(s)	759
AluBI	AGCT	4 cut(s)	58, 88, 205, 646
AluI	AGCT	4 cut(s)	58, 88, 205, 646
Alw21I	GWGCWC	3 cut(s)	207, 521, 648
Alw26I	GTCTC	1 cut(s)	668
Alw44I	GTGCAC	1 cut(s)	517
AlwI	GGATC	3 cut(s)	111, 381, 632
AoxI	GGCC	3 cut(s)	14, 277, 951
ApaLI	GTGCAC	1 cut(s)	517
ApeKI	GCWGC	1 cut(s)	540
ApoI	RAATTY	1 cut(s)	1028
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AspS9I	GGNCC	3 cut(s)	278, 417, 594
AsuHPI	GGTGA	3 cut(s)	58, 119, 148
AvaII	GGWCC	2 cut(s)	417, 594
AxyI	CCTNAGG	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	521
BanII	GRGCYC	2 cut(s)	207, 648
Bbv12I	GWGCWC	3 cut(s)	207, 521, 648
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	3 cut(s)	43, 70, 440
BceAI	ACGGC	2 cut(s)	938, 966
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BclI	TGATCA	4 cut(s)	532, 690, 795, 811
BcoDI	GTCTC	1 cut(s)	668
BfaI	CTAG	2 cut(s)	878, 981
BglII	AGATCT	1 cut(s)	141
BisI	GCNGC	1 cut(s)	541
BlsI	GCNGC	1 cut(s)	542
Bme18I	GGWCC	2 cut(s)	417, 594
BmgBI	CACGTC	1 cut(s)	759
BmgT120I	GGNCC	3 cut(s)	278, 417, 594
BmsI	GCATC	2 cut(s)	304, 986
BoxI	GACNNNNGTC	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	816
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 91
Bse118I	RCCGGY	2 cut(s)	36, 623
Bse21I	CCTNAGG	1 cut(s)	195
Bse8I	GATNNNNATC	1 cut(s)	816
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	3 cut(s)	496, 736, 1001
BseJI	GATNNNNATC	1 cut(s)	816
BseLI	CCNNNNNNNGG	2 cut(s)	43, 91
BseMII	CTCAG	4 cut(s)	115, 230, 633, 762
BseRI	GAGGAG	2 cut(s)	68, 215
BseSI	GKGCMC	1 cut(s)	521
BseX3I	CGGCCG	1 cut(s)	951
BseXI	GCAGC	1 cut(s)	527
Bsh1236I	CGCG	1 cut(s)	122
Bsh1285I	CGRYCG	1 cut(s)	954
BshFI	GGCC	3 cut(s)	16, 279, 953
BsiEI	CGRYCG	1 cut(s)	954
BsiHKAI	GWGCWC	3 cut(s)	207, 521, 648
BsiSI	CCGG	4 cut(s)	37, 624, 897, 921
BslI	CCNNNNNNNGG	2 cut(s)	43, 91
BsmAI	GTCTC	1 cut(s)	668
BsnI	GGCC	3 cut(s)	16, 279, 953
Bsp1286I	GDGCHC	3 cut(s)	207, 521, 648
BspACI	CCGC	2 cut(s)	120, 122
BspANI	GGCC	3 cut(s)	16, 279, 953
BspCNI	CTCAG	4 cut(s)	114, 229, 634, 761
BspFNI	CGCG	1 cut(s)	122
BspHI	TCATGA	1 cut(s)	307
BspPI	GGATC	3 cut(s)	111, 381, 632
BsrFI	RCCGGY	2 cut(s)	36, 623
BssAI	RCCGGY	2 cut(s)	36, 623
BssECI	CCNNGG	1 cut(s)	120
BssNI	GRCGYC	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	911, 935
Bst6I	CTCTTC	4 cut(s)	14, 336, 783, 949
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	6 cut(s)	101, 195, 216, 632, 642, 748
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	3 cut(s)	496, 736, 1001
BstFNI	CGCG	1 cut(s)	122
BstMAI	GTCTC	1 cut(s)	668
BstMCI	CGRYCG	1 cut(s)	954
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstPAI	GACNNNNGTC	1 cut(s)	447
BstSLI	GKGCMC	1 cut(s)	521
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	527
BstX2I	RGATCY	3 cut(s)	116, 141, 637
BstYI	RGATCY	3 cut(s)	116, 141, 637
BstZI	CGGCCG	1 cut(s)	951
Bsu36I	CCTNAGG	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	16, 279, 953
BtgI	CCRYGG	1 cut(s)	120
BtrI	CACGTC	1 cut(s)	759
BtsCI	GGATG	3 cut(s)	496, 736, 1001
BtsIMutI	CAGTG	3 cut(s)	109, 916, 940
Cac8I	GCNNGC	1 cut(s)	277
CciI	TCATGA	1 cut(s)	307
Cfr10I	RCCGGY	2 cut(s)	36, 623
Cfr13I	GGNCC	3 cut(s)	278, 417, 594
Cfr42I	CCGCGG	1 cut(s)	123
CseI	GACGC	1 cut(s)	766
Csp6I	GTAC	3 cut(s)	357, 466, 958
CspCI	CAANNNNNGTGG	2 cut(s)	586, 621
CviAII	CATG	5 cut(s)	308, 452, 456, 823, 865
CviQI	GTAC	3 cut(s)	357, 466, 958
DdeI	CTNAG	6 cut(s)	101, 195, 216, 632, 642, 748
EaeI	YGGCCR	2 cut(s)	14, 951
EagI	CGGCCG	1 cut(s)	951
Eam1104I	CTCTTC	4 cut(s)	14, 336, 783, 949
EarI	CTCTTC	4 cut(s)	14, 336, 783, 949
Ecl136II	GAGCTC	2 cut(s)	205, 646
EclXI	CGGCCG	1 cut(s)	951
Eco24I	GRGCYC	2 cut(s)	207, 648
Eco47I	GGWCC	2 cut(s)	417, 594
Eco52I	CGGCCG	1 cut(s)	951
Eco53kI	GAGCTC	2 cut(s)	205, 646
Eco57I	CTGAAG	1 cut(s)	496
Eco81I	CCTNAGG	1 cut(s)	195
EcoICRI	GAGCTC	2 cut(s)	205, 646
EcoT22I	ATGCAT	1 cut(s)	457
EcoT38I	GRGCYC	2 cut(s)	207, 648
FaeI	CATG	5 cut(s)	311, 455, 459, 826, 868
FalI	AAGNNNNNCTT	2 cut(s)	388, 420
FatI	CATG	5 cut(s)	307, 451, 455, 822, 864
FauNDI	CATATG	1 cut(s)	1024
FbaI	TGATCA	4 cut(s)	532, 690, 795, 811
Fnu4HI	GCNGC	1 cut(s)	541
FokI	GGATG	3 cut(s)	483, 723, 1008
FriOI	GRGCYC	2 cut(s)	207, 648
Fsp4HI	GCNGC	1 cut(s)	541
FspBI	CTAG	2 cut(s)	878, 981
GluI	GCNGC	1 cut(s)	541
HaeIII	GGCC	3 cut(s)	16, 279, 953
HapII	CCGG	4 cut(s)	37, 624, 897, 921
HgaI	GACGC	1 cut(s)	766
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	5 cut(s)	311, 455, 459, 826, 868
HinfI	GANTC	7 cut(s)	184, 220, 284, 332, 481, 696, 890
HpaII	CCGG	4 cut(s)	37, 624, 897, 921
HphI	GGTGA	3 cut(s)	58, 119, 148
Hpy166II	GTNNAC	5 cut(s)	9, 417, 442, 519, 958
Hpy188I	TCNGA	7 cut(s)	116, 219, 328, 564, 594, 695, 856
Hpy188III	TCNNGA	9 cut(s)	71, 175, 188, 308, 431, 641, 671, 815, 965
Hpy8I	GTNNAC	5 cut(s)	9, 417, 442, 519, 958
Hpy99I	CGWCG	5 cut(s)	34, 763, 850, 853, 874
HpyAV	CCTTC	2 cut(s)	176, 763
HpyCH4III	ACNGT	2 cut(s)	911, 935
HpyCH4IV	ACGT	4 cut(s)	111, 365, 558, 758
HpyCH4V	TGCA	6 cut(s)	351, 455, 519, 543, 621, 726
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	6 cut(s)	101, 195, 216, 632, 642, 748
HpySE526I	ACGT	4 cut(s)	111, 365, 558, 758
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	5 cut(s)	311, 455, 459, 826, 868
Ksp22I	TGATCA	4 cut(s)	532, 690, 795, 811
KspI	CCGCGG	1 cut(s)	123
LmnI	GCTCC	2 cut(s)	55, 202
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	2 cut(s)	304, 986
MaeI	CTAG	2 cut(s)	878, 981
MaeII	ACGT	4 cut(s)	111, 365, 558, 758
MaeIII	GTNAC	3 cut(s)	107, 133, 250
MboII	GAAGA	8 cut(s)	31, 151, 353, 408, 797, 800, 834, 936
MflI	RGATCY	3 cut(s)	116, 141, 637
MhlI	GDGCHC	3 cut(s)	207, 521, 648
MluCI	AATT	2 cut(s)	804, 1028
MlyI	GAGTC	2 cut(s)	193, 899
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	9 cut(s)	36, 46, 118, 193, 322, 558, 904, 914, 938
Mph1103I	ATGCAT	1 cut(s)	457
MseI	TTAA	2 cut(s)	369, 570
MslI	CAYNNNNRTG	2 cut(s)	312, 969
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	4 cut(s)	37, 624, 897, 921
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeI	CATATG	1 cut(s)	1024
NlaIII	CATG	5 cut(s)	311, 455, 459, 826, 868
NmuCI	GTSAC	1 cut(s)	107
NsiI	ATGCAT	1 cut(s)	457
PagI	TCATGA	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	705
PfeI	GAWTC	5 cut(s)	220, 284, 332, 481, 696
PkrI	GCNGC	1 cut(s)	542
PleI	GAGTC	2 cut(s)	192, 898
PpsI	GAGTC	2 cut(s)	192, 898
PshAI	GACNNNNGTC	1 cut(s)	447
Psp124BI	GAGCTC	2 cut(s)	207, 648
Psp1406I	AACGTT	1 cut(s)	365
PspPI	GGNCC	3 cut(s)	278, 417, 594
PsuI	RGATCY	3 cut(s)	116, 141, 637
RsaI	GTAC	3 cut(s)	358, 467, 959
RsaNI	GTAC	3 cut(s)	357, 466, 958
RseI	CAYNNNNRTG	2 cut(s)	312, 969
SacI	GAGCTC	2 cut(s)	207, 648
SacII	CCGCGG	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	369, 570
SatI	GCNGC	1 cut(s)	541
Sau96I	GGNCC	3 cut(s)	278, 417, 594
SchI	GAGTC	2 cut(s)	193, 899
SduI	GDGCHC	3 cut(s)	207, 521, 648
SfaNI	GCATC	2 cut(s)	304, 986
Sfr303I	CCGCGG	1 cut(s)	123
SgrBI	CCGCGG	1 cut(s)	123
SinI	GGWCC	2 cut(s)	417, 594
SmiMI	CAYNNNNRTG	2 cut(s)	312, 969
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
Sse9I	AATT	2 cut(s)	804, 1028
SsiI	CCGC	2 cut(s)	120, 122
SspMI	CTAG	2 cut(s)	878, 981
SstI	GAGCTC	2 cut(s)	207, 648
TaaI	ACNGT	2 cut(s)	911, 935
TaiI	ACGT	4 cut(s)	114, 368, 561, 761
TaqI	TCGA	4 cut(s)	32, 699, 761, 1002
TasI	AATT	2 cut(s)	804, 1028
TfiI	GAWTC	5 cut(s)	220, 284, 332, 481, 696
Tru1I	TTAA	2 cut(s)	369, 570
Tru9I	TTAA	2 cut(s)	369, 570
TscAI	CASTG	3 cut(s)	109, 916, 940
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	540
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	5 cut(s)	276, 296, 335, 354, 1011
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	3 cut(s)	109, 916, 940
VneI	GTGCAC	1 cut(s)	517
VpaK11BI	GGWCC	2 cut(s)	417, 594
XapI	RAATTY	1 cut(s)	1028
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XspI	CTAG	2 cut(s)	878, 981
ZraI	GACGTC	1 cut(s)	112
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.