Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001288

Physical Location & Seq

Genomic Coordinates Reverse (-)

27163679 .. 27164155

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1189400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAGTGGTCGTGGTCGGACAGTGTGCTCTCAAATAGGGAGAGGGTTATGGAGGAGTTGATCCAAGGCCGTGAACTGGCAAGTCAACTTAGTACGGCTTACGATAACAGGTCAGTTGTTAACGGTGATGATGAGGGATCGGCTGAAGGTTTTGTTAATACCCTTTTGATTTTAAATGGGAAGGAGTCTGATCAGGAGTTTGTTTCTGACCAGATTCAAGGAAATAGTAGTGGTGTTAGTGGTGGTGGTGGTGGTGTTAGTGACGGTGGTAGTGTTGTTAGTGGTGGTGGTGGTGGTGGTGGTGGTGTTAGTGACGGTGGTAGTGTTGTTAGTGGTGGTGGTGCTGATTTATCATCTTGGGATGCTAATCATGATCATGCAGCTACTATTAAGTCTGAAGATTATACTGAGGAGGAGATCAGTTGTAAGAGCACTTCAACCTTCAAGGATGGTAGAGGTTCTTACAAGAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

159

Amino Acids

16.28

Weight (kDa)

4.33

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22570
fragaria_vesca	FvH4_6g09650 FvH4_6g09710 FvH4_6g09710 FvH4_6g09730 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09750 FvH4_6g09760
malus_domestica	MD04G1175500.v1.1 MD04G1175600.v1.1 MD12G1189200.v1.1 MD12G1189400.v1.1 MD12G1189600.v1.1 MD12G1189700.v1.1 MD12G1189900.v1.1
prunus_persica	Prupe.6G294900_v2.0.a1 Prupe.6G295000_v2.0.a1 Prupe.6G295100_v2.0.a1
pyrus_communis	pycom04g15480 pycom04g15490 pycom12g17650 pycom12g17690 pycom12g17700 pycom12g17730
rosa_chinensis	RchiOBHm_Chr3g0460351 RchiOBHm_Chr3g0460361
rosa_laevigata	RLG00000025018 RLG00000025019 RLG00000025027 RLG00000025113
rosa_multiflora	Rmu_sc0000449.1_g000005 Rmu_sc0004267.1_g000019
rosa_roxburghii	Rroxscaffold_6G00419560 Rroxscaffold_6G00419590
rosa_rugosa	Rorug03G0033500 Rorug03G0033500 Rorug03G0041400 Rorug03G0041800 Rorug03G0042000
rosa_samantha	Rh3AG100000 Rh3AG100100 Rh3BG094800 Rh3BG103900 Rh3BG104000 Rh3CG105700 Rh3CG105800 Rh3DG105300 Rh3DG105400
rosa_wichuraiana	Rw3G008480 Rw3G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	55, 145
AcuI	CTGAAG	2 cut(s)	165, 417
AfaI	GTAC	1 cut(s)	94
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	3 cut(s)	218, 438, 445
AluBI	AGCT	1 cut(s)	383
AluI	AGCT	1 cut(s)	383
Alw21I	GWGCWC	2 cut(s)	30, 434
AlwI	GGATC	2 cut(s)	55, 145
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	380
AsuHPI	GGTGA	1 cut(s)	137
BarI	GAAGNNNNNNTAC	2 cut(s)	418, 450
Bbv12I	GWGCWC	2 cut(s)	30, 434
BbvI	GCAGC	1 cut(s)	392
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	2 cut(s)	54, 111
BclI	TGATCA	2 cut(s)	190, 373
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
BmsI	GCATC	1 cut(s)	352
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	64
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	81
Bse8I	GATNNNNATC	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	2 cut(s)	367, 454
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	3 cut(s)	68, 425, 428
BseXI	GCAGC	1 cut(s)	392
BshFI	GGCC	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	30, 434
BslI	CCNNNNNNNGG	1 cut(s)	76
BsnI	GGCC	1 cut(s)	69
Bsp1286I	GDGCHC	2 cut(s)	30, 434
Bsp143I	GATC	5 cut(s)	60, 137, 190, 373, 417
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	400
BspHI	TCATGA	1 cut(s)	370
BspPI	GGATC	2 cut(s)	55, 145
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	5 cut(s)	60, 137, 190, 373, 417
BssT1I	CCWWGG	1 cut(s)	64
Bst4CI	ACNGT	4 cut(s)	23, 125, 266, 317
BstDEI	CTNAG	2 cut(s)	89, 408
BstF5I	GGATG	2 cut(s)	367, 454
BstKTI	GATC	5 cut(s)	63, 140, 193, 376, 420
BstMBI	GATC	5 cut(s)	60, 137, 190, 373, 417
BstV1I	GCAGC	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	367, 454
BtsIMutI	CAGTG	1 cut(s)	28
CciI	TCATGA	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	93
CviAII	CATG	2 cut(s)	371, 377
CviJI	RGCY	4 cut(s)	69, 98, 143, 383
CviKI_1	RGCY	4 cut(s)	69, 98, 143, 383
CviQI	GTAC	1 cut(s)	93
DdeI	CTNAG	2 cut(s)	89, 408
DpnI	GATC	5 cut(s)	62, 139, 192, 375, 419
DpnII	GATC	5 cut(s)	60, 137, 190, 373, 417
DraI	TTTAAA	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	64
Eco57I	CTGAAG	2 cut(s)	165, 417
EcoT14I	CCWWGG	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	2 cut(s)	374, 380
FaiI	YATR	4 cut(s)	50, 372, 378, 405
FatI	CATG	2 cut(s)	370, 376
FbaI	TGATCA	2 cut(s)	190, 373
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	2 cut(s)	374, 461
Fsp4HI	GCNGC	1 cut(s)	381
GluI	GCNGC	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	374, 380
HincII	GTYRAC	2 cut(s)	86, 121
HindII	GTYRAC	2 cut(s)	86, 121
HinfI	GANTC	2 cut(s)	185, 214
HpaI	GTTAAC	1 cut(s)	121
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	3 cut(s)	74, 86, 121
Hpy188I	TCNGA	4 cut(s)	19, 190, 208, 397
Hpy188III	TCNNGA	2 cut(s)	194, 371
Hpy8I	GTNNAC	3 cut(s)	74, 86, 121
HpyAV	CCTTC	4 cut(s)	140, 175, 451, 465
HpyCH4III	ACNGT	4 cut(s)	23, 125, 266, 317
HpyCH4V	TGCA	1 cut(s)	380
HpyF3I	CTNAG	2 cut(s)	89, 408
Hsp92II	CATG	2 cut(s)	374, 380
Ksp22I	TGATCA	2 cut(s)	190, 373
KspAI	GTTAAC	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	60, 137, 190, 373, 417
LpnPI	CCDG	4 cut(s)	62, 94, 179, 224
Lsp1109I	GCAGC	1 cut(s)	392
LweI	GCATC	1 cut(s)	352
MaeIII	GTNAC	2 cut(s)	260, 311
MalI	GATC	5 cut(s)	62, 139, 192, 375, 419
MboI	GATC	5 cut(s)	60, 137, 190, 373, 417
MboII	GAAGA	1 cut(s)	410
MhlI	GDGCHC	2 cut(s)	30, 434
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	6 cut(s)	36, 46, 127, 403, 406, 449
MseI	TTAA	4 cut(s)	120, 156, 173, 390
MslI	CAYNNNNRTG	1 cut(s)	375
NdeII	GATC	5 cut(s)	60, 137, 190, 373, 417
NlaIII	CATG	2 cut(s)	374, 380
NmuCI	GTSAC	2 cut(s)	260, 311
PagI	TCATGA	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	4 cut(s)	120, 156, 173, 390
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	5 cut(s)	60, 137, 190, 373, 417
SchI	GAGTC	1 cut(s)	194
SduI	GDGCHC	2 cut(s)	30, 434
SetI	ASST	6 cut(s)	113, 151, 385, 443, 460, 476
SfaNI	GCATC	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	4 cut(s)	23, 125, 266, 317
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	4 cut(s)	120, 156, 173, 390
Tru9I	TTAA	4 cut(s)	120, 156, 173, 390
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	2 cut(s)	260, 311
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	2 cut(s)	260, 311
TspRI	CASTG	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.