Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001288

Physical Location & Seq

Genomic Coordinates Reverse (-)

42062538 .. 42063809

Gene Structure 1272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025113

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAGTGTCCTAGGACTGAAAGTGTTTTCTCTTCGGAGAATCGGCAAAGGGCGATGGAAGAAGAGCTGGATCGAGGGGAGGAATTTGCGAATCAACTTCGCAAGTTTCTTGATGATCATGGTGATCATGGTCCATGGGTGGTGGCCCAAGCTCTTGGTACGAAGATCTCGAGCTCTTTTACGAATTCGAATAGCCTTTCAATCTTAAAAGGGAATCATCAGGGGGAGCTAGTTCCTCATATTATTCGAGCCAACACTACTTTTGCTGTGCCTACTACTGTAAATTCATCGTCTTGGAATGCACAGGAGGGACATAAGGCTATTATGAGTACCGAAACGTCCAAGGATCGTAGAGGTTGTTATAAGAGAAGAAAGACTCCATATTCATGGACCAGAAACACTCCAGATTTGGTTGACGATGGTCATGGATGGAGAAAGTATGGACAGAAACAGATCCTCAATGCCACCCACCCAAGGAACTACTTTAGGTGCACCCATAAGTACGGTCAAGGCTGCAGAGCAACCAAGCAGGTGCAGAAAGTTGAAGATTATCCCTCTCTGTTTCGGACTACATATTTTGGAAATCACACATGCACTTATCGCTTCCTCAAAGCTCCTGAATTCCTCCTGCAGGACGGTCTAAGTAGTACTCCTAGTCCTACAGAAGTCTGTAATTCAAAGTTTACTATTACATCTGACAACACAAACAACGGCCTCGCAAACCAACAAGTTCACCCTTTTTTCTCATCCAACATATCAACCAGAGAGGAGATGATCAACTCTAATCAAATAGCCACCAACCAATCATCAATATTTGATGATCTCGTGTCACTTGATCAACTGCCGGTGCTTGATTCATCTGGGGTCATCAGCAGGTTGCCATCAAGATTGTCTGAGCTTGATCACGAGGATACGACTTACAGGACAGTGACGGGTTATGTGTATCATGATGGTTTCTTCCCATATGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

325

Amino Acids

36.83

Weight (kDa)

6.64

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	139 - 198	3.2e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22570
fragaria_vesca	FvH4_6g09650 FvH4_6g09710 FvH4_6g09710 FvH4_6g09730 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09750 FvH4_6g09760
malus_domestica	MD04G1175500.v1.1 MD04G1175600.v1.1 MD12G1189200.v1.1 MD12G1189400.v1.1 MD12G1189600.v1.1 MD12G1189700.v1.1 MD12G1189900.v1.1
prunus_persica	Prupe.6G294900_v2.0.a1 Prupe.6G295000_v2.0.a1 Prupe.6G295100_v2.0.a1
pyrus_communis	pycom04g15480 pycom04g15490 pycom12g17650 pycom12g17690 pycom12g17700 pycom12g17730
rosa_chinensis	RchiOBHm_Chr3g0460351 RchiOBHm_Chr3g0460361
rosa_laevigata	RLG00000025018 RLG00000025019 RLG00000025027 RLG00000025113
rosa_multiflora	Rmu_sc0000449.1_g000005 Rmu_sc0004267.1_g000019
rosa_roxburghii	Rroxscaffold_6G00419560 Rroxscaffold_6G00419590
rosa_rugosa	Rorug03G0033500 Rorug03G0033500 Rorug03G0041400 Rorug03G0041800 Rorug03G0042000
rosa_samantha	Rh3AG100000 Rh3AG100100 Rh3BG094800 Rh3BG103900 Rh3BG104000 Rh3CG105700 Rh3CG105800 Rh3DG105300 Rh3DG105400
rosa_wichuraiana	Rw3G008480 Rw3G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AarI	CACCTGC	1 cut(s)	520
Acc36I	ACCTGC	2 cut(s)	520, 864
AclWI	GGATC	3 cut(s)	78, 354, 448
AcsI	RAATTY	5 cut(s)	83, 184, 283, 620, 969
AfaI	GTAC	4 cut(s)	160, 331, 503, 649
AfiI	CCNNNNNNNGG	2 cut(s)	474, 631
AgsI	TTSAA	3 cut(s)	201, 545, 678
AluBI	AGCT	6 cut(s)	67, 152, 174, 229, 614, 898
AluI	AGCT	6 cut(s)	67, 152, 174, 229, 614, 898
Alw21I	GWGCWC	2 cut(s)	176, 494
Alw44I	GTGCAC	1 cut(s)	490
AlwI	GGATC	3 cut(s)	78, 354, 448
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	2 cut(s)	144, 712
ApaLI	GTGCAC	1 cut(s)	490
ApeKI	GCWGC	1 cut(s)	513
ApoI	RAATTY	5 cut(s)	83, 184, 283, 620, 969
AspA2I	CCTAGG	1 cut(s)	11
AspS9I	GGNCC	3 cut(s)	131, 145, 390
AsuHPI	GGTGA	2 cut(s)	134, 725
AsuII	TTCGAA	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	169
AvaII	GGWCC	2 cut(s)	131, 390
AvrII	CCTAGG	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	176
BauI	CACGAG	2 cut(s)	824, 905
Bbv12I	GWGCWC	2 cut(s)	176, 494
BbvI	GCAGC	1 cut(s)	500
BccI	CCATC	5 cut(s)	49, 413, 423, 889, 944
BceAI	ACGGC	1 cut(s)	727
BciVI	GTATCC	1 cut(s)	904
BclI	TGATCA	5 cut(s)	115, 124, 774, 835, 901
BfaI	CTAG	3 cut(s)	12, 230, 654
BfmI	CTRYAG	3 cut(s)	514, 629, 660
BfuAI	ACCTGC	2 cut(s)	520, 864
BfuI	GTATCC	1 cut(s)	904
BglII	AGATCT	1 cut(s)	165
BisI	GCNGC	1 cut(s)	514
BlnI	CCTAGG	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	515
BmcAI	AGTACT	1 cut(s)	649
Bme18I	GGWCC	2 cut(s)	131, 390
BmeT110I	CYCGRG	1 cut(s)	169
BmgT120I	GGNCC	3 cut(s)	131, 145, 390
BoxI	GACNNNNGTC	1 cut(s)	420
BpmI	CTGGAG	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	188
BsaJI	CCNNGG	4 cut(s)	11, 134, 342, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	474, 631
Bse118I	RCCGGY	1 cut(s)	844
BseDI	CCNNGG	4 cut(s)	11, 134, 342, 473
BseGI	GGATG	2 cut(s)	434, 746
BseLI	CCNNNNNNNGG	2 cut(s)	474, 631
BseMII	CTCAG	1 cut(s)	885
BseRI	GAGGAG	1 cut(s)	782
BseSI	GKGCMC	1 cut(s)	494
BseXI	GCAGC	1 cut(s)	500
BsgI	GTGCAG	1 cut(s)	554
BshFI	GGCC	2 cut(s)	146, 714
BsiHKAI	GWGCWC	2 cut(s)	176, 494
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	845
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	2 cut(s)	474, 631
BsmFI	GGGAC	1 cut(s)	324
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	146, 714
BsoBI	CYCGRG	1 cut(s)	169
Bsp119I	TTCGAA	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	176, 494
Bsp19I	CCATGG	1 cut(s)	134
BspANI	GGCC	2 cut(s)	146, 714
BspCNI	CTCAG	1 cut(s)	886
BspHI	TCATGA	1 cut(s)	946
BspMAI	CTGCAG	2 cut(s)	518, 633
BspMI	ACCTGC	2 cut(s)	520, 864
BspPI	GGATC	3 cut(s)	78, 354, 448
BspQI	GCTCTTC	1 cut(s)	57
BspT104I	TTCGAA	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	844
BssAI	RCCGGY	1 cut(s)	844
BssECI	CCNNGG	4 cut(s)	11, 134, 342, 473
BssSI	CACGAG	2 cut(s)	824, 905
BssT1I	CCWWGG	4 cut(s)	11, 134, 342, 473
Bst2BI	CACGAG	2 cut(s)	824, 905
Bst4CI	ACNGT	4 cut(s)	280, 506, 638, 928
Bst6I	CTCTTC	2 cut(s)	37, 57
BstBI	TTCGAA	1 cut(s)	188
BstDEI	CTNAG	2 cut(s)	641, 894
BstDSI	CCRYGG	1 cut(s)	134
BstENI	CCTNNNNNAGG	1 cut(s)	629
BstF5I	GGATG	2 cut(s)	434, 746
BstMWI	GCNNNNNNNGC	1 cut(s)	600
BstNSI	RCATGY	1 cut(s)	594
BstPAI	GACNNNNGTC	1 cut(s)	420
BstSFI	CTRYAG	3 cut(s)	514, 629, 660
BstSLI	GKGCMC	1 cut(s)	494
BstV1I	GCAGC	1 cut(s)	500
BstX2I	RGATCY	2 cut(s)	165, 453
BstXI	CCANNNNNNTGG	2 cut(s)	155, 387
BstYI	RGATCY	2 cut(s)	165, 453
BsuI	GTATCC	1 cut(s)	904
BsuRI	GGCC	2 cut(s)	146, 714
BtgI	CCRYGG	1 cut(s)	134
BtgZI	GCGATG	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	434, 746
BtsIMutI	CAGTG	1 cut(s)	933
BveI	ACCTGC	2 cut(s)	520, 864
CciI	TCATGA	1 cut(s)	946
Cfr10I	RCCGGY	1 cut(s)	844
Cfr13I	GGNCC	3 cut(s)	131, 145, 390
Csp6I	GTAC	4 cut(s)	159, 330, 502, 648
CviAII	CATG	7 cut(s)	119, 128, 135, 387, 425, 591, 947
CviQI	GTAC	4 cut(s)	159, 330, 502, 648
DdeI	CTNAG	2 cut(s)	641, 894
Eam1104I	CTCTTC	2 cut(s)	37, 57
EarI	CTCTTC	2 cut(s)	37, 57
Ecl136II	GAGCTC	1 cut(s)	174
Eco130I	CCWWGG	4 cut(s)	11, 134, 342, 473
Eco24I	GRGCYC	1 cut(s)	176
Eco47I	GGWCC	2 cut(s)	131, 390
Eco53kI	GAGCTC	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	174
EcoNI	CCTNNNNNAGG	1 cut(s)	629
EcoRI	GAATTC	2 cut(s)	184, 620
EcoT14I	CCWWGG	4 cut(s)	11, 134, 342, 473
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	4 cut(s)	11, 134, 342, 473
FaeI	CATG	7 cut(s)	122, 131, 138, 390, 428, 594, 950
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	7 cut(s)	118, 127, 134, 386, 424, 590, 946
FauNDI	CATATG	1 cut(s)	964
FbaI	TGATCA	5 cut(s)	115, 124, 774, 835, 901
Fnu4HI	GCNGC	1 cut(s)	514
FokI	GGATG	2 cut(s)	441, 733
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	514
FspBI	CTAG	3 cut(s)	12, 230, 654
GluI	GCNGC	1 cut(s)	514
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	2 cut(s)	146, 714
HapII	CCGG	1 cut(s)	845
Hin1II	CATG	7 cut(s)	122, 131, 138, 390, 428, 594, 950
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	5 cut(s)	40, 91, 214, 376, 854
HpaII	CCGG	1 cut(s)	845
HphI	GGTGA	2 cut(s)	134, 725
Hpy166II	GTNNAC	4 cut(s)	415, 492, 684, 733
Hpy188I	TCNGA	4 cut(s)	37, 567, 697, 895
Hpy188III	TCNNGA	7 cut(s)	110, 169, 404, 617, 885, 905, 947
Hpy8I	GTNNAC	4 cut(s)	415, 492, 684, 733
HpyCH4III	ACNGT	4 cut(s)	280, 506, 638, 928
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	6 cut(s)	302, 492, 516, 535, 594, 631
HpyF10VI	GCNNNNNNNGC	1 cut(s)	600
HpyF3I	CTNAG	2 cut(s)	641, 894
HpySE526I	ACGT	1 cut(s)	338
Hsp92II	CATG	7 cut(s)	122, 131, 138, 390, 428, 594, 950
Ksp22I	TGATCA	5 cut(s)	115, 124, 774, 835, 901
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	2 cut(s)	226, 619
Lsp1109I	GCAGC	1 cut(s)	500
MaeI	CTAG	3 cut(s)	12, 230, 654
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	2 cut(s)	828, 928
MboII	GAAGA	7 cut(s)	24, 71, 74, 175, 381, 557, 949
MflI	RGATCY	2 cut(s)	165, 453
MhlI	GDGCHC	2 cut(s)	176, 494
MluCI	AATT	6 cut(s)	83, 184, 283, 620, 673, 969
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	1 cut(s)	774
MseI	TTAA	1 cut(s)	206
MslI	CAYNNNNRTG	1 cut(s)	385
MspI	CCGG	1 cut(s)	845
Mva1269I	GAATGC	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	600
NcoI	CCATGG	1 cut(s)	134
NdeI	CATATG	1 cut(s)	964
NlaIII	CATG	7 cut(s)	122, 131, 138, 390, 428, 594, 950
NmuCI	GTSAC	2 cut(s)	828, 928
NspI	RCATGY	1 cut(s)	594
NspV	TTCGAA	1 cut(s)	188
PaeR7I	CTCGAG	1 cut(s)	169
PagI	TCATGA	1 cut(s)	946
PaqCI	CACCTGC	1 cut(s)	520
PciSI	GCTCTTC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	4 cut(s)	40, 91, 214, 854
PkrI	GCNGC	1 cut(s)	515
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PshAI	GACNNNNGTC	1 cut(s)	420
PsiI	TTATAA	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	176
PspPI	GGNCC	3 cut(s)	131, 145, 390
PstI	CTGCAG	2 cut(s)	518, 633
PsuI	RGATCY	2 cut(s)	165, 453
RsaI	GTAC	4 cut(s)	160, 331, 503, 649
RsaNI	GTAC	4 cut(s)	159, 330, 502, 648
RseI	CAYNNNNRTG	1 cut(s)	385
SacI	GAGCTC	1 cut(s)	176
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	1 cut(s)	514
Sau96I	GGNCC	3 cut(s)	131, 145, 390
SbfI	CCTGCAGG	1 cut(s)	633
ScaI	AGTACT	1 cut(s)	649
SchI	GAGTC	1 cut(s)	370
SdaI	CCTGCAGG	1 cut(s)	633
SduI	GDGCHC	2 cut(s)	176, 494
SfcI	CTRYAG	3 cut(s)	514, 629, 660
Sfr274I	CTCGAG	1 cut(s)	169
SfuI	TTCGAA	1 cut(s)	188
SinI	GGWCC	2 cut(s)	131, 390
SlaI	CTCGAG	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	385
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse8387I	CCTGCAGG	1 cut(s)	633
Sse9I	AATT	6 cut(s)	83, 184, 283, 620, 673, 969
SspI	AATATT	1 cut(s)	813
SspMI	CTAG	3 cut(s)	12, 230, 654
SstI	GAGCTC	1 cut(s)	176
StyI	CCWWGG	4 cut(s)	11, 134, 342, 473
TaaI	ACNGT	4 cut(s)	280, 506, 638, 928
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	4 cut(s)	73, 170, 188, 247
TasI	AATT	6 cut(s)	83, 184, 283, 620, 673, 969
TatI	WGTACW	1 cut(s)	647
TfiI	GAWTC	4 cut(s)	40, 91, 214, 854
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	1 cut(s)	933
TseFI	GTSAC	2 cut(s)	828, 928
TseI	GCWGC	1 cut(s)	513
Tsp45I	GTSAC	2 cut(s)	828, 928
TspDTI	ATGAA	3 cut(s)	276, 375, 846
TspRI	CASTG	1 cut(s)	933
VneI	GTGCAC	1 cut(s)	490
VpaK11BI	GGWCC	2 cut(s)	131, 390
XagI	CCTNNNNNAGG	1 cut(s)	629
XapI	RAATTY	5 cut(s)	83, 184, 283, 620, 969
XceI	RCATGY	1 cut(s)	594
XhoI	CTCGAG	1 cut(s)	169
XmaJI	CCTAGG	1 cut(s)	11
XspI	CTAG	3 cut(s)	12, 230, 654
ZrmI	AGTACT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.