Rmu_sc0004267.1_g000019
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004267.1
Physical Location & Seq
Reverse (-)
91246 .. 92845
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004267.1_g000019.1.cds

Sequence Viewer

Length: 978 bp
atggagtggacttggccggagagtgtgtcgtcgaaccggcagagggtcgtggaggagttggttcaaggccgggagatggtgaatcagcttcagaggtgtcttcgtggtgacgtcagatcggcggagggtcttgttacgaagatcttggggtcgttcacaaacacccttcgtatcttgaatgggagtgaagaggctaaagaggagctcatctctcagattcaagccaatagtcctactagtactgttactgcttctggttctgctgctgctggtaccgattcattgtcttgggatgctcttgatgatgctggtaagtccgaggattcgaatgaagagagttacaagagtaccgaaacgttcaaggatcgcagaggttcatacaagagaagaaaaacttcacattcatggaccaaagacactctggatttagtggacgatggccatgcatggaggaagtacggacaaaagatgatcctgaataccagacatccaaggaactacttcaggtgcactcataagtttgatcaaggctgcaaagcaaccaaacatgtgcagaggattaaagatgaaccccaactctttcggaccacatactatggcaatcacacatgcactgactatctcagagctcctgagctcatcttagattcttcaagttctcaagactcttccaagaatatgatcagattcgacaacaccaacaacgacttcacccgcaaacaagaacatccctttttctcatccttcacatcgatcaaaaaagagagcgtcaaggaagaagagatgatcacaccaattaatgatcatgatcatgtgattcaccacaaccaacaattgtcgtcgtgtgactatctcatgtcgcctggtctaggagtgtttgagtcgtccgcatcgactatcgcatatgatcacgaggatgtgttttctaggataatggtgggatgcttcgatgatgaagtagattttccatatatatga

Protein Analysis

325

Amino Acids

37.21

Weight (kDa)

5.67

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 114
Acc65I GGTACC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 272
AciI CCGC 3 cut(s) 122, 715, 888
AclI AACGTT 1 cut(s) 356
AclWI GGATC 2 cut(s) 372, 466
AcoI YGGCCR 2 cut(s) 14, 439
AcuI CTGAAG 2 cut(s) 74, 487
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 4 cut(s) 241, 274, 349, 458
AfiI CCNNNNNNNGG 3 cut(s) 43, 76, 869
AflIII ACRYGT 1 cut(s) 547
AgsI TTSAA 5 cut(s) 65, 178, 221, 361, 654
AhlI ACTAGT 1 cut(s) 236
AjnI CCWGG 1 cut(s) 862
AjuI GAANNNNNNNTTGG 2 cut(s) 692, 724
AluBI AGCT 4 cut(s) 88, 205, 629, 637
AluI AGCT 4 cut(s) 88, 205, 629, 637
Alw21I GWGCWC 4 cut(s) 207, 512, 631, 639
Alw44I GTGCAC 1 cut(s) 508
AlwI GGATC 2 cut(s) 372, 466
AoxI GGCC 3 cut(s) 14, 67, 439
ApaLI GTGCAC 1 cut(s) 508
ApeKI GCWGC 3 cut(s) 263, 266, 531
AseI ATTAAT 1 cut(s) 798
Asp700I GAANNNNTTC 2 cut(s) 394, 500
Asp718I GGTACC 1 cut(s) 272
AspS9I GGNCC 2 cut(s) 408, 585
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 4 cut(s) 91, 119, 703, 812
AsuII TTCGAA 1 cut(s) 326
AvaII GGWCC 2 cut(s) 408, 585
BaeGI GKGCMC 1 cut(s) 512
BaeI ACNNNNGTAYC 2 cut(s) 331, 364
BalI TGGCCA 1 cut(s) 441
BanI GGYRCC 1 cut(s) 272
BanII GRGCYC 3 cut(s) 207, 631, 639
BauI CACGAG 1 cut(s) 911
BbsI GAAGAC 1 cut(s) 92
Bbv12I GWGCWC 4 cut(s) 207, 512, 631, 639
BbvI GCAGC 3 cut(s) 250, 253, 518
BccI CCATC 2 cut(s) 70, 431
BcgI CGANNNNNNTGC 2 cut(s) 425, 459
BciT130I CCWGG 1 cut(s) 864
BclI TGATCA 6 cut(s) 523, 681, 786, 802, 808, 907
BcnI CCSGG 1 cut(s) 71
BcuI ACTAGT 1 cut(s) 236
BfaI CTAG 3 cut(s) 237, 869, 927
BglII AGATCT 1 cut(s) 141
BisI GCNGC 3 cut(s) 264, 267, 532
BlsI GCNGC 3 cut(s) 265, 268, 533
BmcAI AGTACT 1 cut(s) 241
Bme1390I CCNGG 2 cut(s) 71, 864
Bme18I GGWCC 2 cut(s) 408, 585
BmgT120I GGNCC 2 cut(s) 408, 585
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 2 cut(s) 71, 864
BmsI GCATC 4 cut(s) 283, 295, 899, 932
BpiI GAAGAC 1 cut(s) 92
BplI GAGNNNNNCTC 2 cut(s) 194, 226
Bpu10I CCTNAGC 1 cut(s) 633
Bpu14I TTCGAA 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 645
BpuMI CCSGG 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 752
BsaBI GATNNNNATC 1 cut(s) 807
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 318, 491
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 76, 869
Bse118I RCCGGY 1 cut(s) 36
Bse8I GATNNNNATC 1 cut(s) 807
BseBI CCWGG 1 cut(s) 864
BseCI ATCGAT 1 cut(s) 752
BseDI CCNNGG 2 cut(s) 318, 491
BseGI GGATG 6 cut(s) 298, 487, 727, 740, 922, 947
BseJI GATNNNNATC 1 cut(s) 807
BseLI CCNNNNNNNGG 3 cut(s) 43, 76, 869
BseMII CTCAG 3 cut(s) 227, 624, 637
BseRI GAGGAG 2 cut(s) 68, 215
BseSI GKGCMC 1 cut(s) 512
BseXI GCAGC 3 cut(s) 250, 253, 518
BsgI GTGCAG 1 cut(s) 572
BshFI GGCC 3 cut(s) 16, 69, 441
BshNI GGYRCC 1 cut(s) 272
BshVI ATCGAT 1 cut(s) 752
BsiHKAI GWGCWC 4 cut(s) 207, 512, 631, 639
BsiSI CCGG 3 cut(s) 17, 37, 70
BslI CCNNNNNNNGG 3 cut(s) 43, 76, 869
BsnI GGCC 3 cut(s) 16, 69, 441
Bsp119I TTCGAA 1 cut(s) 326
Bsp1286I GDGCHC 4 cut(s) 207, 512, 631, 639
BspACI CCGC 3 cut(s) 122, 715, 888
BspANI GGCC 3 cut(s) 16, 69, 441
BspCNI CTCAG 3 cut(s) 226, 625, 636
BspDI ATCGAT 1 cut(s) 752
BspHI TCATGA 1 cut(s) 805
BspLI GGNNCC 1 cut(s) 274
BspPI GGATC 2 cut(s) 372, 466
BspT104I TTCGAA 1 cut(s) 326
BspT107I GGYRCC 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 36
BssAI RCCGGY 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 318, 491
BssNI GRCGYC 1 cut(s) 111
BssSI CACGAG 1 cut(s) 911
BssT1I CCWWGG 1 cut(s) 491
Bst2BI CACGAG 1 cut(s) 911
Bst2UI CCWGG 1 cut(s) 864
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 4 cut(s) 183, 327, 673, 774
BstACI GRCGYC 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 326
BstDEI CTNAG 4 cut(s) 213, 623, 633, 643
BstENI CCTNNNNNAGG 1 cut(s) 867
BstF5I GGATG 6 cut(s) 298, 487, 727, 740, 922, 947
BstNI CCWGG 1 cut(s) 864
BstNSI RCATGY 2 cut(s) 551, 612
BstSCI CCNGG 2 cut(s) 69, 862
BstSLI GKGCMC 1 cut(s) 512
BstV1I GCAGC 3 cut(s) 250, 253, 518
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
Bsu15I ATCGAT 1 cut(s) 752
BsuRI GGCC 3 cut(s) 16, 69, 441
BsuTUI ATCGAT 1 cut(s) 752
BtsCI GGATG 6 cut(s) 298, 487, 727, 740, 922, 947
BtsIMutI CAGTG 1 cut(s) 612
CciI TCATGA 1 cut(s) 805
Cfr10I RCCGGY 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 408, 585
ClaI ATCGAT 1 cut(s) 752
CseI GACGC 1 cut(s) 757
Csp6I GTAC 4 cut(s) 240, 273, 348, 457
CviAII CATG 8 cut(s) 405, 443, 447, 548, 609, 806, 812, 856
CviQI GTAC 4 cut(s) 240, 273, 348, 457
DdeI CTNAG 4 cut(s) 213, 623, 633, 643
EaeI YGGCCR 2 cut(s) 14, 439
Eam1104I CTCTTC 4 cut(s) 183, 327, 673, 774
EarI CTCTTC 4 cut(s) 183, 327, 673, 774
EciI GGCGGA 1 cut(s) 137
Ecl136II GAGCTC 3 cut(s) 205, 629, 637
Eco130I CCWWGG 1 cut(s) 491
Eco24I GRGCYC 3 cut(s) 207, 631, 639
Eco47I GGWCC 2 cut(s) 408, 585
Eco53kI GAGCTC 3 cut(s) 205, 629, 637
Eco57I CTGAAG 2 cut(s) 74, 487
EcoICRI GAGCTC 3 cut(s) 205, 629, 637
EcoNI CCTNNNNNAGG 1 cut(s) 867
EcoRII CCWGG 1 cut(s) 862
EcoT14I CCWWGG 1 cut(s) 491
EcoT22I ATGCAT 1 cut(s) 448
EcoT38I GRGCYC 3 cut(s) 207, 631, 639
ErhI CCWWGG 1 cut(s) 491
FaeI CATG 8 cut(s) 408, 446, 450, 551, 612, 809, 815, 859
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FatI CATG 8 cut(s) 404, 442, 446, 547, 608, 805, 811, 855
FauI CCCGC 1 cut(s) 722
FauNDI CATATG 1 cut(s) 904
FbaI TGATCA 6 cut(s) 523, 681, 786, 802, 808, 907
Fnu4HI GCNGC 3 cut(s) 264, 267, 532
FokI GGATG 6 cut(s) 305, 474, 714, 727, 929, 954
FriOI GRGCYC 3 cut(s) 207, 631, 639
Fsp4HI GCNGC 3 cut(s) 264, 267, 532
FspBI CTAG 3 cut(s) 237, 869, 927
GluI GCNGC 3 cut(s) 264, 267, 532
HaeIII GGCC 3 cut(s) 16, 69, 441
HapII CCGG 3 cut(s) 17, 37, 70
HgaI GACGC 1 cut(s) 757
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 8 cut(s) 408, 446, 450, 551, 612, 809, 815, 859
HinfI GANTC 9 cut(s) 82, 217, 278, 323, 647, 665, 687, 817, 881
HpaII CCGG 3 cut(s) 17, 37, 70
HphI GGTGA 4 cut(s) 91, 119, 703, 812
Hpy166II GTNNAC 4 cut(s) 9, 156, 433, 510
Hpy188I TCNGA 7 cut(s) 93, 116, 216, 319, 585, 626, 686
Hpy188III TCNNGA 8 cut(s) 175, 299, 422, 475, 632, 662, 806, 911
Hpy8I GTNNAC 4 cut(s) 9, 156, 433, 510
Hpy99I CGWCG 2 cut(s) 34, 844
HpyAV CCTTC 2 cut(s) 176, 754
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 2 cut(s) 111, 356
HpyCH4V TGCA 5 cut(s) 446, 510, 534, 553, 612
HpyF3I CTNAG 4 cut(s) 213, 623, 633, 643
HpySE526I ACGT 2 cut(s) 111, 356
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 8 cut(s) 408, 446, 450, 551, 612, 809, 815, 859
KpnI GGTACC 1 cut(s) 276
Ksp22I TGATCA 6 cut(s) 523, 681, 786, 802, 808, 907
LmnI GCTCC 2 cut(s) 202, 634
Lsp1109I GCAGC 3 cut(s) 250, 253, 518
LweI GCATC 4 cut(s) 283, 295, 899, 932
MaeI CTAG 3 cut(s) 237, 869, 927
MaeII ACGT 2 cut(s) 111, 356
MaeIII GTNAC 5 cut(s) 107, 133, 244, 338, 845
MboII GAAGA 9 cut(s) 92, 151, 200, 344, 399, 642, 660, 788, 791
MfeI CAATTG 1 cut(s) 833
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 4 cut(s) 207, 512, 631, 639
MlsI TGGCCA 1 cut(s) 441
MluCI AATT 2 cut(s) 795, 833
MluNI TGGCCA 1 cut(s) 441
MlyI GAGTC 2 cut(s) 659, 890
Mox20I TGGCCA 1 cut(s) 441
Mph1103I ATGCAT 1 cut(s) 448
MroXI GAANNNNTTC 2 cut(s) 394, 500
MscI TGGCCA 1 cut(s) 441
MseI TTAA 2 cut(s) 561, 798
MslI CAYNNNNRTG 4 cut(s) 403, 810, 915, 973
Msp20I TGGCCA 1 cut(s) 441
MspI CCGG 3 cut(s) 17, 37, 70
MspR9I CCNGG 2 cut(s) 71, 864
MunI CAATTG 1 cut(s) 833
MvaI CCWGG 1 cut(s) 864
NciI CCSGG 1 cut(s) 71
NdeI CATATG 1 cut(s) 904
NlaIII CATG 8 cut(s) 408, 446, 450, 551, 612, 809, 815, 859
NlaIV GGNNCC 1 cut(s) 274
NmuCI GTSAC 2 cut(s) 107, 845
NsiI ATGCAT 1 cut(s) 448
NspI RCATGY 2 cut(s) 551, 612
NspV TTCGAA 1 cut(s) 326
PagI TCATGA 1 cut(s) 805
PciI ACATGT 1 cut(s) 547
PcsI WCGNNNNNNNCGW 1 cut(s) 890
PdmI GAANNNNTTC 2 cut(s) 394, 500
PfeI GAWTC 7 cut(s) 82, 217, 278, 323, 647, 687, 817
PkrI GCNGC 3 cut(s) 265, 268, 533
PleI GAGTC 2 cut(s) 659, 889
PpsI GAGTC 2 cut(s) 659, 889
PscI ACATGT 1 cut(s) 547
PshBI ATTAAT 1 cut(s) 798
Psp124BI GAGCTC 3 cut(s) 207, 631, 639
Psp1406I AACGTT 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 862
PspGI CCWGG 1 cut(s) 862
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 2 cut(s) 408, 585
PsuI RGATCY 1 cut(s) 141
RsaI GTAC 4 cut(s) 241, 274, 349, 458
RsaNI GTAC 4 cut(s) 240, 273, 348, 457
RseI CAYNNNNRTG 4 cut(s) 403, 810, 915, 973
SacI GAGCTC 3 cut(s) 207, 631, 639
SaqAI TTAA 2 cut(s) 561, 798
SatI GCNGC 3 cut(s) 264, 267, 532
Sau96I GGNCC 2 cut(s) 408, 585
ScaI AGTACT 1 cut(s) 241
SchI GAGTC 2 cut(s) 659, 890
ScrFI CCNGG 2 cut(s) 71, 864
SduI GDGCHC 4 cut(s) 207, 512, 631, 639
SetI ASST 9 cut(s) 90, 98, 114, 207, 359, 376, 509, 631, 639
SfaNI GCATC 4 cut(s) 283, 295, 899, 932
SfuI TTCGAA 1 cut(s) 326
SinI GGWCC 2 cut(s) 408, 585
SmiMI CAYNNNNRTG 4 cut(s) 403, 810, 915, 973
SmlI CTYRAG 1 cut(s) 660
SmoI CTYRAG 1 cut(s) 660
SpeI ACTAGT 1 cut(s) 236
Sse9I AATT 2 cut(s) 795, 833
SsiI CCGC 3 cut(s) 122, 715, 888
SspMI CTAG 3 cut(s) 237, 869, 927
SstI GAGCTC 3 cut(s) 207, 631, 639
StyD4I CCNGG 2 cut(s) 69, 862
StyI CCWWGG 1 cut(s) 491
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 2 cut(s) 114, 359
TaqI TCGA 6 cut(s) 32, 326, 690, 752, 893, 948
TasI AATT 2 cut(s) 795, 833
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 7 cut(s) 82, 217, 278, 323, 647, 687, 817
Tru1I TTAA 2 cut(s) 561, 798
Tru9I TTAA 2 cut(s) 561, 798
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 2 cut(s) 107, 845
TseI GCWGC 3 cut(s) 263, 266, 531
Tsp45I GTSAC 2 cut(s) 107, 845
TspDTI ATGAA 6 cut(s) 270, 345, 366, 393, 582, 969
TspGWI ACGGA 1 cut(s) 474
TspRI CASTG 1 cut(s) 619
VneI GTGCAC 1 cut(s) 508
VpaK11BI GGWCC 2 cut(s) 408, 585
VspI ATTAAT 1 cut(s) 798
XagI CCTNNNNNAGG 1 cut(s) 867
XceI RCATGY 2 cut(s) 551, 612
XcmI CCANNNNNNNNNTGG 1 cut(s) 418
XmnI GAANNNNTTC 2 cut(s) 394, 500
XspI CTAG 3 cut(s) 237, 869, 927
ZraI GACGTC 1 cut(s) 112
ZrmI AGTACT 1 cut(s) 241
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.