Rh3AG100100
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
8345268 .. 8347302
2035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG100100.1

Sequence Viewer

Length: 984 bp
ATGGAGTGGACTTGGCCGGAGAGTGTGTCGTCGAACCGGCAGAGGGTCGTGGAGGAGTTGGTTCAAGGCCGGGAGATGGTGAATCAGCTTCGGAGGTGTCTCAGTGGTGACGTCAGATCGGCGGAGGGTCTTGTTACGAAGATCTTGGGGTCGTTCACAAACACCCTTCGCATCTTGAATGGGAGTGAAGAGGCTAAAGAGGAGCTCATCTCTCAGATTCAAGCCAATAGTCCTACTAGTACTGTTACTGCTTCTGGTTCTGGTTCTGCTGCTGCTGGTACCGATTCATTGTCTTGGGATGCTCTTGATGATGCTGTTAAGTCCGAGGATTCGAATGAAGAGAGTTACAAGAGTACCGAAAAGTTCAAGGATCGGAGAGGTTCATACAAGAGAAGAAAAACTTCACATTCATGGACCAAAGACACTCTGGATTTAGTGGACGATGGCCATGCATGGAGGAAGTACGGACAAAAGATGATCCTGAATACCAGACATCCAAGGAACTACTTCAGGTGCACTCATAAGTTTGATCAAGGCTGCAAAGCGACCAAACATGTGCAGAGGATTAAAGATGAACCCCAACTCTTTCGGACCACATACTATGGCAATCACACATGCACTGACTATCTCAGAGCTCCTGAGCTCATCTTAGATTCTTCAAGTTCTCAAGACTCTTCCAAGAATATGATCAGATTCGACAACACCAACAACGACTTCACCCGCAAACAAGAACACCCCTTTTTCTCATCCTTCACATTGATCGAAAAAGAGAGCGTCAAGGAAGAAGAGATGATCACACCAATTAATGATCATGATCATGTGATTCACCACAACCAACAATTGTCGTCGTGTGACTATCTCATGTCGCCTGGTCTAGGAGTGTTTGAGTCGTCCGCATCGACTATCGCATATGATCACGAGGATGTGATTTCTAGGATAATGGTGGGATACTTCGATGATGAAGTAGATTTAATTTCCATATGA

Protein Analysis

327

Amino Acids

37.34

Weight (kDa)

5.58

Isoelectric Point (pI)

53.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 147 - 206 1.6e-24 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 114
Acc65I GGTACC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 278
AciI CCGC 3 cut(s) 122, 721, 894
AclWI GGATC 2 cut(s) 378, 472
AcoI YGGCCR 2 cut(s) 14, 445
AcuI CTGAAG 1 cut(s) 493
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 4 cut(s) 241, 280, 355, 464
AfiI CCNNNNNNNGG 3 cut(s) 43, 76, 875
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 5 cut(s) 65, 178, 221, 367, 660
AhlI ACTAGT 1 cut(s) 236
AjnI CCWGG 1 cut(s) 868
AjuI GAANNNNNNNTTGG 2 cut(s) 698, 730
AluBI AGCT 4 cut(s) 88, 205, 635, 643
AluI AGCT 4 cut(s) 88, 205, 635, 643
Alw21I GWGCWC 4 cut(s) 207, 518, 637, 645
Alw26I GTCTC 1 cut(s) 104
Alw44I GTGCAC 1 cut(s) 514
AlwI GGATC 2 cut(s) 378, 472
AoxI GGCC 3 cut(s) 14, 67, 445
ApaLI GTGCAC 1 cut(s) 514
ApeKI GCWGC 3 cut(s) 269, 272, 537
AseI ATTAAT 1 cut(s) 804
Asp700I GAANNNNTTC 2 cut(s) 400, 506
Asp718I GGTACC 1 cut(s) 278
AspS9I GGNCC 2 cut(s) 414, 591
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 4 cut(s) 91, 119, 709, 818
AsuII TTCGAA 1 cut(s) 332
AvaII GGWCC 2 cut(s) 414, 591
BaeGI GKGCMC 1 cut(s) 518
BaeI ACNNNNGTAYC 2 cut(s) 337, 370
BalI TGGCCA 1 cut(s) 447
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 3 cut(s) 207, 637, 645
BauI CACGAG 1 cut(s) 917
Bbv12I GWGCWC 4 cut(s) 207, 518, 637, 645
BbvI GCAGC 3 cut(s) 256, 259, 524
BccI CCATC 2 cut(s) 70, 437
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciT130I CCWGG 1 cut(s) 870
BciVI GTATCC 1 cut(s) 941
BclI TGATCA 6 cut(s) 529, 687, 792, 808, 814, 913
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 104
BcuI ACTAGT 1 cut(s) 236
BfaI CTAG 3 cut(s) 237, 875, 933
BfuI GTATCC 1 cut(s) 941
BglII AGATCT 1 cut(s) 141
BisI GCNGC 3 cut(s) 270, 273, 538
BlsI GCNGC 3 cut(s) 271, 274, 539
BmcAI AGTACT 1 cut(s) 241
Bme1390I CCNGG 2 cut(s) 71, 870
Bme18I GGWCC 2 cut(s) 414, 591
BmgT120I GGNCC 2 cut(s) 414, 591
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 2 cut(s) 71, 870
BmsI GCATC 4 cut(s) 180, 289, 301, 905
BplI GAGNNNNNCTC 2 cut(s) 194, 226
Bpu10I CCTNAGC 1 cut(s) 639
Bpu14I TTCGAA 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 651
BpuMI CCSGG 1 cut(s) 71
BsaBI GATNNNNATC 1 cut(s) 813
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 324, 497
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 76, 875
Bse118I RCCGGY 1 cut(s) 36
Bse8I GATNNNNATC 1 cut(s) 813
BseBI CCWGG 1 cut(s) 870
BseDI CCNNGG 2 cut(s) 324, 497
BseGI GGATG 4 cut(s) 304, 493, 746, 928
BseJI GATNNNNATC 1 cut(s) 813
BseLI CCNNNNNNNGG 3 cut(s) 43, 76, 875
BseMII CTCAG 4 cut(s) 115, 227, 630, 643
BseRI GAGGAG 2 cut(s) 68, 215
BseSI GKGCMC 1 cut(s) 518
BseXI GCAGC 3 cut(s) 256, 259, 524
BsgI GTGCAG 1 cut(s) 578
BshFI GGCC 3 cut(s) 16, 69, 447
BshNI GGYRCC 1 cut(s) 278
BsiHKAI GWGCWC 4 cut(s) 207, 518, 637, 645
BsiSI CCGG 3 cut(s) 17, 37, 70
BslI CCNNNNNNNGG 3 cut(s) 43, 76, 875
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 3 cut(s) 16, 69, 447
Bsp119I TTCGAA 1 cut(s) 332
Bsp1286I GDGCHC 4 cut(s) 207, 518, 637, 645
BspACI CCGC 3 cut(s) 122, 721, 894
BspANI GGCC 3 cut(s) 16, 69, 447
BspCNI CTCAG 4 cut(s) 114, 226, 631, 642
BspHI TCATGA 1 cut(s) 811
BspLI GGNNCC 1 cut(s) 280
BspPI GGATC 2 cut(s) 378, 472
BspT104I TTCGAA 1 cut(s) 332
BspT107I GGYRCC 1 cut(s) 278
BsrFI RCCGGY 1 cut(s) 36
BssAI RCCGGY 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 324, 497
BssNI GRCGYC 1 cut(s) 111
BssSI CACGAG 1 cut(s) 917
BssT1I CCWWGG 1 cut(s) 497
Bst2BI CACGAG 1 cut(s) 917
Bst2UI CCWGG 1 cut(s) 870
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 4 cut(s) 183, 333, 679, 780
BstACI GRCGYC 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 332
BstDEI CTNAG 5 cut(s) 101, 213, 629, 639, 649
BstENI CCTNNNNNAGG 1 cut(s) 873
BstF5I GGATG 4 cut(s) 304, 493, 746, 928
BstMAI GTCTC 1 cut(s) 104
BstNI CCWGG 1 cut(s) 870
BstNSI RCATGY 2 cut(s) 557, 618
BstSCI CCNGG 2 cut(s) 69, 868
BstSLI GKGCMC 1 cut(s) 518
BstV1I GCAGC 3 cut(s) 256, 259, 524
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BsuI GTATCC 1 cut(s) 941
BsuRI GGCC 3 cut(s) 16, 69, 447
BtsCI GGATG 4 cut(s) 304, 493, 746, 928
BtsIMutI CAGTG 2 cut(s) 109, 618
CciI TCATGA 1 cut(s) 811
Cfr10I RCCGGY 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 414, 591
CseI GACGC 1 cut(s) 763
Csp6I GTAC 4 cut(s) 240, 279, 354, 463
CviAII CATG 8 cut(s) 411, 449, 453, 554, 615, 812, 818, 862
CviQI GTAC 4 cut(s) 240, 279, 354, 463
DdeI CTNAG 5 cut(s) 101, 213, 629, 639, 649
EaeI YGGCCR 2 cut(s) 14, 445
Eam1104I CTCTTC 4 cut(s) 183, 333, 679, 780
EarI CTCTTC 4 cut(s) 183, 333, 679, 780
EciI GGCGGA 1 cut(s) 137
Ecl136II GAGCTC 3 cut(s) 205, 635, 643
Eco130I CCWWGG 1 cut(s) 497
Eco24I GRGCYC 3 cut(s) 207, 637, 645
Eco47I GGWCC 2 cut(s) 414, 591
Eco53kI GAGCTC 3 cut(s) 205, 635, 643
Eco57I CTGAAG 1 cut(s) 493
EcoICRI GAGCTC 3 cut(s) 205, 635, 643
EcoNI CCTNNNNNAGG 1 cut(s) 873
EcoRII CCWGG 1 cut(s) 868
EcoT14I CCWWGG 1 cut(s) 497
EcoT22I ATGCAT 1 cut(s) 454
EcoT38I GRGCYC 3 cut(s) 207, 637, 645
ErhI CCWWGG 1 cut(s) 497
FaeI CATG 8 cut(s) 414, 452, 456, 557, 618, 815, 821, 865
FalI AAGNNNNNCTT 2 cut(s) 385, 417
FatI CATG 8 cut(s) 410, 448, 452, 553, 614, 811, 817, 861
FauI CCCGC 1 cut(s) 728
FauNDI CATATG 2 cut(s) 910, 980
FbaI TGATCA 6 cut(s) 529, 687, 792, 808, 814, 913
Fnu4HI GCNGC 3 cut(s) 270, 273, 538
FokI GGATG 4 cut(s) 311, 480, 733, 935
FriOI GRGCYC 3 cut(s) 207, 637, 645
Fsp4HI GCNGC 3 cut(s) 270, 273, 538
FspBI CTAG 3 cut(s) 237, 875, 933
GluI GCNGC 3 cut(s) 270, 273, 538
HaeIII GGCC 3 cut(s) 16, 69, 447
HapII CCGG 3 cut(s) 17, 37, 70
HgaI GACGC 1 cut(s) 763
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 8 cut(s) 414, 452, 456, 557, 618, 815, 821, 865
HinfI GANTC 9 cut(s) 82, 217, 284, 329, 653, 671, 693, 823, 887
HpaII CCGG 3 cut(s) 17, 37, 70
HphI GGTGA 4 cut(s) 91, 119, 709, 818
Hpy166II GTNNAC 4 cut(s) 9, 156, 439, 516
Hpy188I TCNGA 8 cut(s) 93, 116, 216, 325, 375, 591, 632, 692
Hpy188III TCNNGA 8 cut(s) 175, 305, 428, 481, 638, 668, 812, 917
Hpy8I GTNNAC 4 cut(s) 9, 156, 439, 516
Hpy99I CGWCG 2 cut(s) 34, 850
HpyAV CCTTC 2 cut(s) 176, 760
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 5 cut(s) 452, 516, 540, 559, 618
HpyF3I CTNAG 5 cut(s) 101, 213, 629, 639, 649
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 8 cut(s) 414, 452, 456, 557, 618, 815, 821, 865
KpnI GGTACC 1 cut(s) 282
Ksp22I TGATCA 6 cut(s) 529, 687, 792, 808, 814, 913
LmnI GCTCC 2 cut(s) 202, 640
Lsp1109I GCAGC 3 cut(s) 256, 259, 524
LweI GCATC 4 cut(s) 180, 289, 301, 905
MaeI CTAG 3 cut(s) 237, 875, 933
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 5 cut(s) 107, 133, 244, 344, 851
MboII GAAGA 8 cut(s) 151, 200, 350, 405, 648, 666, 794, 797
MfeI CAATTG 1 cut(s) 839
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 4 cut(s) 207, 518, 637, 645
MlsI TGGCCA 1 cut(s) 447
MluCI AATT 3 cut(s) 801, 839, 972
MluNI TGGCCA 1 cut(s) 447
MlyI GAGTC 2 cut(s) 665, 896
Mox20I TGGCCA 1 cut(s) 447
Mph1103I ATGCAT 1 cut(s) 454
MroXI GAANNNNTTC 2 cut(s) 400, 506
MscI TGGCCA 1 cut(s) 447
MseI TTAA 4 cut(s) 318, 567, 804, 971
MslI CAYNNNNRTG 3 cut(s) 409, 816, 921
Msp20I TGGCCA 1 cut(s) 447
MspI CCGG 3 cut(s) 17, 37, 70
MspR9I CCNGG 2 cut(s) 71, 870
MunI CAATTG 1 cut(s) 839
MvaI CCWGG 1 cut(s) 870
NciI CCSGG 1 cut(s) 71
NdeI CATATG 2 cut(s) 910, 980
NlaIII CATG 8 cut(s) 414, 452, 456, 557, 618, 815, 821, 865
NlaIV GGNNCC 1 cut(s) 280
NmuCI GTSAC 2 cut(s) 107, 851
NsiI ATGCAT 1 cut(s) 454
NspI RCATGY 2 cut(s) 557, 618
NspV TTCGAA 1 cut(s) 332
PagI TCATGA 1 cut(s) 811
PciI ACATGT 1 cut(s) 553
PcsI WCGNNNNNNNCGW 1 cut(s) 896
PdmI GAANNNNTTC 2 cut(s) 400, 506
PfeI GAWTC 7 cut(s) 82, 217, 284, 329, 653, 693, 823
PkrI GCNGC 3 cut(s) 271, 274, 539
PleI GAGTC 2 cut(s) 665, 895
PpsI GAGTC 2 cut(s) 665, 895
PscI ACATGT 1 cut(s) 553
PshBI ATTAAT 1 cut(s) 804
Psp124BI GAGCTC 3 cut(s) 207, 637, 645
Psp6I CCWGG 1 cut(s) 868
PspGI CCWGG 1 cut(s) 868
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 2 cut(s) 414, 591
PsuI RGATCY 1 cut(s) 141
RsaI GTAC 4 cut(s) 241, 280, 355, 464
RsaNI GTAC 4 cut(s) 240, 279, 354, 463
RseI CAYNNNNRTG 3 cut(s) 409, 816, 921
SacI GAGCTC 3 cut(s) 207, 637, 645
SaqAI TTAA 4 cut(s) 318, 567, 804, 971
SatI GCNGC 3 cut(s) 270, 273, 538
Sau96I GGNCC 2 cut(s) 414, 591
ScaI AGTACT 1 cut(s) 241
SchI GAGTC 2 cut(s) 665, 896
ScrFI CCNGG 2 cut(s) 71, 870
SduI GDGCHC 4 cut(s) 207, 518, 637, 645
SetI ASST 8 cut(s) 90, 98, 114, 207, 382, 515, 637, 645
SfaNI GCATC 4 cut(s) 180, 289, 301, 905
SfuI TTCGAA 1 cut(s) 332
SinI GGWCC 2 cut(s) 414, 591
SmiMI CAYNNNNRTG 3 cut(s) 409, 816, 921
SmlI CTYRAG 1 cut(s) 666
SmoI CTYRAG 1 cut(s) 666
SpeI ACTAGT 1 cut(s) 236
Sse9I AATT 3 cut(s) 801, 839, 972
SsiI CCGC 3 cut(s) 122, 721, 894
SspMI CTAG 3 cut(s) 237, 875, 933
SstI GAGCTC 3 cut(s) 207, 637, 645
StyD4I CCNGG 2 cut(s) 69, 868
StyI CCWWGG 1 cut(s) 497
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 114
TaqI TCGA 6 cut(s) 32, 332, 696, 762, 899, 954
TasI AATT 3 cut(s) 801, 839, 972
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 7 cut(s) 82, 217, 284, 329, 653, 693, 823
Tru1I TTAA 4 cut(s) 318, 567, 804, 971
Tru9I TTAA 4 cut(s) 318, 567, 804, 971
TscAI CASTG 2 cut(s) 109, 625
TseFI GTSAC 2 cut(s) 107, 851
TseI GCWGC 3 cut(s) 269, 272, 537
Tsp45I GTSAC 2 cut(s) 107, 851
TspDTI ATGAA 6 cut(s) 276, 351, 372, 399, 588, 975
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 2 cut(s) 109, 625
VneI GTGCAC 1 cut(s) 514
VpaK11BI GGWCC 2 cut(s) 414, 591
VspI ATTAAT 1 cut(s) 804
XagI CCTNNNNNAGG 1 cut(s) 873
XceI RCATGY 2 cut(s) 557, 618
XcmI CCANNNNNNNNNTGG 1 cut(s) 424
XmnI GAANNNNTTC 2 cut(s) 400, 506
XspI CTAG 3 cut(s) 237, 875, 933
ZraI GACGTC 1 cut(s) 112
ZrmI AGTACT 1 cut(s) 241
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.