Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001288

Physical Location & Seq

Genomic Coordinates Reverse (-)

18358920 .. 18360504

Gene Structure 1585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g15480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGGAAGGAGTCTGATCAAGAGTTTTGACGGTGGTAGTGGTGGTGGCGCCGGTGCAGATTCATCATCTTGGGATGCTAATCATGATCATGCGGCGCCTGCTATTACGTCTGAAGGTTATACTGAGGAGCAGATCAGTTGTAAGAGCACTTCAAGCTTCAAGGATCGTAGAGGTTCTTACAAGAGAAGAAAGACTTTACAAAACTCTTGGACTAGAGACACTCCTGCTTTGACTTACGATGGTCATGCATGGAGAAAGTACGGACAGAAATTTATTCGCAATGCCAAGCATTCAAGAAACTACTTCAGATGCACTCACAAATTGGAGTGCAAAGCAACCAAACACGTGCAACAAATTCAAGATCATCCACCACTGTTTCGGACCACATATTTTGGGAATCACACCTGCAAAGACTACCTTAACGCTTCGGAATTGGTCTTGAATTCCGCAAGTCCTAGAGATTCTTCAGAGTTCATTTGTTTTTACAACGCCAACTGTTTGACAAACAAACAAGAGCACCCTTTTTTCTCATCCTTCACTTCATCATTGTTTAAAAAAGAAGCGTTCGTTAAAGAAGATATGCCAACAACTGATCATATGGTGAAAAGTGACCACAACCATTCATCACCGTGTGATCATCTTGTGTCGAATGATCTGACAGCGTTTGAGTCTTCTGGTCTCATGAGCGAGTTCTCATCAAGCATCGATCAGTATGATTACAACGAGGAGTTTTCAAGGATTATCGAGTCTTACTTCGAGAATGAAGTTTCACAATACGGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009862 GO:0009863 GO:0009864 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031349 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0045892 GO:0045934 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048831 GO:0050776 GO:0050778 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1900055 GO:1900056 GO:1901698 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

262

Amino Acids

29.78

Weight (kDa)

6.49

Isoelectric Point (pI)

59.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	80 - 137	2.9e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22570
fragaria_vesca	FvH4_6g09650 FvH4_6g09710 FvH4_6g09710 FvH4_6g09730 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09740 FvH4_6g09750 FvH4_6g09760
malus_domestica	MD04G1175500.v1.1 MD04G1175600.v1.1 MD12G1189200.v1.1 MD12G1189400.v1.1 MD12G1189600.v1.1 MD12G1189700.v1.1 MD12G1189900.v1.1
prunus_persica	Prupe.6G294900_v2.0.a1 Prupe.6G295000_v2.0.a1 Prupe.6G295100_v2.0.a1
pyrus_communis	pycom04g15480 pycom04g15490 pycom12g17650 pycom12g17690 pycom12g17700 pycom12g17730
rosa_chinensis	RchiOBHm_Chr3g0460351 RchiOBHm_Chr3g0460361
rosa_laevigata	RLG00000025018 RLG00000025019 RLG00000025027 RLG00000025113
rosa_multiflora	Rmu_sc0000449.1_g000005 Rmu_sc0004267.1_g000019
rosa_roxburghii	Rroxscaffold_6G00419560 Rroxscaffold_6G00419590
rosa_rugosa	Rorug03G0033500 Rorug03G0033500 Rorug03G0041400 Rorug03G0041800 Rorug03G0042000
rosa_samantha	Rh3AG100000 Rh3AG100100 Rh3BG094800 Rh3BG103900 Rh3BG104000 Rh3CG105700 Rh3CG105800 Rh3DG105300 Rh3DG105400
rosa_wichuraiana	Rw3G008480 Rw3G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	413
Acc36I	ACCTGC	1 cut(s)	413
AccB1I	GGYRCC	2 cut(s)	47, 94
AciI	CCGC	2 cut(s)	92, 447
AclWI	GGATC	1 cut(s)	171
AcsI	RAATTY	3 cut(s)	269, 354, 442
AcuI	CTGAAG	3 cut(s)	132, 289, 450
AcvI	CACGTG	1 cut(s)	346
AcyI	GRCGYC	2 cut(s)	48, 95
AdeI	CACNNNGTG	1 cut(s)	632
AfaI	GTAC	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	6 cut(s)	153, 160, 294, 359, 442, 735
AluBI	AGCT	1 cut(s)	156
AluI	AGCT	1 cut(s)	156
Alw21I	GWGCWC	2 cut(s)	149, 519
Alw26I	GTCTC	2 cut(s)	210, 683
AlwI	GGATC	1 cut(s)	171
ApoI	RAATTY	3 cut(s)	269, 354, 442
AspLEI	GCGC	2 cut(s)	50, 97
AspS9I	GGNCC	1 cut(s)	381
AsuHPI	GGTGA	2 cut(s)	613, 618
AvaII	GGWCC	1 cut(s)	381
BanI	GGYRCC	2 cut(s)	47, 94
BarI	GAAGNNNNNNTAC	2 cut(s)	133, 165
BbrPI	CACGTG	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	663
Bbv12I	GWGCWC	2 cut(s)	149, 519
BccI	CCATC	1 cut(s)	233
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BclI	TGATCA	4 cut(s)	15, 85, 592, 634
BcoDI	GTCTC	2 cut(s)	210, 683
BfaI	CTAG	2 cut(s)	213, 456
BfoI	RGCGCY	2 cut(s)	51, 98
BfuAI	ACCTGC	1 cut(s)	413
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	2 cut(s)	49, 96
BmsI	GCATC	3 cut(s)	64, 299, 711
BpiI	GAAGAC	1 cut(s)	663
Bsa29I	ATCGAT	1 cut(s)	705
BsaAI	YACGTR	1 cut(s)	346
BsaBI	GATNNNNATC	1 cut(s)	78
BsaHI	GRCGYC	2 cut(s)	48, 95
BsaI	GGTCTC	1 cut(s)	683
Bse118I	RCCGGY	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	78
BseCI	ATCGAT	1 cut(s)	705
BseGI	GGATG	3 cut(s)	79, 364, 530
BseJI	GATNNNNATC	1 cut(s)	78
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	114
BseRI	GAGGAG	2 cut(s)	140, 740
BsgI	GTGCAG	1 cut(s)	75
BshNI	GGYRCC	2 cut(s)	47, 94
BshVI	ATCGAT	1 cut(s)	705
BsiHKAI	GWGCWC	2 cut(s)	149, 519
BsiSI	CCGG	1 cut(s)	51
BsmAI	GTCTC	2 cut(s)	210, 683
BsmI	GAATGC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	683
Bsp1286I	GDGCHC	2 cut(s)	149, 519
Bsp143I	GATC	9 cut(s)	15, 85, 132, 163, 361, 592, 634, 652, 706
BspACI	CCGC	2 cut(s)	92, 447
BspCNI	CTCAG	1 cut(s)	115
BspDI	ATCGAT	1 cut(s)	705
BspHI	TCATGA	2 cut(s)	82, 681
BspLI	GGNNCC	2 cut(s)	49, 96
BspMI	ACCTGC	1 cut(s)	413
BspPI	GGATC	1 cut(s)	171
BspT107I	GGYRCC	2 cut(s)	47, 94
BspTNI	GGTCTC	1 cut(s)	683
BsrDI	GCAATG	1 cut(s)	286
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssMI	GATC	9 cut(s)	15, 85, 132, 163, 361, 592, 634, 652, 706
BssNI	GRCGYC	2 cut(s)	48, 95
Bst4CI	ACNGT	4 cut(s)	32, 375, 497, 630
BstACI	GRCGYC	2 cut(s)	48, 95
BstBAI	YACGTR	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	3 cut(s)	79, 364, 530
BstH2I	RGCGCY	2 cut(s)	51, 98
BstHHI	GCGC	2 cut(s)	50, 97
BstKTI	GATC	9 cut(s)	18, 88, 135, 166, 364, 595, 637, 655, 709
BstMAI	GTCTC	2 cut(s)	210, 683
BstMBI	GATC	9 cut(s)	15, 85, 132, 163, 361, 592, 634, 652, 706
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 153
BstV2I	GAAGAC	1 cut(s)	663
Bsu15I	ATCGAT	1 cut(s)	705
BsuTUI	ATCGAT	1 cut(s)	705
BtsCI	GGATG	3 cut(s)	79, 364, 530
BtsIMutI	CAGTG	1 cut(s)	371
BveI	ACCTGC	1 cut(s)	413
Cac8I	GCNNGC	1 cut(s)	99
CciI	TCATGA	2 cut(s)	82, 681
CfoI	GCGC	2 cut(s)	50, 97
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	381
ClaI	ATCGAT	1 cut(s)	705
Csp6I	GTAC	1 cut(s)	259
CspCI	CAANNNNNGTGG	2 cut(s)	373, 408
CviAII	CATG	5 cut(s)	83, 89, 245, 249, 682
CviJI	RGCY	1 cut(s)	156
CviKI_1	RGCY	1 cut(s)	156
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	1 cut(s)	123
DinI	GGCGCC	2 cut(s)	49, 96
DpnI	GATC	9 cut(s)	17, 87, 134, 165, 363, 594, 636, 654, 708
DpnII	GATC	9 cut(s)	15, 85, 132, 163, 361, 592, 634, 652, 706
DraI	TTTAAA	1 cut(s)	553
DraIII	CACNNNGTG	1 cut(s)	632
Eco31I	GGTCTC	1 cut(s)	683
Eco47I	GGWCC	1 cut(s)	381
Eco57I	CTGAAG	3 cut(s)	132, 289, 450
Eco72I	CACGTG	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	442
EcoT22I	ATGCAT	1 cut(s)	250
EgeI	GGCGCC	2 cut(s)	49, 96
EheI	GGCGCC	2 cut(s)	49, 96
FaeI	CATG	5 cut(s)	86, 92, 248, 252, 685
FalI	AAGNNNNNCTT	4 cut(s)	178, 210, 402, 434
FatI	CATG	5 cut(s)	82, 88, 244, 248, 681
FauNDI	CATATG	1 cut(s)	597
FbaI	TGATCA	4 cut(s)	15, 85, 592, 634
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	3 cut(s)	86, 351, 517
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	2 cut(s)	213, 456
GlaI	GCGC	2 cut(s)	49, 96
GluI	GCNGC	1 cut(s)	93
HaeII	RGCGCY	2 cut(s)	51, 98
HapII	CCGG	1 cut(s)	51
HhaI	GCGC	2 cut(s)	50, 97
Hin1I	GRCGYC	2 cut(s)	48, 95
Hin1II	CATG	5 cut(s)	86, 92, 248, 252, 685
Hin6I	GCGC	2 cut(s)	48, 95
HinP1I	GCGC	2 cut(s)	48, 95
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	6 cut(s)	10, 59, 397, 461, 668, 746
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	2 cut(s)	613, 618
Hpy188I	TCNGA	7 cut(s)	15, 112, 308, 381, 430, 469, 657
Hpy188III	TCNNGA	7 cut(s)	19, 83, 294, 359, 439, 682, 757
HpyAV	CCTTC	2 cut(s)	107, 544
HpyCH4III	ACNGT	4 cut(s)	32, 375, 497, 630
HpyCH4IV	ACGT	2 cut(s)	107, 345
HpyCH4V	TGCA	6 cut(s)	56, 248, 312, 330, 349, 408
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 153
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	2 cut(s)	107, 345
Hsp92I	GRCGYC	2 cut(s)	48, 95
Hsp92II	CATG	5 cut(s)	86, 92, 248, 252, 685
HspAI	GCGC	2 cut(s)	48, 95
KasI	GGCGCC	2 cut(s)	47, 94
Ksp22I	TGATCA	4 cut(s)	15, 85, 592, 634
Kzo9I	GATC	9 cut(s)	15, 85, 132, 163, 361, 592, 634, 652, 706
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	5 cut(s)	64, 111, 237, 418, 660
LweI	GCATC	3 cut(s)	64, 299, 711
MaeI	CTAG	2 cut(s)	213, 456
MaeII	ACGT	2 cut(s)	107, 345
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	9 cut(s)	17, 87, 134, 165, 363, 594, 636, 654, 708
MboI	GATC	9 cut(s)	15, 85, 132, 163, 361, 592, 634, 652, 706
MboII	GAAGA	4 cut(s)	198, 456, 587, 663
MhlI	GDGCHC	2 cut(s)	149, 519
MluCI	AATT	5 cut(s)	269, 320, 354, 431, 442
Mly113I	GGCGCC	2 cut(s)	48, 95
MlyI	GAGTC	3 cut(s)	19, 677, 755
MnlI	CCTC	3 cut(s)	118, 164, 718
Mph1103I	ATGCAT	1 cut(s)	250
MseI	TTAA	4 cut(s)	420, 552, 570, 784
MslI	CAYNNNNRTG	2 cut(s)	87, 628
MspI	CCGG	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	289
MwoI	GCNNNNNNNGC	2 cut(s)	98, 153
NarI	GGCGCC	2 cut(s)	48, 95
NdeI	CATATG	1 cut(s)	597
NdeII	GATC	9 cut(s)	15, 85, 132, 163, 361, 592, 634, 652, 706
NlaIII	CATG	5 cut(s)	86, 92, 248, 252, 685
NlaIV	GGNNCC	2 cut(s)	49, 96
NmuCI	GTSAC	1 cut(s)	608
NsiI	ATGCAT	1 cut(s)	250
PagI	TCATGA	2 cut(s)	82, 681
PaqCI	CACCTGC	1 cut(s)	413
PctI	GAATGC	1 cut(s)	289
PfeI	GAWTC	3 cut(s)	59, 397, 461
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	3 cut(s)	18, 676, 754
PluTI	GGCGCC	2 cut(s)	51, 98
PmaCI	CACGTG	1 cut(s)	346
PmlI	CACGTG	1 cut(s)	346
PpsI	GAGTC	3 cut(s)	18, 676, 754
Ppu21I	YACGTR	1 cut(s)	346
PspCI	CACGTG	1 cut(s)	346
PspN4I	GGNNCC	2 cut(s)	49, 96
PspPI	GGNCC	1 cut(s)	381
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	2 cut(s)	87, 628
SaqAI	TTAA	4 cut(s)	420, 552, 570, 784
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	9 cut(s)	15, 85, 132, 163, 361, 592, 634, 652, 706
Sau96I	GGNCC	1 cut(s)	381
SchI	GAGTC	3 cut(s)	19, 677, 755
SduI	GDGCHC	2 cut(s)	149, 519
SetI	ASST	7 cut(s)	110, 118, 158, 175, 348, 407, 420
SfaNI	GCATC	3 cut(s)	64, 299, 711
SfoI	GGCGCC	2 cut(s)	49, 96
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	381
SmiMI	CAYNNNNRTG	2 cut(s)	87, 628
Sse9I	AATT	5 cut(s)	269, 320, 354, 431, 442
SsiI	CCGC	2 cut(s)	92, 447
SspDI	GGCGCC	2 cut(s)	47, 94
SspMI	CTAG	2 cut(s)	213, 456
TaaI	ACNGT	4 cut(s)	32, 375, 497, 630
TaiI	ACGT	2 cut(s)	110, 348
TaqI	TCGA	4 cut(s)	647, 705, 744, 756
TasI	AATT	5 cut(s)	269, 320, 354, 431, 442
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	3 cut(s)	59, 397, 461
Tru1I	TTAA	4 cut(s)	420, 552, 570, 784
Tru9I	TTAA	4 cut(s)	420, 552, 570, 784
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	608
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	5 cut(s)	51, 463, 531, 612, 777
TspGWI	ACGGA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	3 cut(s)	269, 354, 442
XspI	CTAG	2 cut(s)	213, 456
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.