Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001288

Physical Location & Seq

Genomic Coordinates Reverse (-)

26669452 .. 26671247

Gene Structure 1796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1175600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAAGAGTGTGATACCAAATAGGGAGAGAGCGACGGAGGAATTGATCCAAGGGCGTGAACTGGCAAGTCAACTGAGTAAGGTTTTTGAAAATAGGTCATTTGTTGTTGATGGTGATGAGGGGGGATCCGCTGAAGGCATTGTTAATAAGATTTTGGGGTCATTTGTGAATTCCCTTTTGATTATAAAGGGGATGGAGTCTGATCAGGAGTTTGTTTCTGATCAAATTCAAGGGAATAGTAGTGGTGTTAGTGGTGGTGGTACTGAAATTAGCGGTGGTGGTATTGGTGTTAGTGACGGTGGTAGTGGTGGTGGTGGTGGTGACGGTGCAGATTCATCATCTTGGGATACTAATCATGATCATGCGGCTGTTAGTAAGTCTGAAGATTATACTGAGGAGGAGATCAGTTGTAAGAGCACTTCAACCTTCAAGGATCGTAGAGGTTCTTATAAGAGAAGAAAGACTTCACACTCTTGGATTAGAGACACTCCTGCTTTGACTTACGATGGTCATGCATGGAGAAAGTACGGGCAAAAAGTTATCCACAATGCCAAGCATTCAAGAAACTACTTCAGATGCACTCACAAATCCGAGTGCAAAGCAACCAAACACGTGCAACAAATTCAAGATCATCCACCACTGTTTCGGACCACATATTTTGGGAATCACACCTGCAGAGACTACCTCAGCGCTTCGAAATTGGTCTTGGATTCCACTAGTCCTAAAGATTCTTCAAAGTTCATTTGTTTTGACAAGGCCAACTGTTTGACAAAGAAAGAAGAGCACCCCTTTTTCTCATCCTTCACTTTATCGGTTAAAAATGAAGTGTTCGTCAAAGAAGATATGCCAACAACTGATCATATGCTAAAAAGCAACCACAACCATTCATCACCACGTGATCATCTTGTGTCGAATGATCTGACGGTGTTCGAGTCCTCTAGTCCCATGAGCGGGTTTTCATATGATTATGACAACATGTTTTCATGGGCTGTCGATTCTTACTTTGATAATGAAGTTTTGCAATACGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

345

Amino Acids

38.25

Weight (kDa)

6.01

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	169 - 225	4.9e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22570
fragaria_vesca	FvH4_6g09650 FvH4_6g09710 FvH4_6g09710 FvH4_6g09730 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09750 FvH4_6g09760
malus_domestica	MD04G1175500.v1.1 MD04G1175600.v1.1 MD12G1189200.v1.1 MD12G1189400.v1.1 MD12G1189600.v1.1 MD12G1189700.v1.1 MD12G1189900.v1.1
prunus_persica	Prupe.6G294900_v2.0.a1 Prupe.6G295000_v2.0.a1 Prupe.6G295100_v2.0.a1
pyrus_communis	pycom04g15480 pycom04g15490 pycom12g17650 pycom12g17690 pycom12g17700 pycom12g17730
rosa_chinensis	RchiOBHm_Chr3g0460351 RchiOBHm_Chr3g0460361
rosa_laevigata	RLG00000025018 RLG00000025019 RLG00000025027 RLG00000025113
rosa_multiflora	Rmu_sc0000449.1_g000005 Rmu_sc0004267.1_g000019
rosa_roxburghii	Rroxscaffold_6G00419560 Rroxscaffold_6G00419590
rosa_rugosa	Rorug03G0033500 Rorug03G0033500 Rorug03G0041400 Rorug03G0041800 Rorug03G0042000
rosa_samantha	Rh3AG100000 Rh3AG100100 Rh3BG094800 Rh3BG103900 Rh3BG104000 Rh3CG105700 Rh3CG105800 Rh3DG105300 Rh3DG105400
rosa_wichuraiana	Rw3G008480 Rw3G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	185, 450
AarI	CACCTGC	1 cut(s)	680
Acc36I	ACCTGC	1 cut(s)	680
AccBSI	CCGCTC	1 cut(s)	951
AciI	CCGC	4 cut(s)	129, 273, 365, 951
AclWI	GGATC	4 cut(s)	40, 120, 133, 441
AcsI	RAATTY	3 cut(s)	169, 225, 621
AcuI	CTGAAG	3 cut(s)	153, 402, 556
AcvI	CACGTG	2 cut(s)	613, 896
AdeI	CACNNNGTG	1 cut(s)	896
AfaI	GTAC	2 cut(s)	262, 527
AfeI	AGCGCT	1 cut(s)	691
AfiI	CCNNNNNNNGG	2 cut(s)	950, 951
AflIII	ACRYGT	2 cut(s)	610, 975
AgsI	TTSAA	7 cut(s)	89, 230, 423, 430, 561, 626, 735
AhlI	ACTAGT	1 cut(s)	716
AjuI	GAANNNNNNNTTGG	2 cut(s)	689, 721
Alw21I	GWGCWC	2 cut(s)	419, 786
Alw26I	GTCTC	2 cut(s)	477, 672
AlwI	GGATC	4 cut(s)	40, 120, 133, 441
Aor51HI	AGCGCT	1 cut(s)	691
AoxI	GGCC	1 cut(s)	756
ApoI	RAATTY	3 cut(s)	169, 225, 621
Asp700I	GAANNNNTTC	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	692
AspS9I	GGNCC	1 cut(s)	648
AsuHPI	GGTGA	3 cut(s)	125, 332, 882
AsuII	TTCGAA	1 cut(s)	695
AvaII	GGWCC	1 cut(s)	648
BamHI	GGATCC	1 cut(s)	125
BarI	GAAGNNNNNNTAC	2 cut(s)	403, 435
BbrPI	CACGTG	2 cut(s)	613, 896
Bbv12I	GWGCWC	2 cut(s)	419, 786
BbvCI	CCTCAGC	1 cut(s)	686
BccI	CCATC	3 cut(s)	104, 187, 500
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BciVI	GTATCC	1 cut(s)	340
BclI	TGATCA	5 cut(s)	202, 220, 358, 856, 898
BcoDI	GTCTC	2 cut(s)	477, 672
BcuI	ACTAGT	1 cut(s)	716
BfaI	CTAG	2 cut(s)	717, 939
BfmI	CTRYAG	1 cut(s)	673
BfoI	RGCGCY	1 cut(s)	693
BfuAI	ACCTGC	1 cut(s)	680
BfuI	GTATCC	1 cut(s)	340
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme18I	GGWCC	1 cut(s)	648
BmgT120I	GGNCC	1 cut(s)	648
BmiI	GGNNCC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	566
BplI	GAGNNNNNCTC	2 cut(s)	669, 701
Bpu10I	CCTNAGC	1 cut(s)	686
Bpu14I	TTCGAA	1 cut(s)	695
BsaAI	YACGTR	2 cut(s)	613, 896
BsaBI	GATNNNNATC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	2 cut(s)	950, 951
Bse1I	ACTGG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	3 cut(s)	198, 631, 797
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	950, 951
BseMII	CTCAG	3 cut(s)	65, 384, 700
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	2 cut(s)	410, 413
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	758
BsiHKAI	GWGCWC	2 cut(s)	419, 786
BslFI	GGGAC	1 cut(s)	927
BslI	CCNNNNNNNGG	2 cut(s)	950, 951
BsmAI	GTCTC	2 cut(s)	477, 672
BsmFI	GGGAC	1 cut(s)	927
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	1 cut(s)	758
Bsp119I	TTCGAA	1 cut(s)	695
Bsp1286I	GDGCHC	2 cut(s)	419, 786
BspACI	CCGC	4 cut(s)	129, 273, 365, 951
BspANI	GGCC	1 cut(s)	758
BspCNI	CTCAG	3 cut(s)	66, 385, 699
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	677
BspMI	ACCTGC	1 cut(s)	680
BspPI	GGATC	4 cut(s)	40, 120, 133, 441
BspQI	GCTCTTC	1 cut(s)	774
BspT104I	TTCGAA	1 cut(s)	695
BsrBI	CCGCTC	1 cut(s)	951
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	49
Bst4CI	ACNGT	5 cut(s)	299, 326, 642, 764, 925
Bst6I	CTCTTC	1 cut(s)	774
BstBAI	YACGTR	2 cut(s)	613, 896
BstBI	TTCGAA	1 cut(s)	695
BstDEI	CTNAG	3 cut(s)	74, 393, 686
BstF5I	GGATG	3 cut(s)	198, 631, 797
BstH2I	RGCGCY	1 cut(s)	693
BstHHI	GCGC	1 cut(s)	692
BstMAI	GTCTC	2 cut(s)	477, 672
BstNSI	RCATGY	1 cut(s)	979
BstSFI	CTRYAG	1 cut(s)	673
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BsuI	GTATCC	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	758
BtsCI	GGATG	3 cut(s)	198, 631, 797
BtsIMutI	CAGTG	1 cut(s)	638
BveI	ACCTGC	1 cut(s)	680
CciI	TCATGA	1 cut(s)	355
CfoI	GCGC	1 cut(s)	692
Cfr13I	GGNCC	1 cut(s)	648
Csp6I	GTAC	2 cut(s)	261, 526
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	7 cut(s)	356, 362, 512, 516, 946, 976, 984
CviJI	RGCY	3 cut(s)	368, 758, 989
CviKI_1	RGCY	3 cut(s)	368, 758, 989
CviQI	GTAC	2 cut(s)	261, 526
DdeI	CTNAG	3 cut(s)	74, 393, 686
DraIII	CACNNNGTG	1 cut(s)	896
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
Eco130I	CCWWGG	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	648
Eco47III	AGCGCT	1 cut(s)	691
Eco57I	CTGAAG	3 cut(s)	153, 402, 556
Eco72I	CACGTG	2 cut(s)	613, 896
EcoRI	GAATTC	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	49
EcoT22I	ATGCAT	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	7 cut(s)	359, 365, 515, 519, 949, 979, 987
FalI	AAGNNNNNCTT	2 cut(s)	448, 480
FaqI	GGGAC	1 cut(s)	927
FatI	CATG	7 cut(s)	355, 361, 511, 515, 945, 975, 983
FauI	CCCGC	1 cut(s)	944
FauNDI	CATATG	2 cut(s)	861, 961
FbaI	TGATCA	5 cut(s)	202, 220, 358, 856, 898
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	3 cut(s)	205, 618, 784
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	2 cut(s)	717, 939
GlaI	GCGC	1 cut(s)	691
GluI	GCNGC	1 cut(s)	366
HaeII	RGCGCY	1 cut(s)	693
HaeIII	GGCC	1 cut(s)	758
HhaI	GCGC	1 cut(s)	692
Hin1II	CATG	7 cut(s)	359, 365, 515, 519, 949, 979, 987
Hin6I	GCGC	1 cut(s)	690
HinP1I	GCGC	1 cut(s)	690
HincII	GTYRAC	1 cut(s)	71
HindII	GTYRAC	1 cut(s)	71
HinfI	GANTC	7 cut(s)	197, 332, 664, 710, 728, 932, 995
HphI	GGTGA	3 cut(s)	125, 332, 882
Hpy166II	GTNNAC	2 cut(s)	59, 71
Hpy188I	TCNGA	7 cut(s)	202, 220, 382, 575, 592, 648, 921
Hpy188III	TCNNGA	4 cut(s)	206, 356, 561, 626
Hpy8I	GTNNAC	2 cut(s)	59, 71
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	3 cut(s)	128, 436, 811
HpyCH4III	ACNGT	5 cut(s)	299, 326, 642, 764, 925
HpyCH4IV	ACGT	2 cut(s)	612, 895
HpyCH4V	TGCA	7 cut(s)	329, 515, 579, 597, 616, 675, 1021
HpyF3I	CTNAG	3 cut(s)	74, 393, 686
HpySE526I	ACGT	2 cut(s)	612, 895
Hsp92II	CATG	7 cut(s)	359, 365, 515, 519, 949, 979, 987
HspAI	GCGC	1 cut(s)	690
Ksp22I	TGATCA	5 cut(s)	202, 220, 358, 856, 898
LguI	GCTCTTC	1 cut(s)	774
LpnPI	CCDG	4 cut(s)	47, 191, 504, 685
LweI	GCATC	1 cut(s)	566
MaeI	CTAG	2 cut(s)	717, 939
MaeII	ACGT	2 cut(s)	612, 895
MaeIII	GTNAC	2 cut(s)	293, 320
MbiI	CCGCTC	1 cut(s)	951
MboII	GAAGA	6 cut(s)	16, 395, 468, 723, 791, 851
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	2 cut(s)	419, 786
MluCI	AATT	6 cut(s)	41, 169, 225, 267, 621, 698
MlyI	GAGTC	2 cut(s)	206, 941
MnlI	CCTC	7 cut(s)	31, 112, 388, 391, 434, 695, 946
Mph1103I	ATGCAT	1 cut(s)	517
MroXI	GAANNNNTTC	1 cut(s)	463
MseI	TTAA	2 cut(s)	144, 816
MslI	CAYNNNNRTG	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	556
NdeI	CATATG	2 cut(s)	861, 961
NlaIII	CATG	7 cut(s)	359, 365, 515, 519, 949, 979, 987
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	2 cut(s)	293, 320
NsiI	ATGCAT	1 cut(s)	517
NspI	RCATGY	1 cut(s)	979
NspV	TTCGAA	1 cut(s)	695
PagI	TCATGA	1 cut(s)	355
PaqCI	CACCTGC	1 cut(s)	680
PciI	ACATGT	1 cut(s)	975
PciSI	GCTCTTC	1 cut(s)	774
PctI	GAATGC	1 cut(s)	556
PdmI	GAANNNNTTC	1 cut(s)	463
PfeI	GAWTC	5 cut(s)	332, 664, 710, 728, 995
PkrI	GCNGC	1 cut(s)	367
PleI	GAGTC	2 cut(s)	205, 940
PmaCI	CACGTG	2 cut(s)	613, 896
PmlI	CACGTG	2 cut(s)	613, 896
PpsI	GAGTC	2 cut(s)	205, 940
Ppu21I	YACGTR	2 cut(s)	613, 896
PscI	ACATGT	1 cut(s)	975
PsiI	TTATAA	2 cut(s)	185, 450
PspCI	CACGTG	2 cut(s)	613, 896
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	648
PstI	CTGCAG	1 cut(s)	677
PsuI	RGATCY	1 cut(s)	125
RsaI	GTAC	2 cut(s)	262, 527
RsaNI	GTAC	2 cut(s)	261, 526
RseI	CAYNNNNRTG	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	774
SaqAI	TTAA	2 cut(s)	144, 816
SatI	GCNGC	1 cut(s)	366
Sau96I	GGNCC	1 cut(s)	648
SchI	GAGTC	2 cut(s)	206, 941
SduI	GDGCHC	2 cut(s)	419, 786
SetI	ASST	8 cut(s)	84, 98, 428, 445, 615, 674, 687, 898
SfaNI	GCATC	1 cut(s)	566
SfcI	CTRYAG	1 cut(s)	673
SfuI	TTCGAA	1 cut(s)	695
SinI	GGWCC	1 cut(s)	648
SmiMI	CAYNNNNRTG	1 cut(s)	360
SpeI	ACTAGT	1 cut(s)	716
Sse9I	AATT	6 cut(s)	41, 169, 225, 267, 621, 698
SsiI	CCGC	4 cut(s)	129, 273, 365, 951
SspMI	CTAG	2 cut(s)	717, 939
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	5 cut(s)	299, 326, 642, 764, 925
TaiI	ACGT	2 cut(s)	615, 898
TaqI	TCGA	4 cut(s)	695, 911, 930, 993
TasI	AATT	6 cut(s)	41, 169, 225, 267, 621, 698
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	5 cut(s)	332, 664, 710, 728, 995
Tru1I	TTAA	2 cut(s)	144, 816
Tru9I	TTAA	2 cut(s)	144, 816
TscAI	CASTG	1 cut(s)	645
TseFI	GTSAC	2 cut(s)	293, 320
Tsp45I	GTSAC	2 cut(s)	293, 320
TspDTI	ATGAA	8 cut(s)	17, 324, 730, 837, 876, 948, 972, 1026
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	645
VpaK11BI	GGWCC	1 cut(s)	648
XapI	RAATTY	3 cut(s)	169, 225, 621
XceI	RCATGY	1 cut(s)	979
XmnI	GAANNNNTTC	1 cut(s)	463
XspI	CTAG	2 cut(s)	717, 939
Zsp2I	ATGCAT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.